LOC120553464 (LOC107381693,LOC105020203)


Basic Information

Item Value
gene id LOC120553464
gene name LOC107381693,LOC105020203
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24320276 ~ 24365349 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791874.1
GCCTAAGCACCTGTGAAGTCCTTTGCAGATCTCTCTGCACGATGCGCTGCGTGTCTCTCTATGTCCGGGGCGAGTGGTTCAGGGTGCCCCGTGGCGGCCCCTCGGCCTCTGTCCGTTCGCTGGGGTCCGAGGCCCTGCGGCGCTACCGTCAGGCCAAGAAGCTAGAGGACGGAGACGGGGAGAGGGAGTTCAGCATGCGGCGGTGTCAGGGTGGAGAGCTCCTTCACCCCGAGGACAGGGCAGAGGACGTTCTGGAGGACGAAGACTTTGTGCAGATGGtCTTTGCAGGAGAAAATCCCATGGCAATGGCGCCGCAAACCTCTTACCAAGAGCCCAAAGAGTACATTTCCCTGGATGGCGAAACTCTGACCACAGCCGCTCTGGTCAGCTTGGGTCAAGGCTTGTTCAAAATAAAGCTAACCCCTGAAGCTGAGGAGAAAGTCAGAAAATGCCGAGAGGTTATTGACGCTTTTATAAGAGAAGACAGAGTCGTGTACGGAGTCAACACTGGTTTTGGAATGTTTGCACGCACACTCATACCCAAGGAACAACTGGTGCAACTGCAGGCAAATGTGATTCGCTCTCATTGCGCTGgaGTGGGTGCCCCATTGAGTGTAGAGAGGACACGCATGCTGCTGGCTCTGAGGATCAATGTCCTTGCGAAAGGTTACAGCGGCGTCTCTATGGAAACCCTTGACGCTATGCTCAAGGCCTTCAATGcaTCCTGTTTGTCCTGGGTACCTGAAAAGGGTACCGTGGGAGCGAGTGGAGACTTGGCGCCCCTGGCCCACCTCACCCTGGGCTTGATGGGAGAGGGCCGGATGTGGTCACCACAGAGCGGCTGGGCTGATGCCAAGGCTGTGTTGGAAGGCCATGGGCTCCAACCTCTCATGCTGAAACCAAAGGAGGGAATCGCTCTGATCAATGGGACTCAGCTGATGTCATCTCTGGGTGCGGAGGCTGTGGAGAGAGCTCTGGGCGTGGCCAGACAAGCTGACATCATTGCTGCCTTGAGTTTTGAAGCCCTGAAAGGCACCACAAAAGCCTTCCACAGCGCCATCCATGCAGTGAGACCTCACCCCGGTCAGATGGAGGTGGCTGCGAGGCTTCGCTCTCTGCTGGACTCAGACGTCTTCCCTTCTCAGATCTCAGAGAGTCATAGATCATGCGATCGTGTTCAGGATGCCTACACCCTGCGCTGTATCCcacagGTTCATGGAGTGGTTCATGACACAGTCGCTTTTGTCCAGAAGGTGATTTCCACTGAGCTGAACAGTGCTACGGACAACCCACTGGTATTTGCAGAAACCGGGGAGATCATGTCTGGTGGGAATTTCCATGGAGAATATCCAGCCAAGGCCCTGGACTACCTGGCCATAGGTGTGCACGAGCTGGCCGGTATCAGTGAGAGGAGGATTGAGAGGCTGGTGAACCCGGCCCTCAGCGAACTGCCGGCCTTCCTCGTCCGGGACGGAGGGCTCAACTCTGGCTTCATGATCGCACACTGCACTGCTGCTGCCTTAGTGTCAGAGAGCAAGGCTCTGTGCCACCCGTCCTCCGTTGACTCCCTGTCCACCAGCGCAGCAACAGAGGACCATGTGTCTATGGGCGGCTGGGCCGCTCGCAAAGCCCTGAGGGTGGTGGAGCATGTGGAGCAAGtgcTGGCCATAGAGCTGCTGGCTGCCTGCCAGGCTCTGGAGTTCCTGCGTCCCCTGAAGACCACCACTCCTCTGGAGAAGGTCCGCGAGCTGCTGCGCTCCGTGGTCAGTCCTTGGGACAAAGACCGCGTCATGAGTCCCGACATCGAAGCTGCTCACGCACTCGTCAGACAGCAAAAGGTCTGGAGGACAGTTCAACCGTACATGGACGAATACAAGAACAAGCTGAAGATATGATCATGTAACGATGCTAcactgtgtgatgtgcttcatgTGTGAAAATAAAAGACGGGGAGACATTTTAAACATCA

