atp6v1e1b (LOC100708725,LOC104926722,LOC103358108,LOC106937970,LOC103156918,LOC106914460)


Basic Information

Item Value
gene id atp6v1e1b
gene name LOC100708725,LOC104926722,LOC103358108,LOC106937970,LOC103156918,LOC106914460
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 8918234 ~ 8926796 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791812.1
GGTCGACTCGGCCGGAAGTAAACATCATGTGACGACGAAAATCAGCTGATCCTCCGTAGACATCTTTACGAGTCACGACTGCGGCGATTAATTCATACCTCATCTTCTGTGATTTTCGGGCCTCGCGGATCtttgacagctgcaaccatggcGCTCAGCGATGCCGATGTTCAGAAGCAGATCAAGCACATGATGGCCTTCATTGAGCAGGAGGCCAATGAGAAGGCAGAAGAGATTGATGCAAAGGCAGAAGAAGAGTTCAACATCGAGAAGGGCCGCCTGGTCCAAACTCAGAGGCTGAAGATAATGGAGTACTACgagaagaaagagaagcagatcgagcagcaaaagaaaatTCAAATGTCTAACCTGATGAACCAGGCTCGACTGAAGGTGCTGAAGGCCCGGGATGATATGATCTCGGAAATGCTAAACGAGGCCCGCCAACGGCTTGGTAATGTCGCAAAAGACCCAGCCAGGTATCCAGCTCTGATGGACGGATTGATCTTACAGGGATTCTATCAGCTTCTGGAGCCCAAAGTGACTATTCGCTGCCGTAAACAGGACGTGCAGATGGTACAGGCATCCATCCAGAGGAATATTCCTATATTTAAAGCAGCTGTGAAGATGAACATCGAGGTCCGCATCGACCAGGATAACTTCATCCACCCTGACGTTTCTGGAGGTGTTGAGCTCTATAATGGTAACGGGAAGATCAAGGTGTCCAACACCCTGGAGAGCAGACTGGACCTCATGGCTCAGCAGATGATGCCTGAAATCCGAGTGTCTCTCTTCGGGGCCAACCCGAACCGCAAGTTCCTGGACTAAATACCTCTGCTGTATTAAAGAACAgctctcctttttattttttattttgtcacatGAAAGACGCATTCCTCTGTCTGTGAAACGAATCTCCCATGCAAAAGAGACTCATTGTTGTTGTGTGATGTatcgctgtttttttttttttctgtgcattAAGGGACACGATAAACCCTGCAGCTCAACGTTACAGATGCGCGTCGTGGGTACTGCGCGGTTGTTGTCTCGGCTGCTCCCCTTCGAGGGTCTCAGTTTACACTGATAAGTCCGGTTCGACAGGATCTGGCGATTGGCTGGATGTTTAACAAGTTGTCCTCTAATTGGATCATGACAAGCACAGCGTCCGTGTCACGGTTTTTCCACCTCTACCCCGTATTAAAATACGTTGCATGGGACATTGTGTTGCTAATGGACATCTGCTCCAACCAATTACCGAGATAATGAATAGCATCCTAGGAACAAAACTGAAGACCGTACATGACCTTACAGAGTAAATTTATTGATGTATGTTATTCTGTCATGAATTAAACGAGTGGGTGATATCATTCCAGAGGGTGCACTGTATGTATATGAGGTTTCCAGATTAAATTATATCGTAtg

Function

NR:

description
PREDICTED: V-type proton ATPase subunit E 1 isoform X1

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain cellular_component
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02150 ATPeV1E, ATP6E; V-type H+-transporting ATPase subunit E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791812.1 True 1425 mRNA 0.47 10 8918234 8926796

Neighbor

gene id symbol gene type direction distance location
gnptab gnptab coding upstream 73209 8818570 ~ 8845025 (+)
washc3 ccdc53 coding upstream 111064 8802548 ~ 8807170 (+)
acss3 acss3 coding upstream 352879 8515588 ~ 8565355 (+)
myf5 myf5 coding upstream 447200 8468661 ~ 8471034 (+)
myf6 myf6 coding upstream 454140 8462324 ~ 8464094 (+)
LOC120553730 LOC103358107,LOC100702291,LOC101477928 coding downstream 276 8927072 ~ 8932977 (+)
LOC120553653 fgf6,LOC100708453,LOC101478942,LOC103358103 coding downstream 79762 9006558 ~ 9010187 (+)
fgf23 fgf23 coding downstream 90290 9017086 ~ 9020129 (+)
llph llph coding downstream 160377 9087173 ~ 9089548 (+)
guca1a LOC103358093,LOC102788764 coding downstream 190009 9116805 ~ 9119985 (+)
G226641 mybpc1 non-coding upstream 34557 8881817 ~ 8883677 (+)
G226638 NA non-coding upstream 47523 8870018 ~ 8870711 (+)
LOC120553277 NA non-coding upstream 297739 8617814 ~ 8620495 (+)
G226554 NA non-coding upstream 509575 8341630 ~ 8408659 (+)
G226556 ppp1r12a non-coding upstream 558952 8356330 ~ 8359282 (+)
G226720 NA non-coding downstream 8254 8935050 ~ 8935551 (+)
LOC120553611 NA non-coding downstream 15045 8941841 ~ 8943537 (+)
G226716 NA non-coding downstream 85346 9012142 ~ 9012662 (+)
G226717 NA non-coding downstream 86047 9012843 ~ 9013646 (+)
G226747 NA non-coding downstream 88819 9015615 ~ 9015901 (+)
rps16 rps16,LOC103382554 other upstream 485537 8426635 ~ 8432697 (+)
LOC120553156 LOC104945813 other upstream 1348931 7566655 ~ 7569303 (+)
LOC120553154 LOC104945813,LOC103356648 other upstream 1386157 7525892 ~ 7532077 (+)
ascl1a ascl1 other upstream 1491980 7423618 ~ 7426254 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other upstream 1517835 7370442 ~ 7400399 (+)
lhfpl3 lhfpl3,LOC101483460 other downstream 207798 9134594 ~ 9173220 (+)
ndufb2 ndufb2,LOC102790702 other downstream 310430 9237226 ~ 9241349 (+)
G227121 kera other downstream 1770458 10697254 ~ 10699718 (+)
G227141 dcn,LOC103382665 other downstream 1805273 10732069 ~ 10737503 (+)
impdh1b LOC104968094,LOC103355171,LOC102293685,LOC102194436,LOC104918784 other downstream 2021489 10948285 ~ 10986201 (+)

Expression


Co-expression Network