LOC120553463 (LOC103356656)


Basic Information

Item Value
gene id LOC120553463
gene name LOC103356656
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7869761 ~ 7887525 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791873.1
GCTGGACCAATCACAAAGCTTATACCTTTGTGTGCGTCATCGTGTGGGCGGAAACACGGTTGTGGGTGAAACGGCGACGAGGTTGAGCGGTTGTTCGTAGACGTGGAGGAAAATTGACTTAAAAACATCCGATCCACAGTGCAGAAGACGGCTCACACGGAACAGAAACGGATTTTTAACAGCTATGTGTTTGTTCAGTTTGCATTAGGGCGACGATTTTGACATTATCGCAGAAACGGTTTTTACATAACCAGCTTTACCCGGTAACGTGTATTCACGGTGGGGAGCAGTCGGATCTCGCAACGGTATCTTCTGCTCGTTTTCAGCAACAACTGCCTTCAAATACAGGCTAGTTAATTACTCTGTTACTTAAGTATACGTAGATACTGTTTCTAGAGTGCAGGCCTGCGAAAGCTTTTAAGTACACATATAATACaagctatttttattattcGGAAAAAATAAGTTATACAACACAAAACGAGGTTACTGCACGTCAGCGAACCGGGTCCTAAAGCCCGCCGGGTTGCTTGTCACATTGCCGGTCTCGTGCCCAAATGGTTCATCGGCCAACGGTTTTTAAATTCTTCGACATAATGGAAAAGGTTCTGTTAGAGCAAGGTTAATTGCAAACTTGGGACTGCATCATTGAAAACGACGAGTTGTATGCTAAAATAGCATACAAGCTAAAATAGCGCACAAGCTAATATAGCACACGCACTTAAGACATTTGGATTCCCAGTGACCtggtttcttctttctttcctggaTACTATTTTAACAGCGAGTCTGAATAAGAGTGGAGTGAGCACAAAAAGGACTgttcttgaaatacaaaaaggGGGACAAAAAAAGGACTCGTCCAGTTGAGTAATGGTCATTAATACGATCCACTGGTTCAGGAAGGGCTTGCGGCTCCACGACAACCCGGCGCTTAAGGAATCTCTGCTGGGAGCGGATACTGTCCGCTGCGTCTACATCCTCGACCCCTGGTTCGCGGGATCTTCCAACGTCGGGATCAACAGGTGGAGGTTCTTACTTCAGAGTCTTGAGGACTTGGACTACAGCCTCCGTAAACTCAACTCTCGACTGTTTGTGATACGGGGCCAACCCACTGATGTCTTTCCCAGACTGTTCAAGGAGTGGAATATTTCTCGTTTGTCTTACGAGTACGACTCTGAGCCCTTTGGGAAAGAACGAGATGCAGCTATTAAGAAACTGGCCTGTGAGGCTGGAGTGGAGGTGACGGTTCGCATCTCCCACACACTCTATGACCTGGACAAGATCATAGAGTTAAATGGGGGTCAGTCCCCTCTTACCTACAAGCGGTTCCAGACCCTCATCAGTCGTATGGATGCAGTGGAGGTGCCTGCGGAGTCCATCACGGCTGACATCATGGGGAAATGCAGTACGCCACTGTCCGAAGACCATGATGACAAGTTTGGCGTCCCCTCCTTGGAGGAGCTGGGTTTTGATACTGAAGGTCTGTCCACAGCTGTGTGGCCGGGGGGAGAGACCGAAGCCCTCACGCGACTTGAGAGGCATTTGGAGAGGAAGGCATGGGTGGCCAACTTTGAGCGTCCCAGAATGAACGCCAACTCGCTGCTCGCCAGCCCGACAGGCCTCAGCCCGTACCTGCGCTTCGGCTGCCTCTCCTGTCGCCTCTTCTACTTCAAACTCACCGACCTCTACAGGAAGGTGAAGAAGAACAGCTCCCCTCCCCTCTCGCTCTACGGTCAGCTGCTGTGGCGCGAGTTCTTCTACACGGCTGCCACCAACAACCCCTGCTTCGACAAGATGGAGAGTAACCCCATCTGCGTTCAGATCCCGTGGGACCGCAACCCTGAGGCGCTGGCCAAGTGGGCGGAGGGCCGCACCGGCTTCCCCTGGATCGACGCCATCATGACGCAGCTGAGGCAGGAGGGCTGGATCCACCACCTGGCTCGGCACGCCGTGGCCTGTTTCCTGACCCGAGGAGACCTGTGGATCGGCTGGGAGGAGGGCATGAAGGTGTTTGAGGAGCTGCTGCTGGATGCAGACTGGAGTGTGAATGCAGGCAGCTGGATGTGGCTCTCCTGCAGCTCTTTCTTCCAGCAGTTCTTCCACTGCTACTGCCCTGTGGGTTTCGGCCGACGCACAGACCCCAATGGAGATTACATACGGCGCTACCTGCCCATTCTGAGAGGGTTTCCAGCCAAATATATTTATGATCCCTGGAACGCTCCAGAGATCGTGCAGAAGGCAGCCAAATGTGTTATTGGAGTGCATTACCCCAAGCCCATGGTGAACCATGCAGAGGCCAGCTGTCTCAACATTGAACGAATGAAACAGATCTACCAGCAGCTCTCCTGTTATAGAGGCCTCGGCCTTCTGGCTACAGTTCCGTCCACCTCTAACGGTAACGGTAACGGAGAGATGTCCTCAGACGGGATGGGATTGTCTGTCGAGGCTACACACAATGCTGCAGGTCCATCTCgcTACCAGATGCCGGTTCACTCCCAAAGAGAGTGGCAAAGCGGCGTCATGATGTACCGGCAGAATGATCCACAAACGAGCTTCGGCACACACCAGCAGGGTTACGCAGGCGCCAGTATGAAGTGTTACGCCCAAGGCGCACAGCAGATTCCTGCAATTCAGAAAGGACGTGAACTCCACTGCACCACTCAGACCGTTGTCAAACGGCACAGCGAGGACTCTGGGAATGGCAAAGGCTCTAAAGTCCAGAGACAGAGTATTCACTAGAAAGGAGTGTCTGCAGACAGACCGTGTACACAGCCAACACAAAGGCTAAGAATCTGTTTTTACTAAGTctcttgtataaaaaaaaaaaaaccacactcACAAAAGACTATTATCATGTGGACTGCACGACCCGGCCAGTGGACCGACATCCCTGGAGCGGCTGTTACCGCTGTGCTAAATTTTGCCAGGACAAAAGTTCTTGTGTATATAATGAATTTGCTGATGTCACATACAACTTGtacatatttgaatatattgtatgtgtctctctttgtgtagCCATAGACCCATCGATATATTTTTGATATGAAAAATCATTGTGGATGGATCttgaatttctttcttttttttttctttttttacactttcaataaaaatgaaaacatttgtaGACCGTCCATTCAAAAACAAATGGTGATAAATCTTGTATCTGTTCTAATGCGGCTGTCTGTCCTCTCATTTACTCTGCTTCCcatttttctcctttttgaGCCGTTCCAAAATATCAACTGTTTGAATCGTTCCCTTTCTCCACCTCAGTACTAGTGGACTCATGTTAATCCTCACCACTGTAGCAATATCAGTAGGACGTAAACTATCAAGTTGTTGCACTTGTTGAGGGTAACCGAGAAAAGGCGTCAGGAAGACAGATTCTACATATCATGGTGTCCCCCCCCCCGTTAAATGTGTCACATGAGAGAACTGCTTCACTTGTTCCTTCTCAGTGTGCTTGTTTCATTAAAACTGGATATAATATA

