LOC120553385


Basic Information

Item Value
gene id LOC120553385
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24620865 ~ 24635265 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791728.1
CTGGTTTATCTTTGTACAGGTCTGCCCTGATCAGCTGTATAAACAACGTGATAGAACATTATTCGTGGGACTGTCCTAACATCGGTTAGACGCAGATACAATGTCTGACAGCTCTGAAACGCCCCAGAAGACATTGAAGATGGACCATAAGGTGTTTAATGATCCCATCCACGGGACGGtggagttacacccacttctcATCAAAATCATCGACACACCTCAGTTCCAGAGACTGAGAAACATCAAGCAGCTTGGAGGGGCCTACTTTGTTTACCCTGGAGCATCCCACAACCGCTTTGAGCACTCCATTGGGGTGGGGCACTTGGCAGGTCAACTTGTTGAAGCTCTGCGTACAAGGCAGCCGAAACTCTACATCGATGACAGAGACGTCCTTTGTGTGAAGATTGCTGGTCTCTGCCATGACCTGGGACATggacccttttctcatctgtatGATCAAATGTTCATAACCAAAGTACAACCAAAAACTGAGTGGAAGCATGAAGACAACTCTGTAAAGATGTTTGACCACCTGGTGGAATCTAATGATCTGGAGCTGGAGATGAAGAATAAGTATGGTCTGACTGATGATGACTTGAATTTCATCAAAAAGTTGATTGAAGGACTGAAGGACCCTACAAAAGTCCAGTGGTCAGAGATTGGTCGGACAGAGGACAAATTCTTCCTGTTTGAAATCGTGGCCAACAAAACAAACGGCATTGATGTGGACAAGTTTGACTACTTTGCCAGGGACTGCTACCACCTGGGCATGAAGAACAACTTTGACCATCTCCGCTTCATACAGTTTGCCAGAGTGATTAAGGTGGAAAAAGACGGGCTGAATCACATCTGCAGTAGAGACAAGGAGGTGGGCAATCTGTATGACATGTTCTACACCAGGAACTGTCTCCACAGAAGAGCCTACCAGCACAGAGTGAACAAGATCATAGAGTATATGATCGCAGAGGCCTTTTTAAAAGCAAACAAGCATATCAAGATTGAAGGCTCAGGAGGGAAAGAGTTCACTCTCTCTACAGCCAGAGGTGACATGGAGGCCTACACCAAGCTGACAGATCATGTGTTTGAACAAATACTCGAGCTGGATGAGGCAAAAGTCCCTAACTCTTCCTCTGTGGAGCAGGCTGAGGCAAAGAAGCTGGCTGAGGCAAAGGAGATTCTAGAAAGGATCATCTCTCGAGACCACTACAGGTTTCTGGGTGAAATCAAGGCTATACAAGTCCCGACCTTGGAGAAGATTTGCGATTGGAAAAAGGAATTGGATCAAGCGAGACAGAATGTTTGTCCTGTAGATCATGAACTTGAACCAATACTCAACCCCTTCACTGAGAAGACGGCTAAGGCATGTCGAACTCTATCTGATGCCATCTCTCAAACCCTCCTCCAAGAATTTCCAAAAGAAACCCAGCCAGGGAAACCCACAGAGGAGACGTATCGTCGTTGGGAAAGGGAATTGGCTGCAGCCGTCCCTAAGGGAGGTGATGGGGGTGTCACGCTGACAGCAGAGGACTTTGTAGTTTTAGTCACTACTTTTGACTATGGAATGAAAGACAAGGACCCCATCAAGAATGTGTATTTCTACAACAAGATAAACTGTGACATAGCATTCACCATCCCCAAAGACCAGGTGTCCAAGCTTCTCCCAGAATGCTTTTCTGAGCAGCTGATCAGGGTTTAcagtaagaagaagaagactgatgACCAAAGTCTGAAGGCTGCCAAGAATCACTTGCTCAAGTGGTGTGAACAGAAGGGCTTGCCAAAACCTCAGTAGGGAGACACTGCAACACTGGAAGTCACCCCTGGGGGAAATATCCAGAACAACCCACCAGATGTTTTGGGAAATAGAgattaaaagtgaaaaaagaagaTTGATTCTATAAGGTGGATTCTGAATGTGACAGgttgtcgttgcaaatgagaaattgttctcaatcgacttacctgaataaataaaggtaaaaaaataaaaataaaaaatgagcaCAGTGTAGTACTGGACTAGACCATTTCTCTCCAAAAACAAATGATTTCAGAGTACCAGGATACATTACTGCATGTTTGGGTCATATACTCAGTTTCTTTAGAGCCCTGTTCAACATTGAACACATATCTTTGTTTTAGTTTGATCATTAAACACACTTTAAATGTCTTGGTCTAAACTGAAGCATATTTTAGATAATTGTTTTTTATCAGTCACATTTAGGCTTCTCTGTGTATTCTGTGTGTATTCCTTACAATCAGGGCACGCTATAAAGCACTACCCACATGGAGTGGAGTTAAAGTGAATATTTAAATTGTGGATTAGGGATTTTGAATATTATGAAGGTTTTTGGTTTTTATGTTAATCTGTGTGAATTGATGTGATAATctgattatatattatatatggttAGCTCTGATTTGGGAATCACTTTGTATTGCATCTATCAAATGAAATAAGAATTATGATTACTATAACCATTATGATAACAGTATACTCTAGCCCAGTGGTGTCAAAATAATTTTAGTTCATGGGCCACATCCCCCTAATTTGATGTCAAGTGGGCCGGACCAGTGAACCActccagaaagatcagaaactgTATCTGCCACAGAGTTACTTGTCAGCTTGATGTCGGCAAATGCAAGTCTCTTCTGCTACGACGGTGTTCTAAGGCCGttgtaggaaaaaaataatgttacagACCCGGGAGAGTCTGTACTGTCCTGGCCCACGGGCCGTATGTTTGGCACCCCTGCTCTAGCCTATATCACTGTTTCTCACTGTACTCATACTATATAGCTCAACTTGCTTTGTTCAATGTAACCATCACAGTGTGATTAAGATAAGCTTTCAATATTGTTGTGTTTTGCTCATAGAGTGAAACTGTATTagattattaatatatatttgggGCTGTAAAGGGAaatctatctaatctaatctattaGAACCTTTCAACTGTATCCCTAATGAGAAAGGTTGATGACAGATTGTACCTGCTCTATTTGAAATAAAACTCTTGTTTGTC

