LOC120553465 (nfyb)


Basic Information

Item Value
gene id LOC120553465
gene name nfyb
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24365338 ~ 24375224 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791875.1
GGCCCTCTATCGGCAAGCGCCGGTGATGCAGCCGCGGCTACGCGCTGGGACTGGTCCTTTCGCAGCCATTTTCTGTCCAACCAAACAGCCGTCTCAGGAAGGTAACCAACCAGGGCTTCATTGCAGATGGACGGAGACAGCTCGACCACGGACGCCTCCCAGCTGGGCATCGCTGGAGAGTACATGGCATCCGGTCATTACGTTCTCCAGTCTCAAGATGATGACGGCGAGGAGAATCTGAATGACCACGATGACAGCGGTATCAAAGAGAACTTCAGGGAGCAGGACATCTATCTTCCTATCGCCAACGTGGCTCGCATCATGAAGAACGCCGTTCCTCAGACTGGAAAGATCGCGAAAGACGCCAAGGAGTGCGTGCAGGAGTGCGTGAGCGAGTTCATCAGCTTCATCACGTCGGAGGCGAGCGAGCGCTGCCACCAGGAGAAGAGGAAGACCATCAACGGGGAGGACATCCTGTTCGCCATGTCCACGCTGGGCTTCGACATGTACGTGGAGCCGCTGAAGCTCTACCTGCAGAAGTTCCGAGAGCAGCCTAGCTGGCAACAGACAGAGCATCAAGCAGCTGGGTTTCCAGATGGGTTGGGAACTTCAGCGACAAACTGGgccaTGAAGGGCGAGAAGGGGATCCCCGGGGTGTCGGTGGGAGAAGGCCTGGGAGATGAACTCACGGACGACAGCTTCACAAACCCACTGCCAGCTGGGATTATCACAGCAGACGGTCAGCAGCAGAACGTCATGGTGTACACCACCTCATATCAACAGATCCCCACCGTGCAGCAGATCCAGTTTTCATGACGAGACCTGAACACGGCGGCTCCTTTCACCAGGCACCGATCGGCGGGttgaccccctcccccccagggTAGAGGTTAtcagacagggagggagggagagggaggagtcTGCAGAAACCCCCTCATGTACAGAGCAATCACTACCTGTTGAGTAGAAAGTCTAGTTCCTAGTTGTGAGGTACCAAATGTTTTGGGAGTGCAGTCCAAAGCAGTTGGCAAAATTGAGGCTTTATTTTAAAGGCTAGTCTTTATGACATGATTTAGTGGTCggaatatgttttgtgtgtgttcatgtgttttgCTTTTATGCATTTAATTGATTTGCGGCgaagggtgggggtgggtggggggggaatAATGGGAAGTGTTGGATGTTTATTTTTGAACACCTCTGTGTTAACTGAGAGAAGGCACGTTGTTACTGCCACATCAGATCATGCAGCTCTTTTGTAAGTTGACACAATTTACCATGTGCTTTAATGTTATGTAAATCCTTTGAATAAAAATTCAAAAGTGATGTTTAAAA
>XM_039791876.1
TTAGCTCGAATGGAAATGTCCGTCTCtgtctgatttttttatttgttgtctgAGTGAATGAGGGCTGCTCATCAGGAAGTATCCAGCGGGCCAAACTTTATAAACGATTATTTAACATTTCGGCCCCGGCCACGTCTTGCTCCGCTCGGTATGACAAAGAACAGGCCTGTCTCTGCAGGCGCGAATTGCAGTGGACTTCCAATGAACATGTTTTCAAGGGACGCTATGTACCTGAATAGGTTAACGTTAACTACAGAAGATGGACGGAGACAGCTCGACCACGGACGCCTCCCAGCTGGGCATCGCTGGAGAGTACATGGCATCCGGTCATTACGTTCTCCAGTCTCAAGATGATGACGGCGAGGAGAATCTGAATGACCACGATGACAGCGGTATCAAAGAGAACTTCAGGGAGCAGGACATCTATCTTCCTATCGCCAACGTGGCTCGCATCATGAAGAACGCCGTTCCTCAGACTGGAAAGATCGCGAAAGACGCCAAGGAGTGCGTGCAGGAGTGCGTGAGCGAGTTCATCAGCTTCATCACGTCGGAGGCGAGCGAGCGCTGCCACCAGGAGAAGAGGAAGACCATCAACGGGGAGGACATCCTGTTCGCCATGTCCACGCTGGGCTTCGACATGTACGTGGAGCCGCTGAAGCTCTACCTGCAGAAGTTCCGAGAGCAGCCTAGCTGGCAACAGACAGAGCATCAAGCAGCTGGGTTTCCAGATGGGTTGGGAACTTCAGCGACAAACTGGgccaTGAAGGGCGAGAAGGGGATCCCCGGGGTGTCGGTGGGAGAAGGCCTGGGAGATGAACTCACGGACGACAGCTTCACAAACCCACTGCCAGCTGGGATTATCACAGCAGACGGTCAGCAGCAGAACGTCATGGTGTACACCACCTCATATCAACAGATCCCCACCGTGCAGCAGATCCAGTTTTCATGACGAGACCTGAACACGGCGGCTCCTTTCACCAGGCACCGATCGGCGGGttgaccccctcccccccagggTAGAGGTTAtcagacagggagggagggagagggaggagtcTGCAGAAACCCCCTCATGTACAGAGCAATCACTACCTGTTGAGTAGAAAGTCTAGTTCCTAGTTGTGAGGTACCAAATGTTTTGGGAGTGCAGTCCAAAGCAGTTGGCAAAATTGAGGCTTTATTTTAAAGGCTAGTCTTTATGACATGATTTAGTGGTCggaatatgttttgtgtgtgttcatgtgttttgCTTTTATGCATTTAATTGATTTGCGGCgaagggtgggggtgggtggggggggaatAATGGGAAGTGTTGGATGTTTATTTTTGAACACCTCTGTGTTAACTGAGAGAAGGCACGTTGTTACTGCCACATCAGATCATGCAGCTCTTTTGTAAGTTGACACAATTTACCATGTGCTTTAATGTTATGTAAATCCTTTGAATAAAAATTCAAAAGTGATGTTTAAAA
>XM_039791877.1
GGCCCTCTATCGGCAAGCGCCGGTGATGCAGCCGCGGCTACGCGCTGGGACTGGTCCTTTCGCAGCCATTTTCTGTCCAACCAAACAGCCGTCTCAGGAAGGTAACCAACCAGGGCTTCATTGCAGATGGACGGAGACAGCTCGACCACGGACGCCTCCCAGCTGGGCATCGCTGGAGAGTACATGGCATCCGGTCATTACGTTCTCCAGTCTCAAGATGATGACGGCGAGGAGAATCTGAATGACCACGATGACAGCGGTATCAAAGAGAACTTCAGGGAGCAGGACATCTATCTTCCTATCGCCAACGTGGCTCGCATCATGAAGAACGCCGTTCCTCAGACTGGAAAGATCGCGAAAGACGCCAAGGAGTGCGTGCAGGAGTGCGTGAGCGAGTTCATCAGCTTCATCACGTCGGAGGCGAGCGAGCGCTGCCACCAGGAGAAGAGGAAGACCATCAACGGGGAGGACATCCTGTTCGCCATGTCCACGCTGGGCTTCGACATGTACGTGGAGCCGCTGAAGCTCTACCTGCAGAAGTTCCGAGAGCCTAGCTGGCAACAGACAGAGCATCAAGCAGCTGGGTTTCCAGATGGGTTGGGAACTTCAGCGACAAACTGGgccaTGAAGGGCGAGAAGGGGATCCCCGGGGTGTCGGTGGGAGAAGGCCTGGGAGATGAACTCACGGACGACAGCTTCACAAACCCACTGCCAGCTGGGATTATCACAGCAGACGGTCAGCAGCAGAACGTCATGGTGTACACCACCTCATATCAACAGATCCCCACCGTGCAGCAGATCCAGTTTTCATGACGAGACCTGAACACGGCGGCTCCTTTCACCAGGCACCGATCGGCGGGttgaccccctcccccccagggTAGAGGTTAtcagacagggagggagggagagggaggagtcTGCAGAAACCCCCTCATGTACAGAGCAATCACTACCTGTTGAGTAGAAAGTCTAGTTCCTAGTTGTGAGGTACCAAATGTTTTGGGAGTGCAGTCCAAAGCAGTTGGCAAAATTGAGGCTTTATTTTAAAGGCTAGTCTTTATGACATGATTTAGTGGTCggaatatgttttgtgtgtgttcatgtgttttgCTTTTATGCATTTAATTGATTTGCGGCgaagggtgggggtgggtggggggggaatAATGGGAAGTGTTGGATGTTTATTTTTGAACACCTCTGTGTTAACTGAGAGAAGGCACGTTGTTACTGCCACATCAGATCATGCAGCTCTTTTGTAAGTTGACACAATTTACCATGTGCTTTAATGTTATGTAAATCCTTTGAATAAAAATTCAAAAGTGATGTTTAAAA
>XM_039791878.1
GGCCCTCTATCGGCAAGCGCCGGTGATGCAGCCGCGGCTACGCGCTGGGACTGGTCCTTTCGCAGCCATTTTCTGTCCAACCAAACAGCCGTCTCAGGAAGGTAACCAACCAGGGCTTCATTGCAGATGGACGGAGACAGCTCGACCACGGACGCCTCCCAGCTGGGCATCGCTGGAGAGTACATGGCATCCGGTCATTACGTTCTCCAGTCTCAAGATGATGACGGCGAGGAGAATCTGAATGACCACGATGACAGCGGTATCAAAGAGAACTTCAGGGAGCAGGACATCTATCTTCCTATCGCCAACGTGGCTCGCATCATGAAGAACGCCGTTCCTCAGACTGGAAAGATCGCGAAAGACGCCAAGGAGTGCGTGCAGGAGTGCGTGAGCGAGTTCATCAGCTTCATCACGTCGGAGGCGAGCGAGCGCTGCCACCAGGAGAAGAGGAAGACCATCAACGGGGAGGACATCCTGTTCGCCATGTCCACGCTGGGCTTCGACATGTACGTGGAGCCGCTGAAGCTCTACCTGCAGAAGTTCCGAGAGgccaTGAAGGGCGAGAAGGGGATCCCCGGGGTGTCGGTGGGAGAAGGCCTGGGAGATGAACTCACGGACGACAGCTTCACAAACCCACTGCCAGCTGGGATTATCACAGCAGACGGTCAGCAGCAGAACGTCATGGTGTACACCACCTCATATCAACAGATCCCCACCGTGCAGCAGATCCAGTTTTCATGACGAGACCTGAACACGGCGGCTCCTTTCACCAGGCACCGATCGGCGGGttgaccccctcccccccagggTAGAGGTTAtcagacagggagggagggagagggaggagtcTGCAGAAACCCCCTCATGTACAGAGCAATCACTACCTGTTGAGTAGAAAGTCTAGTTCCTAGTTGTGAGGTACCAAATGTTTTGGGAGTGCAGTCCAAAGCAGTTGGCAAAATTGAGGCTTTATTTTAAAGGCTAGTCTTTATGACATGATTTAGTGGTCggaatatgttttgtgtgtgttcatgtgttttgCTTTTATGCATTTAATTGATTTGCGGCgaagggtgggggtgggtggggggggaatAATGGGAAGTGTTGGATGTTTATTTTTGAACACCTCTGTGTTAACTGAGAGAAGGCACGTTGTTACTGCCACATCAGATCATGCAGCTCTTTTGTAAGTTGACACAATTTACCATGTGCTTTAATGTTATGTAAATCCTTTGAATAAAAATTCAAAAGTGATGTTTAAAA

