LOC120553452


Basic Information

Item Value
gene id LOC120553452
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15770012 ~ 15772705 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791849.1
GGTTTTACAGCTCAGGAATGTAGCTGGTCAACAATTGCTAGCTTTCGTTTCACATCAGCTGGAGCTGTCGGCGGCTGATAGAGGTATCCTCAGTTTGTCACCTCGTCTCCAGCCGCAAAGGTGCCAAAACCAGCAGAATGGCCACAGCGCAGTCGGTGTTGCTGCTAGCAGTGCATATTCTGCTGATCTCAGAGTTCATCCTGGCCAAGAGGGACTACTACGACATACTGGGGGTGCCTAAAGATGCAACTGAACGCCTGATCAAGAAGGCCTTCCATAAGCTGGCCCTGAAGTACCATCCTGACCGAAACAAGAGCCCAGACGCCGAAGCCAAGTTCAGGGAGATAGCGGAAGCGTATGAGACGTTATCAGATGATAAGAGGAGGCAAGACTACGACCAGTTTGGCCACGGCCCGTCACCAGGGGggagccgaggaggaggaggaggaggaggaggagactaTAACTTTAAGCAGCACTACCAGTCCTTCAACTTTGATGACATTTTCAAAGACTTTGACACTTTTGGTCAGCGACACCAACACCACTTTCACTCCCACTCCCAAAATCAAGCCCACCAAAAGAGACAGTTTGACAGCCACTTTCAGGCCCATCGGGGGGCTATGAACAGACCGAAGAGACCGTTTCAGGAGGGGGGCTTCGGTGGAGGACTCTTTGATGACATGTTTGAGGACTTGGAGAAGATTTTCTCCTTTAACACACACAGTTCCAGGACTGACAGCAGATACCATGGCTCTGGGAAGCAGCAGTGCAGGACAGTGACCGAGCGTAGGGGCAACATGGTGACTACCTTCACAGAATGCTCCTGAGACCAGCAGAAAATGTCGCTCTACCGAGGGCAGCCACTTAGGACATTGTTGGTTTTTTAAATTGTGGTTTTGGAATTTAATGCCAATTTATCCCTTTGGTGGAATAGAGGATGGTTTTCGTGTGGCTTTTGTAATTTTCTGTATGTAAATTCCTCCAGGAACAAATATCCAAGCTGACCTGATGCTCATAGCGCAGTAATTAGCTTTCAAGGTGCATTATGTTTACTTATGATGGTGCAATCTATATAAGACTCAGGTATGGCCTAAGGTTAAAAGATAATTggaatttaaaataatttcctttttaaaggaaagAGGCAATAAGATATATTAAAACACCACAGGAACATTCATTCTGCAGCTATTCAGGCCATAATGTTATCATGAACTCTACAACATAAACCTTTTGCATGTAAAACCAGGCTCATCTAAGCATAGTGTACTCtgaacatgtattttttttcttttggtttttATTAATTATCTTAAAGATtggcaaaaattacagtttcatAAATGTCAATTCATAGCACCTGCATCAAATATTTCTGTGAAAATGAAGCTCCACATCCTGCGATGTTGGCTATTATCAACAGTTACCTCGTTTTAGTTTCTTCCTACAGAGTTGCATCTACCTTCACTAAGTCAGGGTAGGGAATTCAAATTAGTCCCATGACAAATGCTGGTAAACTTAGCCACAGGCAAAGTTTGTGTACTCTCTCAGCTGTTGTTTTGATGAGTCATCTGCCAGTCAAGCTAAACGGACTGAAGCGTTTTTCTGAACTGATCACAATGTGCAATATTTAGCACCTTTGCTCTTCATGTTGCCTCTTTCATAGACAGTGTTGTGTTAATGTCATTGCCTTATGTctgcactttgtgtgtgtgtgtgtgtgcacatgtttgtgtgtgtgtgtgtgtgtttgtgtgtgcgcagagTGGCCTGAATGTTGATTGGTTGCATAATGCTTGGAGAATGAATAAAAAGTTTCAAGAGCAAA
>XM_039791850.1
TTGTCGTGGGTGGTTTATCTGCAACTGAGAACAAACAACAGAGTATCATTAACAAGCTCTTTTTTTTAAGGCGGAGCTGGAGGTTCAAGTTTCTCTCTTATTATTCCACTAAAACACCGCAAAGGTGCCAAAACCAGCAGAATGGCCACAGCGCAGTCGGTGTTGCTGCTAGCAGTGCATATTCTGCTGATCTCAGAGTTCATCCTGGCCAAGAGGGACTACTACGACATACTGGGGGTGCCTAAAGATGCAACTGAACGCCTGATCAAGAAGGCCTTCCATAAGCTGGCCCTGAAGTACCATCCTGACCGAAACAAGAGCCCAGACGCCGAAGCCAAGTTCAGGGAGATAGCGGAAGCGTATGAGACGTTATCAGATGATAAGAGGAGGCAAGACTACGACCAGTTTGGCCACGGCCCGTCACCAGGGGggagccgaggaggaggaggaggaggaggaggagactaTAACTTTAAGCAGCACTACCAGTCCTTCAACTTTGATGACATTTTCAAAGACTTTGACACTTTTGGTCAGCGACACCAACACCACTTTCACTCCCACTCCCAAAATCAAGCCCACCAAAAGAGACAGTTTGACAGCCACTTTCAGGCCCATCGGGGGGCTATGAACAGACCGAAGAGACCGTTTCAGGAGGGGGGCTTCGGTGGAGGACTCTTTGATGACATGTTTGAGGACTTGGAGAAGATTTTCTCCTTTAACACACACAGTTCCAGGACTGACAGCAGATACCATGGCTCTGGGAAGCAGCAGTGCAGGACAGTGACCGAGCGTAGGGGCAACATGGTGACTACCTTCACAGAATGCTCCTGAGACCAGCAGAAAATGTCGCTCTACCGAGGGCAGCCACTTAGGACATTGTTGGTTTTTTAAATTGTGGTTTTGGAATTTAATGCCAATTTATCCCTTTGGTGGAATAGAGGATGGTTTTCGTGTGGCTTTTGTAATTTTCTGTATGTAAATTCCTCCAGGAACAAATATCCAAGCTGACCTGATGCTCATAGCGCAGTAATTAGCTTTCAAGGTGCATTATGTTTACTTATGATGGTGCAATCTATATAAGACTCAGGTATGGCCTAAGGTTAAAAGATAATTggaatttaaaataatttcctttttaaaggaaagAGGCAATAAGATATATTAAAACACCACAGGAACATTCATTCTGCAGCTATTCAGGCCATAATGTTATCATGAACTCTACAACATAAACCTTTTGCATGTAAAACCAGGCTCATCTAAGCATAGTGTACTCtgaacatgtattttttttcttttggtttttATTAATTATCTTAAAGATtggcaaaaattacagtttcatAAATGTCAATTCATAGCACCTGCATCAAATATTTCTGTGAAAATGAAGCTCCACATCCTGCGATGTTGGCTATTATCAACAGTTACCTCGTTTTAGTTTCTTCCTACAGAGTTGCATCTACCTTCACTAAGTCAGGGTAGGGAATTCAAATTAGTCCCATGACAAATGCTGGTAAACTTAGCCACAGGCAAAGTTTGTGTACTCTCTCAGCTGTTGTTTTGATGAGTCATCTGCCAGTCAAGCTAAACGGACTGAAGCGTTTTTCTGAACTGATCACAATGTGCAATATTTAGCACCTTTGCTCTTCATGTTGCCTCTTTCATAGACAGTGTTGTGTTAATGTCATTGCCTTATGTctgcactttgtgtgtgtgtgtgtgtgcacatgtttgtgtgtgtgtgtgtgtgtttgtgtgtgcgcagagTGGCCTGAATGTTGATTGGTTGCATAATGCTTGGAGAATGAATAAAAAGTTTCAAGAGCAAA

