LOC120553417 (syn3)


Basic Information

Item Value
gene id LOC120553417
gene name syn3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19923771 ~ 20047996 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791788.1
gagagagagggcttGGCTGGGAGGCTGAGGAGGACCGTGGACTTGAgcgcagaagaagaagaagcagaagcatcagaagaagaagaagaagaggaaggtcTCCATCATCCGACACTTGCTCATCACTGACCACCGCTCAGGATTTCAAGCATtcttccccctctcctcctgtGGCCTGACGGACCCACCAGCCCATCACCATGAACTACCTCCGCCGGCGCCTGTCAGACAGCAGCTTTGTGGCCAACCTCCCCAACGGCTACATGATGGATCTGCAGAGGCCGACCCCTCCAGGCTCATCCACTTCGTCCACTTCTTCCCCCGCCTCCCCGGCCACAGAGAGGCGGCAGCCCCCGAGCATCCCCACTCCGGCCTCCAACCCGGCCTCAGGCTCGGGGCCAGGCTCAGGCACGGGCACGGGCTCAGCTTTGGGCACAGGGAGCTTCCTCAGCTCCTTCTCCAGCGTGGTGAAGAGTGCTCAGATGGCCCAGAACGTCGCCGCCGCTGCACACGCCAAATCTGCAGCAACCGCAGCTGATGGAGCCTCAACAGGAAGCAGTCAGCCCCCTAAACCTGTCATACGCAAGCCCAAGATCCTGCTGGTCATCGATGATCAGCACACCGACTGGGCAAAGTATTTTCGAGGGAAGAAGCTGAACGGAGAGTATGAGATCCGGGTGGAGCAGGCGGAGTTCTCCGAGATCAACTTGGCCTCCTACGTCAACTCGGGATGTATGGTGGACATGCAGGTCAACAAAGGTGGCACCAGAGTGGTCAGGTCCTTCAAGCCAGACTTCGTCCTGATTCGCCAGCACGCCTACAGCATGATCCCCGGTGACGATTTCAGGAACCTTGTGATCGGCTTGCATTTCGGCGGCGTCCCGAGCAGCAACTCTCTCTTCTCCATCTACAACTTCTGCAGCAAACCTTGGGTGTTTTCTCAGATGATTAAGCTCTACCATTCCCTCGGCCCTGAGAAATTCCCCCTGAATGAACAAACCTTCTATCCCAACCACATGCAGATGGTAACAACCCCTTCCTACCCTGTGGTGGTCAAGATGGGTCATGCCTACGCTGGCATGGGAAAGATCAAAGTGGAAAACCAACAGGACTTCCAGGACATCACCAGCGTGGTGGCTCTGGCCCGGACCTACGCCACCACCGAGCCCTACGTCCAGTCCAAGTATGATATCCGCATCCAGAAGATCGGCAACAACTACAAGGCTTACATGAGAACGTCCATCTCTGGAAACTGGAAGGCTAACACGGGCTCTGCTATGTTGGAACAGATCGCAATGACTGACAGATATCGGCTGTGGGTGGACTCCTGCGCTGAGATGTTTGGTGGCCTAGACATCTGTGCAGTGAAGGCCGTCCATGGAAAAGACGGCAACGACTATATCATCGAGGTGATGGACAGCTCCATGCCTCTGATTGGTGAGCACGTGGAGGAAGATAGACAGCTGATCACAGAGCTGGTTATCAACAAGATGGCCCAGGTGCTGCTCGGAGTTTCCACACCTCAGACTTCCTCTGTCAAGACCACACAGCCCAGACGAGGGGGACACCGCTCTGCTTCCGCCTCTCCATCTCAGTCGGCCCAGGGTTCACCTCAGCGAGCCCGATCAGCCAGCACCTCACCCAGCCAGGCCTTCCAGCCCGGGCCCATCCCTGCCACCTCCGGGCCCGGAGCTCCGAAACAGTCCCCACAGCTGAACAAATCCCAGTCTCTGACCAACACCTTCACGGAGACGTTACGAGGAAGCCTGACCGACGATGAGGCCAAAGCTGAGACCATCCGCAGCCTCCGACAGTCCTTCGCCAGCCTCTTCTCCGACTAAAAGCCTCTCCAGAAGCTTCCTTGTTCTGTTAGTTGTCAggtttgaaaacaaaacaaaaaaaaaacaaccctgaCTGGTTCATCTGTTGTGGGAGTGTCCCTCCACCTCAGAGCCTCAGCTTCCTGTtccttctctttccttctcaCTGTTTGTGAAGTTTAACACACGGTGCAACCCGCTGTCCTCAGATCAATGATACATCTATCACTAGAAAGGCCAATAGATATTGGGGTTCTAACATAAAGGCCAGTGTGTTGACTGAAGATGTCAAACTTTAAAAGCTGACACATTTGCATTGGTCTTCCTTACAGGAGATGTTAAAGAGATGTAGGATGTCAGTTCAGTGCAGTCAGCTGATGGCCTTTCTAGTGGTAAGTAATAACAGTAAATAACTCGTAGCTCATAATGCTTGGTATATAGTCGTAATTCTGCATTCTGTTTGTCCAACCAGTGAAACTGTTCATTATTGGGTCGTGtcttatacatatatacacgtATACATTTAATTATAACATTGATCGCAGCTTCCAAACCGTTTGCAGATGTCTGCCGCAATATTCTTATCTGAAACTGTTCCGGTTAACTCATGAGAAATGTACTGAATCCTCACGGTTCACCAGCGATTTTAAGCATCTTGCCAGCAGCCACATTTCTCGTACATCCATGTGCTGTAGACACATATTGGCTTACGTAGTGACTCCTCTACTTAACATTACCAAAGTGCTTTTTAATAATATCATAAAAC
>XM_039791789.1
gagagagagggcttGGCTGGGAGGCTGAGGAGGACCGTGGACTTGAgcgcagaagaagaagaagcagaagcatcagaagaagaagaagaagaggaaggtcTCCATCATCCGACACTTGCTCATCACTGACCACCGCTCAGGATTTCAAGCATtcttccccctctcctcctgtGGCCTGACGGACCCACCAGCCCATCACCATGAACTACCTCCGCCGGCGCCTGTCAGACAGCAGCTTTGTGGCCAACCTCCCCAACGGCTACATGATGGATCTGCAGAGGCCGACCCCTCCAGGCTCATCCACTTCGTCCACTTCTTCCCCCGCCTCCCCGGCCACAGAGAGGCGGCAGCCCCCGAGCATCCCCACTCCGGCCTCCAACCCGGCCTCAGGCTCGGGGCCAGGCTCAGGCACGGGCACGGGCTCAGCTTTGGGCACAGGGAGCTTCCTCAGCTCCTTCTCCAGCGTGGTGAAGAGTGCTCAGATGGCCCAGAACGTCGCCGCCGCTGCACACGCCAAATCTGCAGCAACCGCAGCTGATGGAGCCTCAACAGGAAGCAGTCAGCCCCCTAAACCTGTCATACGCAAGCCCAAGATCCTGCTGGTCATCGATGATCAGCACACCGACTGGGCAAAGTATTTTCGAGGGAAGAAGCTGAACGGAGAGTATGAGATCCGGGTGGAGCAGGCGGAGTTCTCCGAGATCAACTTGGCCTCCTACGTCAACTCGGGATGTATGGTGGACATGCAGGTCAACAAAGGTGGCACCAGAGTGGTCAGGTCCTTCAAGCCAGACTTCGTCCTGATTCGCCAGCACGCCTACAGCATGATCCCCGGTGACGATTTCAGGAACCTTGTGATCGGCTTGCATTTCGGCGGCGTCCCGAGCAGCAACTCTCTCTTCTCCATCTACAACTTCTGCAGCAAACCTTGGGTGTTTTCTCAGATGATTAAGCTCTACCATTCCCTCGGCCCTGAGAAATTCCCCCTGAATGAACAAACCTTCTATCCCAACCACATGCAGATGGTAACAACCCCTTCCTACCCTGTGGTGGTCAAGATGGGTCATGCCTACGCTGGCATGGGAAAGATCAAAGTGGAAAACCAACAGGACTTCCAGGACATCACCAGCGTGGTGGCTCTGGCCCGGACCTACGCCACCACCGAGCCCTACGTCCAGTCCAAGTATGATATCCGCATCCAGAAGATCGGCAACAACTACAAGGCTTACATGAGAACGTCCATCTCTGGAAACTGGAAGGCTAACACGGGCTCTGCTATGTTGGAACAGATCGCAATGACTGACAGATATCGGCTGTGGGTGGACTCCTGCGCTGAGATGTTTGGTGGCCTAGACATCTGTGCAGTGAAGGCCGTCCATGGAAAAGACGGCAACGACTATATCATCGAGGTGATGGACAGCTCCATGCCTCTGATTGGTGAGCACGTGGAGGAAGATAGACAGCTGATCACAGAGCTGGTTATCAACAAGATGGCCCAGGTGCTGCTCGGAGTTTCCACACCTCAGACTTCCTCTGTCAAGGGGGACACCGCTCTGCTTCCGCCTCTCCATCTCAGTCGGCCCAGGGTTCACCTCAGCGAGCCCGATCAGCCAGCACCTCACCCAGCCAGGCCTTCCAGCCCGGGCCCATCCCTGCCACCTCCGGGCCCGGAGCTCCGAAACAGTCCCCACAGCTGAACAAATCCCAGTCTCTGACCAACACCTTCACGGAGACGTTACGAGGAAGCCTGACCGACGATGAGGCCAAAGCTGAGACCATCCGCAGCCTCCGACAGTCCTTCGCCAGCCTCTTCTCCGACTAAAAGCCTCTCCA