Function

NR:

description
PREDICTED: cryptochrome-1-like

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0003913 DNA photolyase activity molecular_function

KEGG:

id description
K02295 CRY; cryptochrome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791873.1 True 3500 mRNA 0.49 14 7869761 7887525

Neighbor

gene id symbol gene type direction distance location
LOC120553589 parpbp,LOC102779589 coding upstream 263923 7592879 ~ 7605838 (+)
LOC120553155 pah coding upstream 307556 7546428 ~ 7562205 (+)
pah pah coding upstream 345342 7509964 ~ 7524419 (+)
metap2a metap2,LOC104945620,LOC102784010,LOC102294382 coding upstream 602311 7257270 ~ 7267450 (+)
vezt vezt coding upstream 613876 7240852 ~ 7255885 (+)
tnnt2c LOC102777397 coding downstream 8020 7895545 ~ 7897483 (+)
ppfibp1a LOC103362093,LOC102299773,LOC102192229 coding downstream 90552 7978077 ~ 8012811 (+)
myf6 myf6 coding downstream 574799 8462324 ~ 8464094 (+)
myf5 myf5 coding downstream 581136 8468661 ~ 8471034 (+)
acss3 acss3 coding downstream 628063 8515588 ~ 8565355 (+)
G226452 igf1 non-coding upstream 162191 7616188 ~ 7707570 (+)
G226352 NA non-coding upstream 523599 7335054 ~ 7346162 (+)
G226319 usp44 non-coding upstream 597445 7272077 ~ 7272316 (+)
G226318 NA non-coding upstream 598054 7271317 ~ 7271707 (+)
G226317 NA non-coding upstream 599008 7269104 ~ 7270753 (+)
LOC120553625 NA non-coding downstream 3884 7891409 ~ 7955485 (+)
G226505 NA non-coding downstream 136836 8024361 ~ 8028661 (+)
G226507 syt1,LOC106518246,LOC100695586 non-coding downstream 160254 8047779 ~ 8057617 (+)
G226515 NA non-coding downstream 372808 8260333 ~ 8306828 (+)
G226554 NA non-coding downstream 454105 8341630 ~ 8408659 (+)
LOC120553156 LOC104945813 other upstream 300458 7566655 ~ 7569303 (+)
LOC120553154 LOC104945813,LOC103356648 other upstream 337684 7525892 ~ 7532077 (+)
ascl1a ascl1 other upstream 443507 7423618 ~ 7426254 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other upstream 469362 7370442 ~ 7400399 (+)
klhl42 klhl42 other upstream 501545 7363325 ~ 7368216 (+)
rps16 rps16,LOC103382554 other downstream 539110 8426635 ~ 8432697 (+)
lhfpl3 lhfpl3,LOC101483460 other downstream 1247069 9134594 ~ 9173220 (+)
ndufb2 ndufb2,LOC102790702 other downstream 1349701 9237226 ~ 9241349 (+)
G227121 kera other downstream 2809729 10697254 ~ 10699718 (+)
G227141 dcn,LOC103382665 other downstream 2844544 10732069 ~ 10737503 (+)

Expression


Co-expression Network