atxn10 (atxn10)


Basic Information

Item Value
gene id atxn10
gene name atxn10
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17196941 ~ 17207454 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791800.1
cTGACCAATCCCCACTcctgcctaaacctaaccacgTCTAGTGGATCCGATTTAGCATTTACCAGGCAAACAAACATGGCAAATACCGACAGCACCCTGGACATCTCACCGTCTATCGCTGGTATTTTGAATGAAGAACACTGCCCTGAACACTTACAGGTTTTAAAAACATTCACGGCTGCGTTACGGGACAAGGAATACAGAGATGCTGTGAAGGAGGAGGCGTTCTCCATTCTTCTAAATGTTTTGTCCCGACTGTGTGATGAGCTTCATGCTGCCAGCTGTGACGATCAGGACCTGCAGTCTGTCGCCCTGCAGCTGCAGTTGACCGCTGAGTGCTTTAGGGCTCAGAGGAACTCCTGTGTCCAGAGCACTCGCAACCAGAGTCTGCTCAGgGAGCTTGGTTTCATTGATGTATCCCTTAAACTCCTAAGCTTCTTTCAGACCGCACATCTGGAGAGCAGAGATGGCATATTTGAACCTCTTCGTTGTGGGATCCAGTTTCTCGGTAACTTATCGGTTGGAAACCAAATGTGTAAAGATGACATTTGGCAGCTGAGCTTCCCAAATCTTCTCCTGCAGCTGCTCAGTGTTGATGATGAGAAGGTGGTAAACTATACCTCCATGGTACTCCACACATGTCTGGATGAAGCCAAAGTGGAAGAACTGTCTGATCCTCAGAACATCCAGCTGGCACTCAGGGTGATGGAGCTCTGTAGGACCCAACCTGACCTGGACTGGACGGTTCTCATTGCTACCCAGTATTTCCTCAAGTCTTCAGCTCTGGTGGAGAGCATGTACTCTGGGATGTCTCACCATGAAAGagttacTCTATTAGAGCTGCTCTTTGCCCAGCTACAAGAGGAAGACTCTTGTGGTATCCCTCCTAGTGTTGCTCGCTTCCTGGCTACTTCCTTCCAGAAATGTTGTGGAGCTGTGTTGACACTCGCCACTGGCTCAGCTTCCAATGATGAGGTCCTGCAGGAGGCACTGACCGTGATTAGTCTGCTGGACGTGCTGTGTGAGATGACCTCAGACCACAGGCAGTTCATGTTTCTCCAGGACCATCCTGACCTTCTAGTGACCACTGTTGAGCTCCTGGGGCAGGTACATGCTATAGGGAAGGCCAGTAAGAATATTTTCAGTGCTGCTCAGAACTTCTCCTCCTTCAGTGGAGATGGAGACGCTTCCTCCCATTCTCCTGTCATCAGTTTCAAGGCCCACCTCATCCGGCTGATAGGAAACCTATGTTACAGCAATGCCAACAACCAGAACAAGGTGAGAGAACTGGAAGGCATCCCCCTCATCTTGGATAACTGCAGCATAGATAGCAACAACCCATTTATCAGTCAGTGGGCCATCTTTACCATCAGGAACCTCTTAGAACACAACGTGCAGAACCAGGAGCAGGTCAGCGCCCTGGAACGTCGTGGCACCACGGACTACTCTGCGCTCAAGGAGTTGGGTTTCTTGGTGGAGGAGCGAGATGGAGGCTTGCTGCTCAAAACTGTGAGGAAAGACTGTTGAAAACCTTGGAGGAGCACCCGGAGAGAGGAGGCCCCCAACCCGCAAGCAGGTTTTCATGCAAAGTATTTGTTTAGAAAGGAATAAAGtacatgtgcacacatacacacttatgTGAACATGTGCTCTTGTTGTGCTACAAGCCTCCATTAATGTTACCTAATACTTAAGCTTCTTCTGCGGGTGAATTACCTGTCCACTACTAAACATATACATGTTGTGTCTGTCCAGAATAACTTGACAGCCACACAGCCGCTAGATTAAGAAGAAAAATGCTTTAGAATTATATATTTCTATCAGAGAAGTATGTTTAAATTACTTTTCTACCTGAGTAATGCTTGCACTCATGCCCAGATGGGGCTTAAGATATTATTGATACACAAAAGGCCCATGGGGTCACCCTGGTAAAAAAGCAAAGGTCAAGACATCAGGAGCTCTTGTTTTGTCTTGACCTGGGTCTAGGAAATGAAGAGTTTGGGAGAAGCGAACGCATGCTGGTACCTTTTGGCAGAGCTGATGCTTTGTGGTATAATCCAAAGACAAAGAGCACCGCAGTGTCCGGGCTTTTCACTTTTCACAGACACTGATGTTACCAGCAGGGGTTGGGATTTAATCCCAGGCCCATAGTGACTTCTGCAGTAACCGCGAAAAACAGAGAATGACCAAAACATGAAGTAATCAACCCCCTCACCGCCTTACCTACTTAAATGGTGGTGTCGTTGCCAGGGGGACATTCAAACGCTTAAAACAATTTCTCTAAACTGGTgtgatattaatattataatctAAGGACATCTAAGTGCAAAATGCAATACTAAAACTAATAACTGACGCTATGCATGTTTTGTAATTTAAAAACTGCTCAGTATACAGCATGAGCTTATACTCAACATAGTGAATTTCATCTTATTCTTAATGATCTTTTTTTCCATCTTATTGCATAGTACTATAGATACATACTGTAAGAGATGAGGTCTTATGGCATGCATCATAGATCGTTATCCATCTTTAAACTCACAACATTAAGTACATGTTTTAGACCGCTTCTCTTTGCTCTGGGCAAGCTACATTTGAGTTTTTTACCAGACTGCATAGACTTTCTTAGAGATTTAGTGAATATGGTATTTTCTgtttagaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatttgatAAGAGATGGTGATTCTGGATCAGTAGACAACGCATGAGAGCATACTGAAAGTGTATGTCCAAAGAGTGAGTGGGAAGCATTAGTTTGCAGAATGACATCCCTCCCTGCTCCTCCCGTTGCTGGATAAGCTGAACAGTCCTGACACCTCAACAATGCAGCGCTTTACTGGCCTGCTCGCACCCTGCCCCACCCTGTTTGCTCTGCCTCTGATTTttaatgacaaaatgtattGAAACAATCGGCTGGACTCTCCCCTCAATCCGCCGGCATAGTGAAGGGAGCTTATGTGGTTCCGGTCCCCAGGATTTCAGACAGCTAACAAAACAGCTGTTACTTGCGCTCGACTGGCTGGCTGCAATGCTTTTCAGCCCCACAGGAAAGAGGCTGTGCAAGTCAGCCGGGCTGAATGAGGTGGCATGGCCGCGGCTGCCTGTTCACCTCCTAACACATTAGTACCACATCAGTCGAGGCCAGAAGTTCTTGTGTTTCCCATATCAGCGTTTTATACCACAGGCCTCTACTATATAGTATTTGTGCCTTCTGGTTTGATATTTGCCTTCAGCAAAAAACAATTGTCAGGATGTAaagtatgttttatgtttgggtcaaataatgtttatataatgcttaataaagtattgtgtgtgtgtga