Function

GO: NA

KEGG:

id description
K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791728.1 True 3032 mRNA 0.42 16 24620865 24635265

Neighbor

gene id symbol gene type direction distance location
LOC120553040 NA coding upstream 15918 24597350 ~ 24604947 (+)
nopchap1 LOC104942935 coding upstream 49544 24566241 ~ 24571321 (+)
chst11 chst11 coding upstream 142102 24384898 ~ 24478763 (+)
LOC120553464 LOC107381693,LOC105020203 coding upstream 255516 24320276 ~ 24365349 (+)
ift46 LOC107372934 coding upstream 312421 24301765 ~ 24308444 (+)
LOC120553387 NA coding downstream 96931 24732196 ~ 24749828 (+)
LOC120553386 NA coding downstream 138236 24773501 ~ 24788753 (+)
LOC120553142 NA coding downstream 194933 24830198 ~ 24835745 (+)
scube1 scube1 coding downstream 234682 24869947 ~ 24992165 (+)
mpped1 mpped1,LOC103131679,LOC106525904 coding downstream 375969 25011234 ~ 25113193 (+)
G230109 NA non-coding upstream 135348 24482310 ~ 24485517 (+)
G230011 NA non-coding upstream 356800 24260059 ~ 24264065 (+)
G229994 NA non-coding upstream 504744 24112965 ~ 24116121 (+)
LOC120553514 NA non-coding upstream 525700 24088025 ~ 24095165 (+)
G229976 net1 non-coding upstream 553876 24065214 ~ 24066989 (+)
G230192 NA non-coding downstream 160688 24795953 ~ 24798741 (+)
G230249 NA non-coding downstream 549547 25184812 ~ 25191943 (+)
G230260 NA non-coding downstream 716612 25351877 ~ 25352174 (+)
G230259 NA non-coding downstream 741082 25376347 ~ 25377601 (+)
G230327 NA non-coding downstream 800886 25436151 ~ 25494355 (+)
LOC120553083 NA other upstream 306158 24309542 ~ 24314707 (+)
LOC120553686 LOC105929833,LOC107382334 other upstream 675225 23934300 ~ 23945640 (+)
adm2a NA other upstream 772241 23833018 ~ 23848624 (+)
kcnc2 kcnc2,LOC100689973,LOC101475944 other upstream 1180202 23315421 ~ 23440663 (+)
phlda1 phlda1 other upstream 1877686 22739717 ~ 22743179 (+)
LOC120553523 NA other downstream 727617 25362882 ~ 25373996 (+)
msrb3 msrb3 other downstream 1006575 25641840 ~ 25662819 (+)
LOC120553706 NA other downstream 1175142 25810407 ~ 25812828 (+)
arhgef39 arhgef39 other downstream 1402923 26038188 ~ 26106823 (+)
mrps33 mrps33,LOC106591474 other downstream 1737449 26372714 ~ 26381109 (+)

Expression


Co-expression Network