lhfpl3 (lhfpl3,LOC101483460)


Basic Information

Item Value
gene id lhfpl3
gene name lhfpl3,LOC101483460
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 9134594 ~ 9173220 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791817.1
GACCTCCCTTCACACAGAGCGGAGGATGATCCCCGGGGCCCCCAGCACGACCACCACCATGCTCCCCGCCGCCGAGGCTGCCAAAATTTACCAGACCAACTACGTGCGCAACTCCCGCGCCATCGGCACCCTATGGGCCATCTTCACCATCCTCTTCGCCATCGTCAACGTGGTGTGCTTCATCCAGCCGTACTGGATCGGAGACGGAATGGACACCCCGCAGGCGGGCTACTTTGGTCTGTTCCACTACTGCATCGGGAACGGGCTGTCCCGGGACTTGACCTGTCAGGGCAGCTTCACCGAGTTCAGCACCATCCCCTCCGGTGCGTTCAAGGCCGCGTCCTTCTTCATCGGCATGTCCATGGTGCTGGTCCTCACCTGCATCGGCTGCTtcgctctcttcttcttctgcagcACTGGCACCGTGTATAAGATCTGCGGCTGGATGCAGCTCGCTGCAGGTACATGTCTGATTCTAGGCTGCATGATCTACCCGGACGGCTGGGACAGCGACGAGGTGAAGCGCATGTGTGGCGAGCAGACGGACAAGTACACGCTGGGGGCCTGCTCGCTGCGCTGGGCCTACATCCTGGCCATCATGGGCATCTTGGATGCTCTCATTCTTTCCTTTCTGGCCTTCGTCCTGGGGAACCGTCAAGACAGTCTGATGTCTGAGGAGCTGCTGGGAGACAAGAGCGGCAATAATACCATATAATATCTGGTCTTGCTGCCTAGGCATGATGTTACTTCAGGATCCAGCTTCCCTCTCCTGGTCCAGCCTGTGGCTGAGATGCAGAGCTTATGTGTGGGGAAAGAACAGATCAAAGAAGAGGAAGTCTGGAAGAGGTCATACAACCTTGGTGGGAACCAGGATGCCACCTGTCCTCTCTGAAAGCTCCCCCCTGTAAAATAGCCTTCTCATTCAACTCAAACTGCTTAATCTCACAGGATAAATTCTCAAAAAGACTTTCTAAAAGTTTACCTGTGTTGGTATGTCACTGCATCATCTTTTCTAGAGCTGTTCAAACTGAAATTATTGTCTGTGTGGATATGAGGAAGGCTGCCGGTGAGCAAGTTAAGctgaattttatttatttaaagactCTTCATGCGGTAATATAGCTCCAGGACACACACCACTGAGTGAAGGCTGCTCAAATCGAATTAAATCAAAACAACTTTGCCAGACTTCGACTGACACAAATAAGACTTGAGGTCAAAGCTATCAGATCTAATTTCTTATCAAGTCAACAACAACTCTGCAACGGACAGTTTGACCTTTGATTTAAAGAAGAGCAAAGTGAGGACTGAAGAAAATGAGGCTGgacaaaagaagagaaagagcagtattgttttgttatatttacATGTTTGATGTTATAGAATCAAAGGTAGTAATTAGAGGTTTTGCTGGTGACaactttgcaaaaaaaaaaaaaaaaagctaaaaaggaGAAAACATCAATTGTATCAAGTACATAATCTGTGTATAGCTATATGTTTATTATGTCCCTGTATTTTGTCTTGACTTTGAAATGTACACTTTGAAATGTCAAGCTATTGGTCCATTATTAGTGTGTGCCATACAATATCTTGTAATCTGACAGTATTGTGGAGTACTTAAGGGAGTAAGAAAAGTTAAACTGAACATTAATTGAAGCTGGATAAGTTTGACTCTTTGTATCTTTTTGTTGCCTGTCATTCTTCAGTCTCCCCGCTAAAGGAGTTAGTGGAGTGTGTCTTACATTAAAACTGTTATTGTAACTATGATGGAACAAAAGAAACATGAAAGAAATATGCTCATTTGCTTTTTGGTGTAGAGTTAGCATTAGCTACCTGGGTAAGAATCAGAACTCAGAATCACAATCAGAGAAGGGTTAAGAGACAGTGGGGATTACAGGCCTTGTTAATGAGGCCGACAGCAGTCGGGAAGAAGCTATTTGTGTGGCGTGAAGTTTTGGTCCTGATGCGTGTTTCTAGAAGTTTTTGACCAGGGTGGTAGAGCTCGACGAACAGGCAGCCAATCACATTCTCAGCAGAGAAGAAGACCAATTCTCTCACCAACTCTCCGCTGGAAAGCTAAGTATAATTCCTAAAATGTTGAATTCCTTTAAcaccttttttaaacaaagtagGAGTGTCAGACAGcaacattatattttgtaagtGGCCCTTATTTGTTATTATTCCTTTTACTTCAGGTACCATGTCACACTAAAGGagtcatgtgtgtttgtgtcactcaTCAAGTCGCATCCTTGGGCCCAAAGGTGTAAGGTGGAGGCAGTATTTCTTTCTCCCAACTTATGTTGAGACTCACAAGAACCCTTTTCTGTATAAATCTGTCTAGATTATTCACTTCTAATATGGAATCAAAGTATGAGACATAATAAAAAATTACCAAATTTA
>XR_005638164.1
