gdi2 (gdi2,LOC104923747)


Basic Information

Item Value
gene id gdi2
gene name gdi2,LOC104923747
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 23899241 ~ 23913813 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791739.1
GCCCCCTCAGGCGCCTGACGCTGAACCGCTGCCCCTTCTCATTTCCAGCCCCGCAGATCTCCATTTTCTTCTTTCCAGATATTCGGGAGCAGAGGAGAAAAGACTTgaaaaaatgaatgaagaaTACGACGTTATCGTTCTGGGCACCGGGCTTACGGAATGCATTTTATCAGGCATCATGTCGGTGAAGGGGAAGAAGGTTCTGCACATGGACCGCAACTCCTACTACGGAGCCGAGAGTGCCTCCATCACGCCTCTTGAAGATCTCTACAAGCGCTTCAGCATTCCGGGCAAACCTCTTGAGTCGATGGGAAAAGGCCGGGATTGGAACGTGGATCTCATCCCTAAATTCCTTATGGCCAACGGTCAGCTGGTGCGCATGCTGCTGATCACAAAGGTGACTCAGTACCTGGATTTCAAAGTGGTAGAGGGCAGCTTTGTGTACAAGGGGAGCAAAATCCATAAAGTCCCCTCCACTGAGGCCGAGGCTCTGTCATCTGGTCTCATGGGGTTGTTTGAGAAACGGCGCTTCAAAAACTTCCTTCAGTTCATTTCCAACTTTGACGAGAGCAACCCCAAAACCATGGAAGGCATCGACCCCCAGCAGTCGACTATGAgggacattttcaaaaagtatAACCTGGGCCAGGACGTCATCGACTTCACCGGCCACTCCCTCGCCCTCTACCGCACAGACGAATACCTGGATCAACCTTGCATCGAAACTATAAACAGGATCAAGCTTTACAGTGAGTCTCTGGCCAGATACGGCAAGAGCCCATACCTCTACCCACTGTACGGCCTGGGAGAACTGCCACAAGGGTTTGCCAGGCTGAGTGCTATCTACGGGGGGACGTATATGTTGAACAAGCCCATAGACGAGATCGTGGTAGAGAATGGGAAGGTGGTGGGAGTCAAGTCTGAGGGAGAGATCGCCAGGTGCAAGCAGCTGATCTGCGACCCCAGCTACGCCATGGACCGCGTCACCAAAGTGGGTCAGGTGATCAGAGTCATCTGCATCTTGAGTCACCCGATAGGCAACACTGGCGACGTCAACTCGTGCCAGATCATCATCCCCCAGAATCAGGTCAACAGGAAACATGACATCTACGTTTGTATGATCTCCTTTGCTCACAACGTGGCGGCACAAGGTAAATATGTTGCCATCGTCAGCACCACAGTGGAGACAAACGACCCCGAGAAAGAGATCAAGCCGGCCCTGGACCTACTGACGCCCATTGAGCAGAAGTTTGTCAGTATTAGTGACCAGTATGCACCCACTGACATGGGCACTGACAGCCAGATTTTCATCTCCCGTACGTATGATGCCACCACTCACTTCGAGACCACCTGTGACGACATCAAAGACATCTACAAGAGGATGACGGGCTCGGAATTTGACTTTGCCGAGATGGAGCGCAAGAAGCAGGACACCTTCGGTGATGCCGCAGACTAGAGGCGAAAGCATCCGCAACACTCCTGATATCAAAGAACAACGCTGCCGACAACTGAAATCTTACAAAAAATAGAAAACCTACACAAAACATGTACACACCTATGGGCTGGCTGATCATCCAAGTCTATGGTTTGCCCCTTTTTAGGAAGtccatgatatatatatatagggagaTATGATAGAGTATTGTTGGACAGGGTTT

Function

symbol description
gdi2 Predicted to enable Rab GDP-dissociation inhibitor activity. Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within protein transport and small GTPase mediated signal transduction. Predicted to be active in cytoplasm. Orthologous to human GDI2 (GDP dissociation inhibitor 2).

NR:

description
PREDICTED: rab GDP dissociation inhibitor beta

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0005093 Rab GDP-dissociation inhibitor activity molecular_function

KEGG:

id description
K17255 GDI1_2; Rab GDP dissociation inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791739.1 True 1658 mRNA 0.51 10 23899241 23913813

Neighbor

gene id symbol gene type direction distance location
ankrd16 ankrd16,LOC102787719 coding upstream 1343 23886747 ~ 23897898 (+)
trnay-gua_62 NA coding upstream 11817 23887337 ~ 23887424 (+)
ppp6r2a LOC104923754 coding upstream 192273 23686003 ~ 23706968 (+)
LOC120553166 LOC105929793,LOC103363829,LOC108250965 coding upstream 222763 23654475 ~ 23676478 (+)
LOC120553165 LOC104923755 coding upstream 248061 23630935 ~ 23651180 (+)
asb13a.1 LOC103363234,LOC100709988,LOC105929846,LOC101482319,LOC102215476,LOC108241840 coding downstream 10343 23924156 ~ 23933876 (+)
mkln1 mkln1 coding downstream 295806 24209619 ~ 24249507 (+)
ift46 LOC107372934 coding downstream 387952 24301765 ~ 24308444 (+)
LOC120553464 LOC107381693,LOC105020203 coding downstream 406463 24320276 ~ 24365349 (+)
chst11 chst11 coding downstream 471085 24384898 ~ 24478763 (+)
G229841 cbll1 non-coding upstream 219933 23667703 ~ 23679308 (+)
G229821 dnajc2 non-coding upstream 313742 23579721 ~ 23585499 (+)
LOC120552982 NA non-coding upstream 641380 23232498 ~ 23257861 (+)
G229676 NA non-coding upstream 691041 23207076 ~ 23208200 (+)
G229672 NA non-coding upstream 720289 23177956 ~ 23178952 (+)
G229938 NA non-coding downstream 1998 23915811 ~ 23916388 (+)
G229945 NA non-coding downstream 33880 23947693 ~ 23948538 (+)
LOC120553072 NA non-coding downstream 56134 23969947 ~ 23971613 (+)
G229974 NA non-coding downstream 80753 23994566 ~ 23994835 (+)
G229976 net1 non-coding downstream 151401 24065214 ~ 24066989 (+)
adm2a NA other upstream 50617 23833018 ~ 23848624 (+)
kcnc2 kcnc2,LOC100689973,LOC101475944 other upstream 458578 23315421 ~ 23440663 (+)
phlda1 phlda1 other upstream 1156062 22739717 ~ 22743179 (+)
G229428 NA other upstream 2030944 21867201 ~ 21868297 (+)
G229422 NA other upstream 2040032 21857983 ~ 21859209 (+)
LOC120553686 LOC105929833,LOC107382334 other downstream 20487 23934300 ~ 23945640 (+)
LOC120553083 NA other downstream 395729 24309542 ~ 24314707 (+)
G230148 LOC102781993,LOC101465723 other downstream 706999 24620812 ~ 24778258 (+)
LOC120553523 NA other downstream 1449069 25362882 ~ 25373996 (+)
msrb3 msrb3 other downstream 1728027 25641840 ~ 25662819 (+)

Expression


Co-expression Network