LOC120553387


Basic Information

Item Value
gene id LOC120553387
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24732196 ~ 24749828 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791731.1
GCTGGTTTATCTTTGTACAGGTCTGCCCTGATCAGCTGTATAAACAACGTGATAGAACATTATTCGTGGGACTGTCCTAACATCGGGTAGACGCAGATCAAATGTCTCACAGCTCTGAAATGCCCCAGAAGACATTGAAGATGGACCATAAGGTGTTTAATGATCCCATCCATGGGACGGtggagttacacccacttctcATCAAAATCATCGACACACCTCAGTTCCAGAGACTGAGAAACATCAAGCAGCTTGGAGGGGGCTACTTTGTTTACCCTGGAGCATCCCACAACCGCTTTGAACACTCCATTGGGGTGGGGCACTTGGCAGGTCAACTTGTTGAAGCTCTGCGTACAAGGCAGCCGGAACTCGACATCGATGAGAGAGACATCCTTTGTGTGAAGATTGCTGGTCTCTGCCATGACCTGGGACATggacccttttcccatctgttTGATAAAATGTTCATACCCAAAGTACCACATCCACCAGGTCCACTAGGTGATAAAATGGCAAAGTGGAAGCATGAAGAAGCCTCTGTAGAGATGCTTGACCATCCGGATAAATTTAATAATCTGGAGCTGGAGATGAAGAATAAGGAGAATGGTCTGACTGATGATGACTTGAATTTCATCAAAAAGTTGATTGAAGGACTGAAGGACCCTAATGCAGTCCAGTGGCCATATAATGGTCGACCAAAGGAAAAATCCTTCCTCTATGAAATCGTGGCCAACAAAACAAATGGCATTGATGTGGACAAGTTTGACTACTTTGCCAGGGACTTCTACCACCTGGGCATGAAGAGCACCTTTGACCATCTCCGCTTCATACAGTTTGCCAGAGTgattaaagtgaaaaaagacGGGCTGAATCACATCTGCAGTAGAGACAAGGAGGTGGGCAATCTGTATGACATGTTCTACACCAGGAACTGTATCTACAGAAGAGCCTGTCAGCACAAAGTGAACAAGATCATAGAGTATATGATCGCAGAGGCCTTTGTAAAAGCAGACGGGCATATCAAGATTGAAGGCTCAGGAGGGAAAGAGTTCACTCTCTCTACAGCCATAGGTGACATGGAGGCCTACACCAAGCTGACAGATCATGTGTTTGAACAAATACTCCACTCTTCCTCTGCGGAGCTGGCTGAGGCAAAGAAGATTCTAAAAAGGATCATCTCTCGAGACCACTACAGGTTTCTGGGTGAAACCAAGCCTAGACAAGTCCCGACCAGGGATGTGTATCGTCTTTGGAAAGAGGAATTGGCTGAAGCCGTCTCTGAGGAAGGCGATGGGGATGTCAAGCTGAAACCAGAGGACTTTGTAGTTTTAGTCGCTACTTTTGACTATGGAATGAAAGACAAAGACCCCATCAAGAATGTGTATTTCTACAACAAGAGATACCCTGACACAGCACTCAACATCCCCAAAGACCAGGTGTCCAAGCTTCTCCCAGAATGCTTTTCTGAGCAGCTGATCAGGGTTTACAGTAAGAAGACTGATGGGCAGAGTGTGGATGCTGCCAGGAGGCACTTGCACCAGTGGTGTAAAAATAAGTGA

Function

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791731.1 True 1559 mRNA 0.46 14 24732196 24749828

Neighbor

gene id symbol gene type direction distance location
LOC120553385 NA coding upstream 96931 24620865 ~ 24635265 (+)
LOC120553040 NA coding upstream 127249 24597350 ~ 24604947 (+)
nopchap1 LOC104942935 coding upstream 160875 24566241 ~ 24571321 (+)
chst11 chst11 coding upstream 253433 24384898 ~ 24478763 (+)
LOC120553464 LOC107381693,LOC105020203 coding upstream 366847 24320276 ~ 24365349 (+)
LOC120553386 NA coding downstream 23673 24773501 ~ 24788753 (+)
LOC120553142 NA coding downstream 80370 24830198 ~ 24835745 (+)
scube1 scube1 coding downstream 120119 24869947 ~ 24992165 (+)
mpped1 mpped1,LOC103131679,LOC106525904 coding downstream 261406 25011234 ~ 25113193 (+)
pnpla3 LOC103361965,LOC104964946 coding downstream 468712 25218540 ~ 25241938 (+)
G230109 NA non-coding upstream 246679 24482310 ~ 24485517 (+)
G230011 NA non-coding upstream 468131 24260059 ~ 24264065 (+)
G229994 NA non-coding upstream 616075 24112965 ~ 24116121 (+)
LOC120553514 NA non-coding upstream 637031 24088025 ~ 24095165 (+)
G229976 net1 non-coding upstream 665207 24065214 ~ 24066989 (+)
G230192 NA non-coding downstream 46125 24795953 ~ 24798741 (+)
G230249 NA non-coding downstream 434984 25184812 ~ 25191943 (+)
G230260 NA non-coding downstream 602049 25351877 ~ 25352174 (+)
G230259 NA non-coding downstream 626519 25376347 ~ 25377601 (+)
G230327 NA non-coding downstream 686323 25436151 ~ 25494355 (+)
LOC120553083 NA other upstream 417489 24309542 ~ 24314707 (+)
LOC120553686 LOC105929833,LOC107382334 other upstream 786556 23934300 ~ 23945640 (+)
adm2a NA other upstream 883572 23833018 ~ 23848624 (+)
kcnc2 kcnc2,LOC100689973,LOC101475944 other upstream 1291533 23315421 ~ 23440663 (+)
phlda1 phlda1 other upstream 1989017 22739717 ~ 22743179 (+)
LOC120553523 NA other downstream 613054 25362882 ~ 25373996 (+)
msrb3 msrb3 other downstream 892012 25641840 ~ 25662819 (+)
LOC120553706 NA other downstream 1060579 25810407 ~ 25812828 (+)
arhgef39 arhgef39 other downstream 1288360 26038188 ~ 26106823 (+)
mrps33 mrps33,LOC106591474 other downstream 1622886 26372714 ~ 26381109 (+)

Expression


Co-expression Network