Function

GO: NA

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791849.1 False 1831 mRNA 0.44 3 15770012 15772705
XM_039791850.1 True 1835 mRNA 0.43 3 15770153 15772705

Neighbor

gene id symbol gene type direction distance location
avpr2l LOC103369361,LOC104965399,LOC107098425 coding upstream 5274 15762793 ~ 15764738 (+)
akap14 NA coding upstream 10180 15759311 ~ 15759832 (+)
gxylt1b gxylt1,LOC103355206,LOC103459445 coding upstream 248777 15511849 ~ 15521235 (+)
zcrb1 zcrb1 coding upstream 276589 15491283 ~ 15493423 (+)
pus7l pus7l coding upstream 401893 15360929 ~ 15368119 (+)
LOC120553449 LOC102291490,LOC101477496,LOC100701114,LOC102193524 coding downstream 4210 15776915 ~ 15789611 (+)
tfec tfec coding downstream 51639 15824344 ~ 15852844 (+)
ppp1r3aa NA coding downstream 390690 16163395 ~ 16176161 (+)
LOC120553010 NA coding downstream 440377 16213082 ~ 16213877 (+)
gpr85 gpr85,LOC106576049 coding downstream 443336 16216041 ~ 16220585 (+)
LOC120553205 NA non-coding upstream 47770 15721524 ~ 15722242 (+)
G228136 NA non-coding upstream 70110 15689908 ~ 15699902 (+)
G228130 NA non-coding upstream 88521 15680373 ~ 15681491 (+)
G228128 cntn1 non-coding upstream 89743 15677355 ~ 15680269 (+)
G228119 NA non-coding upstream 238573 15531131 ~ 15531439 (+)
G228164 NA non-coding downstream 20136 15792841 ~ 15794807 (+)
G228171 NA non-coding downstream 132356 15905061 ~ 15905664 (+)
G228172 NA non-coding downstream 243026 16015731 ~ 16078000 (+)
G228236 NA non-coding downstream 493634 16266339 ~ 16266550 (+)
G228246 NA non-coding downstream 549413 16322118 ~ 16324557 (+)
yaf2 yaf2,LOC102236902 other upstream 258834 15494677 ~ 15511178 (+)
prickle1b prickle1 other upstream 298125 15441985 ~ 15471887 (+)
lrrc17 LOC103355197,LOC103382847 other upstream 438834 15300522 ~ 15331178 (+)
LOC120553256 gsap,LOC102790605 other upstream 566971 15168604 ~ 15203041 (+)
LOC120553353 spam1,LOC103370765,LOC102199515,LOC101470336,LOC102310263 other upstream 1307538 14454593 ~ 14462474 (+)
tmem168a LOC103368481 other downstream 494431 16267136 ~ 16280061 (+)
cald1a LOC102212027,LOC102781594,LOC102298269,LOC103382882,LOC106941466,LOC103156466,LOC101472471,LOC106916645,LOC106525550,LOC107395349,LOC103356441 other downstream 998353 16771058 ~ 16831243 (+)
stmp1 NA other downstream 1093605 16866310 ~ 16867796 (+)
morn2 morn2 other downstream 1107571 16880276 ~ 16916928 (+)
G228335 ahcyl2,LOC103371314,LOC107725924,LOC107656398 other downstream 1146958 16919663 ~ 16922823 (+)

Expression


Co-expression Network