Function

symbol description
nfyb Enables DNA binding activity; DNA-binding transcription activator activity, RNA polymerase II-specific; and DNA-binding transcription factor binding activity. Contributes to RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in nucleoplasm. Part of CCAAT-binding activity factor complex and protein-DNA complex.

NR:

description
PREDICTED: nuclear transcription factor Y subunit beta

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K08065 NFYB, HAP3; nuclear transcription Y subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791875.1 False 1341 mRNA 0.52 8 24365338 24375224
XM_039791876.1 True 1474 mRNA 0.50 8 24365338 24375055
XM_039791877.1 False 1338 mRNA 0.52 8 24365338 24375224
XM_039791878.1 False 1266 mRNA 0.52 7 24365338 24375224

Neighbor

gene id symbol gene type direction distance location
podxl podxl coding downstream 80629 24256783 ~ 24284709 (-)
net1 net1,LOC104963784,LOC103383002,LOC107560732 coding downstream 255765 24066409 ~ 24109573 (-)
glt8d2 glt8d2 coding downstream 479746 23868156 ~ 23885592 (-)
sbf1 sbf1 coding downstream 555992 23718339 ~ 23809346 (-)
cbll1 cbll1 coding downstream 681270 23677168 ~ 23684068 (-)
slc41a2b LOC103365955,LOC104923736,LOC106530824 coding upstream 133552 24508776 ~ 24565806 (-)
trnap-agg_20 NA coding upstream 201726 24576950 ~ 24577021 (-)
LOC120553455 NA coding upstream 416268 24791492 ~ 24797223 (-)
aldh1l2 aldh1l2,LOC104948869 coding upstream 422171 24797395 ~ 24826222 (-)
samm50l samm50,LOC108250208,LOC102304796 coding upstream 468168 24843392 ~ 24863709 (-)
G230089 NA non-coding downstream 49481 24315083 ~ 24315857 (-)
G230067 NA non-coding downstream 139927 24204030 ~ 24225411 (-)
LOC120553435 NA non-coding downstream 163213 24117732 ~ 24202125 (-)
G229987 NA non-coding downstream 284185 24080527 ~ 24081153 (-)
G229952 NA non-coding downstream 416558 23946497 ~ 23948780 (-)
G230118 NA non-coding upstream 103870 24479094 ~ 24479656 (-)
G230119 NA non-coding upstream 104483 24479707 ~ 24481679 (-)
G230120 NA non-coding upstream 106463 24481687 ~ 24482539 (-)
G230121 NA non-coding upstream 107391 24482615 ~ 24485522 (-)
G230165 NA non-coding upstream 194078 24569302 ~ 24571318 (-)
G229950 gdi2,LOC100708443,LOC102215003 other downstream 450646 23908556 ~ 23914692 (-)
LOC120553046 NA other downstream 501364 23858219 ~ 23863974 (-)
LOC120553170 NA other downstream 653534 23690519 ~ 23711804 (-)
G229907 NA other downstream 665140 23699697 ~ 23700198 (-)
glipr1a NA other downstream 1154841 23203768 ~ 23210497 (-)
sult4a1 sult4a1,LOC102784496 other upstream 816037 25191261 ~ 25217693 (-)
LOC120553115 NA other upstream 1220354 25595578 ~ 25601380 (-)
mkrn1 mkrn1 other upstream 1796096 26171320 ~ 26196510 (-)
G230594 mrps33 other upstream 2000468 26375692 ~ 26381365 (-)
G230730 NA other upstream 2741982 27117206 ~ 27118597 (-)

Expression


Co-expression Network