Function

NR:

description
PREDICTED: histidine ammonia-lyase-like isoform X1

GO:

id name namespace
GO:0019556 histidine catabolic process to glutamate and formamide biological_process
GO:0019557 histidine catabolic process to glutamate and formate biological_process
GO:0009058 biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004397 histidine ammonia-lyase activity molecular_function

KEGG:

id description
K01745 hutH, HAL; histidine ammonia-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791874.1 True 1969 mRNA 0.56 20 24320276 24365349

Neighbor

gene id symbol gene type direction distance location
ift46 LOC107372934 coding upstream 11832 24301765 ~ 24308444 (+)
mkln1 mkln1 coding upstream 70769 24209619 ~ 24249507 (+)
asb13a.1 LOC103363234,LOC100709988,LOC105929846,LOC101482319,LOC102215476,LOC108241840 coding upstream 386400 23924156 ~ 23933876 (+)
gdi2 gdi2,LOC104923747 coding upstream 406463 23899241 ~ 23913813 (+)
ankrd16 ankrd16,LOC102787719 coding upstream 422378 23886747 ~ 23897898 (+)
chst11 chst11 coding downstream 19549 24384898 ~ 24478763 (+)
nopchap1 LOC104942935 coding downstream 200892 24566241 ~ 24571321 (+)
LOC120553040 NA coding downstream 232001 24597350 ~ 24604947 (+)
LOC120553385 NA coding downstream 255516 24620865 ~ 24635265 (+)
LOC120553387 NA coding downstream 366847 24732196 ~ 24749828 (+)
G230011 NA non-coding upstream 56211 24260059 ~ 24264065 (+)
G229994 NA non-coding upstream 204155 24112965 ~ 24116121 (+)
LOC120553514 NA non-coding upstream 225111 24088025 ~ 24095165 (+)
G229976 net1 non-coding upstream 253287 24065214 ~ 24066989 (+)
G229974 NA non-coding upstream 325441 23994566 ~ 23994835 (+)
G230109 NA non-coding downstream 116961 24482310 ~ 24485517 (+)
G230192 NA non-coding downstream 430604 24795953 ~ 24798741 (+)
G230249 NA non-coding downstream 819463 25184812 ~ 25191943 (+)
G230260 NA non-coding downstream 986528 25351877 ~ 25352174 (+)
G230259 NA non-coding downstream 1010998 25376347 ~ 25377601 (+)
LOC120553083 NA other upstream 5569 24309542 ~ 24314707 (+)
LOC120553686 LOC105929833,LOC107382334 other upstream 374636 23934300 ~ 23945640 (+)
adm2a NA other upstream 471652 23833018 ~ 23848624 (+)
kcnc2 kcnc2,LOC100689973,LOC101475944 other upstream 879613 23315421 ~ 23440663 (+)
phlda1 phlda1 other upstream 1577097 22739717 ~ 22743179 (+)
G230148 LOC102781993,LOC101465723 other downstream 255463 24620812 ~ 24778258 (+)
LOC120553523 NA other downstream 997533 25362882 ~ 25373996 (+)
msrb3 msrb3 other downstream 1276491 25641840 ~ 25662819 (+)
LOC120553706 NA other downstream 1445058 25810407 ~ 25812828 (+)
arhgef39 arhgef39 other downstream 1672839 26038188 ~ 26106823 (+)

Expression


Co-expression Network