atp23 (atp23,LOC102777000,LOC106609469)


Basic Information

Item Value
gene id atp23
gene name atp23,LOC102777000,LOC106609469
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19504380 ~ 19507591 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791751.1
CCGTCCATTACCTTTGACCTTTTGCGACCACGTGATCTACAAAACAGTGatgacctagctagctagctaaccaggGGATTCATGCATACATTTCCAAATTGTTGACAACATTTCCTACAATGGACCAGTCTAAACAAGAGGAGGAATATGGATACGATTTATTCCCGGAGAGAAAGACGGGGAATAAGACGGGGAAATCCATCGCGCAGAGCCTGTTCACTTTCAACCACAAGTGTCAGGTCATGTTGCAGTTCGCAACGGAAACTAGTCCGTATGCCAAACTCCTCCTCAGTGCCATGAAAAGTTCCGGATGCAAAGTGTTGAAAGAGCGCCATTTCTCCTGTGAGGACTGTGACGGGACGGTCAGCGGTGGCTTTGACGCAGATTCTTCTCAAATCGTTTTGTGTCAGAACAACATCCACCAGCAGTCCCACATGAACCGAGTGGTCACACATGAGCTCATTCATGCCTTTGACCACTGCCGCGCCCACGTGGACTGGTTCAACAACTTCAGACATCTAGCTTGTTCTGAGATTCGGGCAGCTAACCTCAGTGGAGACTGCTCCTTTAGCAATGAAGTATCCAGATTCAACTTTGGCTTGAAGCAGCATCATCAGGAGTGCGTTCGAGGCCGTGCCCTTCGCTCCATCCTAGCTGTGAGGAAAATTAGCCGAGAGGAGGCGGTGAAAATAGTGGATGAAGTCTTTCACACGTGTTTCAACGACCACGAACCGTTTGGACGAATCCCGCACGGCAAGAAGGATGCTGGCTTTGCCTACAGAGATTATGAGAACAGAGATCGATATTATGCAAACCTTTAGTGTCGTCACATTCTCATTTAACTCCCAAGGGCGCTGTGACTGGCGGCGATGCTGATAGAAGCTTGGCAGCGCCAGGGCCCCGGGTCAACCTAAAAGCCTCAACAAAATGACAGTGTGTCGAAAACGATCAAAGCCCTTCAGAAGGGATTTTCAGAGAATGATGATTTGTCCTTGGAACAGGAGGATACAGTACATTTCATCTTCTACCTTCATTTTTATACTAATTCTGTATAAAGGGATTGAAAGGGGTCATTTTGCTGTGAGGGTAAATTATTAGACGAGGCCCCCGTGACTTatttgtcattagtttttatttgatcAATGGGTGCTTTTAAGGAAATGcaggatttcatttttgtccatCAATGTTTGCTGTTAAAGTCTGTTGATGACAAACAAAGATGTATTTCTCTGACTGTTTGCTCTTCATCGTGTTGCCACATTGACCTCCACTCATTTCTTGTAAATAGAGCTGATAGTGCTTAAATTAAACCAAATCAACTTGTGTTTTAATTAAAGTTTGATTCCTCTGAAAA

Function

symbol description
atp23 Predicted to enable metal ion binding activity and metalloendopeptidase activity. Predicted to be involved in mitochondrial protein processing and mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within proteolysis. Predicted to be extrinsic component of mitochondrial inner membrane. Orthologous to human ATP23 (ATP23 metallopeptidase and ATP synthase assembly factor homolog).

NR:

description
mitochondrial inner membrane protease ATP23 homolog isoform X3

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K18156 ATP23, XRCC6BP1; mitochondrial inner membrane protease ATP23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791751.1 True 1357 mRNA 0.45 6 19504380 19507591

Neighbor

gene id symbol gene type direction distance location
LOC120553398 NA coding upstream 9057 19487602 ~ 19495323 (+)
LOC120553799 NA coding upstream 21228 19478917 ~ 19483152 (+)
LOC120553798 LOC104924523,LOC103359230,LOC104954154,LOC103382963,LOC106531213 coding upstream 25105 19473150 ~ 19479275 (+)
mapk11 mapk11,LOC100700904,LOC103382962 coding upstream 33407 19454824 ~ 19470973 (+)
trnaq-uug_5 NA coding upstream 45226 19459083 ~ 19459154 (+)
LOC120553510 slc16a7,LOC103364250 coding downstream 86822 19594413 ~ 19627713 (+)
LOC120553417 syn3 coding downstream 416180 19923771 ~ 20047996 (+)
LOC120553415 NA coding downstream 617050 20124641 ~ 20162039 (+)
LOC120553750 NA coding downstream 666860 20174451 ~ 20184363 (+)
LOC120553751 NA coding downstream 677491 20185082 ~ 20190908 (+)
G228787 NA non-coding upstream 83551 19420372 ~ 19420829 (+)
LOC120553381 NA non-coding upstream 595499 18905236 ~ 18908881 (+)
LOC120553383 NA non-coding upstream 606853 18892174 ~ 18897527 (+)
G228622 NA non-coding upstream 764896 18738484 ~ 18739484 (+)
G228611 LOC102192848,LOC101469293 non-coding upstream 826815 18676351 ~ 18677565 (+)
LOC120553618 NA non-coding downstream 16484 19524075 ~ 19559043 (+)
LOC120553213 NA non-coding downstream 208671 19716262 ~ 19717346 (+)
G228905 NA non-coding downstream 302084 19809675 ~ 19810580 (+)
LOC120553215 NA non-coding downstream 326416 19834007 ~ 19841662 (+)
G228912 NA non-coding downstream 361802 19869393 ~ 19871723 (+)
G228784 LOC103359233,LOC104943309,LOC100709697 other upstream 90676 19410490 ~ 19413704 (+)
LOC120553164 NA other upstream 148829 19352983 ~ 19355551 (+)
LOC120553630 muc19 other upstream 649066 18822832 ~ 18855314 (+)
srr srr,LOC105936311,LOC103459528 other upstream 971266 18530136 ~ 18533114 (+)
G228335 ahcyl2,LOC103371314,LOC107725924,LOC107656398 other upstream 2581557 16919663 ~ 16922823 (+)
LOC120553210 LOC104943308 other downstream 124346 19631937 ~ 19839382 (+)
LOC120553104 LOC103364246,LOC103152567,LOC106913527,LOC103459763,LOC103459764,LOC106945279 other downstream 345337 19852928 ~ 19905952 (+)
G228924 NA other downstream 474657 19982248 ~ 19985648 (+)
LOC120553749 NA other downstream 639487 20147078 ~ 20173407 (+)
LOC120553418 NA other downstream 683337 20190928 ~ 20225185 (+)

Expression


Co-expression Network