GACCTCCCTTCACACAGAGCGGAGGATGATCCCCGGGGCCCCCAGCACGACCACCACCATGCTCCCCGCCGCCGAGGCTGCCAAAATTTACCAGACCAACTACGTGCGCAACTCCCGCGCCATCGGCACCCTATGGGCCATCTTCACCATCCTCTTCGCCATCGTCAACGTGGTGTGCTTCATCCAGCCGTACTGGATCGGAGACGGAATGGACACCCCGCAGGCGGGCTACTTTGGTCTGTTCCACTACTGCATCGGGAACGGGCTGTCCCGGGACTTGACCTGTCAGGGCAGCTTCACCGAGTTCAGCACCATCCCCTCCGGTGCGTTCAAGGCCGCGTCCTTCTTCATCGGCATGTCCATGGTGCTGGTCCTCACCTGCATCGGCTGCTtcgctctcttcttcttctgcagcACTGGCACCGTGTATAAGATCTGCGGCTGGATGCAGCTCGCTGCAGGTACATGTCTGATTCTAGGCTGCATGATCTACCCGGACGGCTGGGACAGCGACGAGGTGAAGCGCATGTGTGGCGAGCAGACGGACAAGTACACGCTGGGGGCCTGCTCGCTGCGCTGGGCCTACATCCTGGCCATCATGGGCATCTTGGATGCTCTCATTCTTTCCTTTCTGGCCTTCGTCCTGGGGAACCGTCAAGACAGTCTGATGTCTGAGGAGCTGCTGGGAGACAAGAGCGGCAATAATACCATATAATATCTGGTCTTGCTGCCTAGGCATGATGTTACTTCAGGATCCAGCTTCCCTCTCCTGGTCCAGCCTGTGGCTGAGATGCAGAGCTTATGTGTGGGGAAAGAACAGATCAAAGAAGAGGAAGTCTGGAAGAGGTCATACAACCTTGGTGGGAACCAGGATGCCACCTGTCCTCTCTGAAAGCTCCCCCCTGTAAAATAGCCTTCTCATTCAACTCAAACTGCTTAATCTCACAGGATAAATTCTCAAAAAGACTTTCTAAAAGTTTACCTGTGTTGGTATGTCACTGCATCATCTTTTCTAGAGCTGTTCAAACTGAAATTATTGTCTGTGTGGATATGAGGAAGGCTGCCGGTGAGCAAGTTAAGctgaattttatttatttaaagactCTTCATGCGGTAATATAGCTCCAGGACACACACCACTGAGTGAAGGCTGCTCAAATCGAATTAAATCAAAACAACTTTGCCAGACTTCGACTGACACAAATAAGACTTGAGGTCAAAGCTATCAGATCTAATTTCTTATCAAGTCAACAACAACTCTGCAACGGACAGTTTGACCTTTGATTTAAAGAAGAGCAAAGTGAGGACTGAAGAAAATGAGGCTGgacaaaagaagagaaagagcagtattgttttgttatatttacATGTTTGATGTTATAGAATCAAAGGTAGTAATTAGAGGTTTTGCTGGTGACaactttgcaaaaaaaaaaaaaaaaagctaaaaaggaGAAAACATCAATTGTATCAAGTACATAATCTGTGTATAGCTATATGTTTATTATGTCCCTGTATTTTGTCTTGACTTTGAAATGTACACTTTGAAATGTCAAGCTATTGGTCCATTATTAGTGTGTGCCATACAATATCTTGTAATCTGACAGTATTGTGGAGTACTTAAGGGAGTAAGAAAAGTTAAACTGAACATTAATTGAAGCTGGATAAGTTTGACTCTTTGTATCTTTTTGTTGCCTGTCATTCTTCAGTCTCCCCGCTAAAGGAGTTAGTGGAGTGTGTCTTACATTAAAACTGTTATTGTAACTATGATGGAACAAAAGAAACATGAAAGAAATATGCTCATTTGCTTTTTGGTGTAGAGTTAGCATTAGCTACCTGGGTAAGAATCAGAACTCAGAATCACAATCAGAGAAGGGTTAAGAGACAGTGGGGATTACAGGCCTTGTTAATGAGGCCGACAGCAGTCGGGAAGAAGCTATTTGTGTGGCGTGAAGTTTTGGTCCTGATGCGTGTTTCTAGAAGTTTTTGACCAGGGTGGTAGAGCTCGACGAACAGGCAGCCAATCACATTCTCAGCAGAGAAGAAGACCAATTCTCTCACCAACTCTCCGCTGGAAAGCTAAGTATAATTCCTAAAATGTTGAATTCCTTTAAcaccttttttaaacaaagtagGAGTGTCAGACAGcaacattatattttgtaagtGGCCCTTATTTGTTATTATTCCTTTTACTTCAGGTACCATGTCACACTAAAGGagtcatgtgtgtttgtgtcactcaTCAAGTCGCATCCTTGGGCCCAAAGGTGTAAGCAAAGACTGCCGCTCAGGAGATCCGAACACATTCAAAACTGTGGAGATGACAATGGACTTTGGGAGGAGCTCCCCAACACTGCCCCACCATACTAAACAGCACTGTGTCTGCTGTGGAGTCTTTAGGTTTTTGGTATCCACAATCTCCTAGGTCCTTAAGTGGACATCCAACATTGACACAATCAGGAAAAGGACCAGAGGATGTACTTCGCCAGATCCGAAAGTTCAAACTGCCTCAGGAGCTGCTGATCCAATTTTACACAGCATTCAGTCTTTTCTTTGCACATCCATAACTGTGTGGTTTGAATCAACCACCAAACAGGACAGGAAAAGTACAACAGTACTACAACAGTCAGGACTGCAGAAAGAATCATTATTGCAAACCTGTCCTCCACTCAGGACTTATACACACAAGAGTCAAGACACATGTCATTGTTTTATTCTAtactttttaatatatatgtttatatctTTGACCAGCGTTGTTGTAATGTTTCAGCTGTGTGTCTATTTCTGACTATGTACATTGAGAGCAACAGAAACTGGAGTCAAATTcacatacttggccaataaaaatGATTGTGATTCAGA

