LOC120553458 (cpne8,LOC104935575,LOC103365370,LOC101074159)


Basic Information

Item Value
gene id LOC120553458
gene name cpne8,LOC104935575,LOC103365370,LOC101074159
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 18561096 ~ 18652690 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791861.1
tcttactGGCACCTTTGCTCCACTTCTCGCCGAGGAGGCGCACACTCACTTTATCTCGCTATCCTCCTTCGCAGCTCACAAAAAGGGGCCGGGTCACACGCAGAAGGGGGAAGAGGAAaggcaaaacattttttgacagGATGAACAACACTTTCCTAAACATGGCGTCGATAGGCGACTTCGACCCGCTCAACGCGTCTATTCCTGCCACCAAAGTTGAAATCACAGTGTCCTGCAGAAACCTGCTGGACAGGGACACCTTCTCCAAATCAGACCCAATTTGTGTTCTCTACACACAAGGCATGGGCAACAAGGAGTGGAGAGAGTTTGGGAGAACAGAGGTGATAGACAACACGCTAAACCCAGACTTTGTGCGGAAATTCATTTTGGACTACTTCTTTGAAGAGCGACAGAACCTCCGATTTGACTTGTATGATGTTGACTCGAAGAGCGCCAACCTGTCAAAACATGATTTTCTGGGCCAGGCCTACTGTACTCTCGGAGAGGTGGTTGGATCATTGGGCAGTCGCTCGGAAAAAGCTCTTGGAGGCATCCAAGGCAAGAATTGCGGGACCATTATTGTGAAAGCTGAGGAGCTGAACAACTGCAGGGAATCGGTAATGATGCAGTTCTGCGGGAACAAGTTGGACAAAAAGGATTTCTTCGGCAAGTCCGATCCCTTCCTGGTCTTCTACAGGAGCAATGAGGATGGCACGTTTACCATCTGCCACAAGACAGAGGTGGTGAAGAATACATTGAACCCAGTGTGGCAGGCCTTTAAGATCTCTGTTCGAGCTCTTTGCAACGGTGATTACGACAGAACAATCAAGGTTGAGGTGTACGACTGGGACAGAGATGGCAGTCATGACTTTATCGGAGAATTCAGCACCAGCTACAGAGAACTATCCAGAGGGCAGAGCCAGTTCAATGTCTATgagGTGATAAATCCAAAGAAGAAAGGGAGGAAGAAAAAATACCTCAACTCTGGAACGGTAACGCTGCTGTCATTCCTGGTGGACATCGACGTCACCTTCCTGGACTACATCAAAGGAGGGACCCAGATTAACTTCACCGTGGCCATTGATTTCACAGCTTCCAATGGTAACCCAGCCCAGCCCACCTCTCTCCACTACATGAGTCCCTACCAGCTGAATGCTTACGCAATGGCCCTGAAGGCAGTAGGAGAAATCATCCAGGACTATGACAGCGATAAGATGTTTCCCGCACTGGGGTTCGGAGCCAAGCTGCCACCTGACGGACGGATCTCCCACGAGTTTGCCTTGAATGGAAACCCTCAGAACCCCTACTGTACAGGTATCGACGGTGTGATGGAAGCCTACTACCAGAGTCTGAAGTCGGTTCAGCTCTACGGACCCACCAACTTCTCCCCTGTCATCAACCATGTggccaggtATGCAGCTTCGGTGAAGGATGGCTCCCAGTACTTTGTGCTCCTCATCATCACAGATGGCGTCATCTCAGACATGGCCCAGACAAAGGAGTCTATTGTCAACgCCGCCTGTCTGCCAATGTCAATCATCATCGTGGGGGTGGGTCCCGCAGAATTTGATGCCATGGTTGAGTTGGATGGCGATGAAATCAGAATCTCATCCAGAGGAAGATATGCTGAGAGGGACATTGTCCAGTTCGTCCCATTCAGGGACTACATCGACCGGACGGGGAACCACATCCTGAGCATGGCGCGGCTCGCCAAAGACGTCTTGGCCGAGATCCCTGACCAGTTCCTCTCCTACATGAGGACCCGCGGGATCAAGCCTTCGCCAGCGCCGCCTCCCTACACGCCGCCTCCTTACACGCCACCAGGGCAACCCATCCAAACCCAGATATGAGGAGCCAGAGGGAGAAAGGTTTCAGAGTCAGGGGTTAAGCTGAACTTTACGCGCAAAATACTTCCACATCCCTGAAGCCCGCTCTCCATGCCTTGTCGTCGTGGATCACGGTGGTCTTTCTCGTGTGTTCAGAAGGCTGCATGTCGAGCCAGGAGAGTGTCGCTTTTGAGGACAGGAAAAGCCAATGAGAGTCTGTTTACTTCCACTGTCAAGCATTCCTGTTACTGTCtggaattatttattttttcgcCTGGGGAAACCTGGAAAGGCCTCGGAGAGAGTACGGAAAGTCTGAATTCCTAGCAGGGAGGaaatgaaggaatgaaagaggaaaTGGACAGCTTTGGAAACATTGATAAGAGAATGTGTTCAGACAAAACAAAGGAATCACTTGATTTTAAATGAACTTTTTCTGTAAATAACCGGACATATGTaacttcttctttctctttctctctttctctctccaactCACtcattgtttacagtaaatgctAACAAAGATTTTTACTGTTGATACTTTTATATACACATAGTTTCATCAATATGAAGCGACCTCTcgcgcgctctctctctctctctctctctctctctctctctctctcactc

