LOC120553454 (LOC104933464,LOC108241015,LOC102202158)


Basic Information

Item Value
gene id LOC120553454
gene name LOC104933464,LOC108241015,LOC102202158
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17306223 ~ 17331378 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791853.1
CACTCCGCCGCGACGCGCCACCAACATGCTCACCCGGGTCAAGTCCGCAGTGGCTGGGTTCATGGGCGGTATCATGTCCGGGGGCAACTCCGGCGGAGTGGGCAATAACGCTGGTTCCGAGCTGCCACTGAAATTCCCATATATGAGACCCGAGTTCCTTGGACTGTCCCTGGATGAGATCGAGTGCTCCGCGGACCACGTAGCTCGGCCCATCCTCATCCTGAAGGAAACAAGGAGATTACCGTGGGCCACCGGATACGCTGAGGTGATTAATGCTGGTAAGAGTGCGTTGAATGAGGACCAGGCCTGCTGCGAGGTGGTTGTAGCAAGAAGGAGGCCAATGAGCTACTGCCCTCCCTCCACGCCCAGCAAGACCCCCACAGCCAAGAGACGCAACTCCCTTCCCAATGGAGAGGGCCTGGGCCTCCGTATTGACCACAGCAAGCTGGGAGAGGACAGTGAAGGACTGGTGTTCCACTACTGGGCCTTGTTCGATGGCCACGCCGGCTCAGGTGCAGCAGTTGTCGCCTCCCGCCTACTGCAGCACCACATCGCCTGCCAGCTCCAGGCCGTCATCGAGATCCTACGCAACGTTGCTTCTTTGCCACCGACCGTCCTGGGTGAGGAGCCCGACAACAACCCCTACCTCCAGGGAAACACCCCAGGCCCTCACCGAGCCCTGACCCGGGCCGCTTCTTTGCGCGGGGCCTCAGGTGCACCCGGTTCCCCGAGCAACACCCCGCCTCCGCCACGCTTCTTTACTGAGAAGAAGATCCAACATGAGAGCCTGGTGATAGGAGCCATAGAGAACGCCTTCAAAGAGATGGATGCCCAGATTGAGAAAGAGAAGCAAGTCTATAACATCACAGGAGGGTGTACAGCTCTCACTGTGGTTTACCTGCTAGGAAAACTATACGTTGGGAATGCAGGTGACAGCAGGGCTATCATTATTAGAAACAATGACATCATTCCCATGTCGACAGAGTTCACACCAGAATCAGAACGACAGCGACTCCAGTTCCTGGGTTTCATGCAGCCTCACCTGTTAGGAAATGAGTTCACGCACCTGGAATTTCCCCGGAGAGTTCAGAGGAAGGAGGTGGGCAAGAGGATGCTCTACAGAGATTTCACCATGAATGGATGGGCATACAAGACCATCAACGATGAAGATCTCAAGTTTCCACTGATATATGGGGAAGGGAAAAAGGCACGAGTGTTGGCCACCATCGGGGTGACCCGTGGGCTTGGTGACCATGACCTCAAAGTTCATGACTCCAACATCTACATCAAACCGTTCCTTTCCTGTTGCCCTGAGGTTAAGGTATATAACCTGCAGCAGTATGAGCACGGGGCTGATGATGTTCTGGTAATGGGAACCGACGGTCTCTGGGACGTTCTCTCCAACCAGGAAGTAGCCGAAGCCGTCACCACATTCCTAGCCAACTGTGACCCCGATGACTTACACAGGTATACAATGGCAGCACAAGACCTGGTGATGCGAGCGCGTGGCGTGCTGAGGGACAGAGGCTGGAGGATCACCAATGAGCGGCTGGGCTCCGGAGATGACATCTCGGCCTTCATCATACCGCTGATGTACGGCAACCGTCAGGCCTGAAGAGCCCACAGAGATGTTGCAGTTCAAGGAACCTGGAGGGTCTCGAACCAACAGGATTGATTTGAACTGAGAATCCCCCTTCAGTTTCCTCAGTGCCGTTTgcacatttgttttcttccttagACCAAGGATACACCACTATGTTTGGATATTTGGAGTTGTTGGTGTTTCATATCTCCAAAGGAGTCCAGAATTTGTCGGTCACCCAAGTTGGCAGCTCGGGGGAACAGTACAGTCAGCTCTGCtttgttagtttattttttaaagcctcaaaagtctgaaaaacatgaaaatgtagACACATTGTTATTTGATTAGTTTGTGTCATGAAtcaaaattgtcagaaataattTGGCCTGTTTAAACTTAACTTCTGCAGAGATGTGAAAGCTGAAATAGACGAGTGCTCTTACAAAGCAGAGAAAATACCTCTTTTCTTTCGTACCTCTCTTGCAGTGCTGTACATGGCCCATCTTCTTCACTATCTTTTAGTCCTCCCCTCTTTTCCTATAATGTACAGTCAaattgtttataaaaaaaaaaaaacctctgttTTGTGACCATGGACCAAGCTGACTGGTCAGCTGCGTTTTCTGTTTCGCCACAGTGTGGCTTTGAAGGATTCACTTGCTGAAGAACTGCTTCCAGATGCTTTTCAGATCACAGACTGATTGCAGCGATGAGATTTTGGCTCGAACCCACGTTGCTGTTCCCATTCTGagcatcttgttgtcatttcGAAGGCTTTCAGTTGGTAACAGCCCTGGAAATCTTTTGTCACATGGAAATTTGGGAGAGGGTTTCACCGTTTCACATGCATTCAGTTATGTTATTAAGAATGTGAATGAAGAAGAAAAGATACAAGGACCTGAAGTTGACCATCTCACAGTAGCAAGGCAAATGAGCAATCAGTTTTACTGTAGAGTGAAAGCTCTTCAGCCTGTATGGATCAACAGTGGGGACATAGTttgatctggtttattatgaaCAAAGTTTAATATGAAAATTGGCATTATTTTACATCTGCAGAGAAAAAAATGTTACAAGTCATTAAGTCATTTAATCTGATATGGAGtcttcacatttaaaaataaattactttgtgtttagttgcAGTTAGTTGGTAATTAGTCTAGCATTGCCAGAcgttcctccacagtgctgcgggggagggtctggcgagtccacacagaatacagaaaaacgtgctctggttaattggcatttctttaaaccaatcacaatcgtcttgggtggcactAAGAGCCGTACAGAGcagcggtgcctctgcaaaatagcctcgggaaggaacttgttttggtggatgtgtacgttcaaaaggttgaaaactcagattggacagatagtctagctagctgtctgga