Function

symbol description
atxn10 Predicted to be involved in neuron projection development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 10. Orthologous to human ATXN10 (ataxin 10).

NR:

description
ataxin-10

GO: NA

KEGG:

id description
K19323 ATXN10; ataxin-10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791800.1 True 3485 mRNA 0.46 11 17196941 17207454

Neighbor

gene id symbol gene type direction distance location
pparaa ppara coding downstream 61811 17116753 ~ 17135130 (-)
cdpf1 cdpf1 coding downstream 80488 17114008 ~ 17116453 (-)
LOC120553682 NA coding downstream 84498 17109537 ~ 17112443 (-)
sapcd1 NA coding downstream 209386 16983903 ~ 16987555 (-)
prdm4 prdm4,LOC102777312 coding downstream 217906 16972532 ~ 16979035 (-)
LOC120553673 NA coding upstream 1172 17208626 ~ 17220357 (-)
trim24 LOC103366983 coding upstream 14880 17222334 ~ 17234693 (-)
LOC120553454 LOC104933464,LOC108241015,LOC102202158 coding upstream 98769 17306223 ~ 17331378 (-)
creld2 creld2 coding upstream 358117 17565571 ~ 17570648 (-)
zbed4 zbed4,LOC102794369 coding upstream 368684 17576138 ~ 17583883 (-)
G228401 NA non-coding downstream 58666 17137270 ~ 17138275 (-)
G228363 NA non-coding downstream 189941 16952943 ~ 17007000 (-)
G228360 NA non-coding downstream 247135 16914607 ~ 16949806 (-)
G228295 NA non-coding downstream 365702 16824829 ~ 16831239 (-)
G228290 NA non-coding downstream 449901 16746743 ~ 16747040 (-)
G228423 NA non-coding upstream 13751 17221205 ~ 17222228 (-)
G228439 kdm5a non-coding upstream 36011 17243465 ~ 17243980 (-)
G228474 NA non-coding upstream 65494 17272948 ~ 17275477 (-)
LOC120552976 NA non-coding upstream 194794 17402248 ~ 17402832 (-)
G228522 NA non-coding upstream 310209 17517663 ~ 17600185 (-)
slc37a3 slc37a3 other downstream 176206 17007724 ~ 17020735 (-)
G228291 LOC103356441,LOC102298269,LOC102212027 other downstream 373509 16748842 ~ 16823432 (-)
G228191 NA other downstream 1405088 15771238 ~ 15791853 (-)
znf800b znf800,LOC103364713,LOC103355189,LOC108412280 other downstream 2106958 15055475 ~ 15089983 (-)
grm8a grm8 other downstream 2143656 14634110 ~ 15053285 (-)
G228465 NA other upstream 87668 17295122 ~ 17302198 (-)
tafa5a fam19a5,LOC103356475,LOC102793695 other upstream 623162 17830616 ~ 18100995 (-)
gramd4a gramd4,LOC103376144 other upstream 1155805 18363259 ~ 18421407 (-)
LOC120553633 slc2a13,LOC103369283 other upstream 1530942 18738396 ~ 18823090 (-)
sox5 sox5 other upstream 1821155 19028609 ~ 19270336 (-)

Expression


Co-expression Network