Function

symbol description
cpne8 Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. Orthologous to human CPNE8 (copine 8).

NR:

description
PREDICTED: copine-8 isoform X1

GO: NA

KEGG:

id description
K24523 CPNE5_8_9; copine 5/8/9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791861.1 True 2459 mRNA 0.49 20 18561096 18652690

Neighbor

gene id symbol gene type direction distance location
tprkb tprkb coding downstream 25454 18533638 ~ 18535642 (-)
trmu trmu,LOC102792203 coding downstream 31004 18524936 ~ 18530092 (-)
celsr1a NA coding downstream 37219 18429107 ~ 18523877 (-)
tbc1d22a tbc1d22a,LOC106927306,LOC103356476 coding downstream 290345 18134084 ~ 18270751 (-)
zbed4 zbed4,LOC102794369 coding downstream 977213 17576138 ~ 17583883 (-)
LOC120553351 NA coding upstream 14431 18667121 ~ 18705237 (-)
LOC120553632 abcd2 coding upstream 58324 18711014 ~ 18731666 (-)
bcat1 NA coding upstream 645232 19297922 ~ 19309684 (-)
dnai7 NA coding upstream 693628 19346318 ~ 19353491 (-)
slc5a8 slc5a8 coding upstream 703182 19355872 ~ 19362110 (-)
G228683 NA non-coding downstream 1817 18558601 ~ 18559279 (-)
G228684 NA non-coding downstream 2587 18556053 ~ 18558509 (-)
LOC120553191 NA non-coding downstream 214099 18304585 ~ 18346997 (-)
G228522 NA non-coding downstream 960911 17517663 ~ 17600185 (-)
LOC120552976 NA non-coding downstream 1158264 17402248 ~ 17402832 (-)
G228713 NA non-coding upstream 228471 18881161 ~ 18884075 (-)
G228731 NA non-coding upstream 240950 18893640 ~ 18975820 (-)
G228759 NA non-coding upstream 361965 19014655 ~ 19022242 (-)
G228824 NA non-coding upstream 673931 19326621 ~ 19328343 (-)
G228826 NA non-coding upstream 679951 19332641 ~ 19336028 (-)
gramd4a gramd4,LOC103376144 other downstream 139689 18363259 ~ 18421407 (-)
tafa5a fam19a5,LOC103356475,LOC102793695 other downstream 460101 17830616 ~ 18100995 (-)
G228465 NA other downstream 1258898 17295122 ~ 17302198 (-)
slc37a3 slc37a3 other downstream 1540361 17007724 ~ 17020735 (-)
G228291 LOC103356441,LOC102298269,LOC102212027 other downstream 1737664 16748842 ~ 16823432 (-)
LOC120553633 slc2a13,LOC103369283 other upstream 85706 18738396 ~ 18823090 (-)
sox5 sox5 other upstream 375919 19028609 ~ 19270336 (-)
G228934 fam19a2,LOC103364248 other upstream 1080412 19733102 ~ 19807098 (-)
etv6 etv6 other upstream 1154124 19806814 ~ 19839350 (-)
rerg rerg other upstream 1414205 20066895 ~ 20122393 (-)

Expression


Co-expression Network