Function

NR:

description
PREDICTED: protein phosphatase 1H

GO: NA

KEGG:

id description
K17503 PPM1H, ARHCL1; protein phosphatase 1H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791853.1 True 3000 mRNA 0.49 10 17306223 17331378

Neighbor

gene id symbol gene type direction distance location
trim24 LOC103366983 coding downstream 71530 17222334 ~ 17234693 (-)
LOC120553673 NA coding downstream 85866 17208626 ~ 17220357 (-)
atxn10 atxn10 coding downstream 98769 17196941 ~ 17207454 (-)
pparaa ppara coding downstream 171093 17116753 ~ 17135130 (-)
cdpf1 cdpf1 coding downstream 189770 17114008 ~ 17116453 (-)
creld2 creld2 coding upstream 234193 17565571 ~ 17570648 (-)
zbed4 zbed4,LOC102794369 coding upstream 244760 17576138 ~ 17583883 (-)
tbc1d22a tbc1d22a,LOC106927306,LOC103356476 coding upstream 802706 18134084 ~ 18270751 (-)
celsr1a NA coding upstream 1097729 18429107 ~ 18523877 (-)
trmu trmu,LOC102792203 coding upstream 1193558 18524936 ~ 18530092 (-)
G228474 NA non-coding downstream 30746 17272948 ~ 17275477 (-)
G228439 kdm5a non-coding downstream 62243 17243465 ~ 17243980 (-)
G228423 NA non-coding downstream 83995 17221205 ~ 17222228 (-)
G228401 NA non-coding downstream 167948 17137270 ~ 17138275 (-)
G228363 NA non-coding downstream 299223 16952943 ~ 17007000 (-)
LOC120552976 NA non-coding upstream 70870 17402248 ~ 17402832 (-)
G228522 NA non-coding upstream 186285 17517663 ~ 17600185 (-)
LOC120553191 NA non-coding upstream 973207 18304585 ~ 18346997 (-)
G228684 NA non-coding upstream 1224675 18556053 ~ 18558509 (-)
G228683 NA non-coding upstream 1227223 18558601 ~ 18559279 (-)
G228465 NA other downstream 4025 17295122 ~ 17302198 (-)
slc37a3 slc37a3 other downstream 285488 17007724 ~ 17020735 (-)
G228291 LOC103356441,LOC102298269,LOC102212027 other downstream 482791 16748842 ~ 16823432 (-)
G228191 NA other downstream 1514370 15771238 ~ 15791853 (-)
znf800b znf800,LOC103364713,LOC103355189,LOC108412280 other downstream 2216240 15055475 ~ 15089983 (-)
tafa5a fam19a5,LOC103356475,LOC102793695 other upstream 499238 17830616 ~ 18100995 (-)
gramd4a gramd4,LOC103376144 other upstream 1031881 18363259 ~ 18421407 (-)
LOC120553633 slc2a13,LOC103369283 other upstream 1407018 18738396 ~ 18823090 (-)
sox5 sox5 other upstream 1697231 19028609 ~ 19270336 (-)
G228934 fam19a2,LOC103364248 other upstream 2401724 19733102 ~ 19807098 (-)

Expression


Co-expression Network