Function

symbol description
syn3 Predicted to enable ATP binding activity. Predicted to act upstream of or within neurotransmitter secretion. Predicted to be located in synaptic vesicle. Is expressed in several structures, including DEL; Rohon-Beard neurons; central nervous system; olfactory epithelium; and retinal neural layer. Orthologous to human SYN3 (synapsin III).

NR:

description
PREDICTED: synapsin-3

GO: NA

KEGG:

id description
K19941 SYN; synapsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791788.1 True 2586 mRNA 0.53 14 19923771 20047996
XM_039791789.1 False 1833 mRNA 0.58 13 19923771 20047262

Neighbor

gene id symbol gene type direction distance location
LOC120553510 slc16a7,LOC103364250 coding upstream 296058 19594413 ~ 19627713 (+)
atp23 atp23,LOC102777000,LOC106609469 coding upstream 416180 19504380 ~ 19507591 (+)
LOC120553398 NA coding upstream 428448 19487602 ~ 19495323 (+)
LOC120553799 NA coding upstream 440619 19478917 ~ 19483152 (+)
LOC120553798 LOC104924523,LOC103359230,LOC104954154,LOC103382963,LOC106531213 coding upstream 444496 19473150 ~ 19479275 (+)
LOC120553415 NA coding downstream 76645 20124641 ~ 20162039 (+)
LOC120553750 NA coding downstream 126455 20174451 ~ 20184363 (+)
LOC120553751 NA coding downstream 137086 20185082 ~ 20190908 (+)
plxnc1 NA coding downstream 164791 20212787 ~ 20260428 (+)
elk3 LOC104930592,LOC102779228,LOC102209493,LOC102296588 coding downstream 239268 20287264 ~ 20298086 (+)
LOC120553527 NA non-coding upstream 1917 19921100 ~ 19921854 (+)
G228922 NA non-coding upstream 7454 19916115 ~ 19916317 (+)
G228912 NA non-coding upstream 52048 19869393 ~ 19871723 (+)
LOC120553215 NA non-coding upstream 82109 19834007 ~ 19841662 (+)
G228905 NA non-coding upstream 113191 19809675 ~ 19810580 (+)
G228989 NA non-coding downstream 250738 20298734 ~ 20301441 (+)
G229058 NA non-coding downstream 391462 20439458 ~ 20448557 (+)
G229060 NA non-coding downstream 394671 20442667 ~ 20454788 (+)
G229108 cdc123,LOC102776001 non-coding downstream 515067 20563063 ~ 20565180 (+)
G229130 NA non-coding downstream 559236 20607232 ~ 20607530 (+)
LOC120553104 LOC103364246,LOC103152567,LOC106913527,LOC103459763,LOC103459764,LOC106945279 other upstream 17819 19852928 ~ 19905952 (+)
LOC120553210 LOC104943308 other upstream 84389 19631937 ~ 19839382 (+)
G228784 LOC103359233,LOC104943309,LOC100709697 other upstream 510067 19410490 ~ 19413704 (+)
LOC120553164 NA other upstream 568220 19352983 ~ 19355551 (+)
LOC120553630 muc19 other upstream 1068457 18822832 ~ 18855314 (+)
LOC120553749 NA other downstream 99082 20147078 ~ 20173407 (+)
LOC120553418 NA other downstream 142932 20190928 ~ 20225185 (+)
ucmaa NA other downstream 334397 20382393 ~ 20391406 (+)
LOC120553023 LOC106946322,LOC103151516,LOC104922640 other downstream 1100271 21148267 ~ 21150351 (+)
arid2 arid2 other downstream 1328876 21376872 ~ 21429238 (+)

Expression


Co-expression Network