Function

symbol description
lhfpl3 Predicted to be involved in sensory perception of sound. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in central nervous system. Orthologous to human LHFPL3 (LHFPL tetraspan subfamily member 3).

NR:

description
PREDICTED: uncharacterized protein LOC106592871

GO: NA

KEGG:

id description
K23893 LHFPL; LHFPL tetraspan subfamily member protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791817.1 False 2409 mRNA 0.45 4 9134594 9170380
XR_005638164.1 True 2868 transcript 0.45 5 9134594 9173220

Neighbor

gene id symbol gene type direction distance location
guca1a LOC103358093,LOC102788764 coding upstream 14609 9116805 ~ 9119985 (+)
llph llph coding upstream 45046 9087173 ~ 9089548 (+)
fgf23 fgf23 coding upstream 114465 9017086 ~ 9020129 (+)
LOC120553653 fgf6,LOC100708453,LOC101478942,LOC103358103 coding upstream 124407 9006558 ~ 9010187 (+)
LOC120553730 LOC103358107,LOC100702291,LOC101477928 coding upstream 201617 8927072 ~ 8932977 (+)
LOC120553346 ergic2 coding downstream 94978 9268198 ~ 9273908 (+)
cd36 NA coding downstream 500771 9673991 ~ 9679815 (+)
chrm2a chrm2,LOC103140231,LOC106927335,LOC100534441,LOC102208075 coding downstream 779380 9952600 ~ 10029904 (+)
LOC120553071 NA coding downstream 927476 10100696 ~ 10103605 (+)
LOC120553783 LOC104962829,LOC102309285,LOC102208629,LOC100697441,LOC102795594,LOC101464871 coding downstream 931711 10104931 ~ 10107801 (+)
G226755 NA non-coding upstream 94768 9037773 ~ 9039826 (+)
G226748 NA non-coding upstream 118319 9016073 ~ 9016275 (+)
G226747 NA non-coding upstream 118693 9015615 ~ 9015901 (+)
G226717 NA non-coding upstream 120948 9012843 ~ 9013646 (+)
G226716 NA non-coding upstream 121932 9012142 ~ 9012662 (+)
G226810 NA non-coding downstream 5919 9179139 ~ 9204451 (+)
G226885 NA non-coding downstream 478027 9651247 ~ 9654254 (+)
G226918 NA non-coding downstream 578724 9751944 ~ 9754116 (+)
G226921 mtpn non-coding downstream 623253 9796473 ~ 9826525 (+)
G226922 NA non-coding downstream 633022 9806242 ~ 9806602 (+)
rps16 rps16,LOC103382554 other upstream 701897 8426635 ~ 8432697 (+)
LOC120553156 LOC104945813 other upstream 1565291 7566655 ~ 7569303 (+)
LOC120553154 LOC104945813,LOC103356648 other upstream 1602517 7525892 ~ 7532077 (+)
ascl1a ascl1 other upstream 1708340 7423618 ~ 7426254 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other upstream 1734195 7370442 ~ 7400399 (+)
ndufb2 ndufb2,LOC102790702 other downstream 64006 9237226 ~ 9241349 (+)
G227121 kera other downstream 1524034 10697254 ~ 10699718 (+)
G227141 dcn,LOC103382665 other downstream 1558849 10732069 ~ 10737503 (+)
impdh1b LOC104968094,LOC103355171,LOC102293685,LOC102194436,LOC104918784 other downstream 1775065 10948285 ~ 10986201 (+)
G227216 NA other downstream 1929616 11102836 ~ 11112905 (+)

Expression


Co-expression Network