med21 (med21,LOC102798687)


Basic Information

Item Value
gene id med21
gene name med21,LOC102798687
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21295513 ~ 21301256 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791881.1
CAGGACATTCTCGCGACAATGACAGCGGGATTTAGTTAAATTACAGAAAAATATGGCGGACCGGCTAACGCAACTCCAAGACGCAGTCAATTCGCTTGCAGATCAGTTTTGTAATGCCATCGGCGTCCTGCAACAATGTGCGCCTCCTGCCTCCTTCAGTAACATCCAGACGGCTATCAACAGAGACCAGCCAGCAAACCCAACCGAAGAGTATGCCCAGCTGTTTGCAGCTCTGATCGCCAGAACAGCCAAAGATGTGGATGTACTCATCGACTCTCTGCCCAGTGAGGAGTCCACGGCAGCTCTGCAGGCGGCCAGTCTGCggcagctggaggaggagaaccACGATGCCGCCGCCCGTCTGGAGGAGGTGGTTTACCGCGGCGATATGCTGCTGGAGAAGATCCAGAGCGCCCTGGCTGACATCGCCCAGTCTCAGCTCCGCACCCGCAACGGACCACCTCACCAGCCCTCACCAGCCGAATCCTGACCCGGCAGTGTGCAAAACGCACTTCTGGACAATTTTCAGCCATTTCCCTTCTCCCCATTTTGACTCTTGGTTTTTACCCTCAGACATCAGCTGTAAGCCTCAGAACACTCGCAATGCTGAATTTTTCTGTGAAGGTAACGCAAGGTGCCATACAGTTAGCGAAACATCATTTGGTTGCTTAACTGCAATGTTCTTCTACACAGCAGCCACCGGTCTCCAGGCAAACGcagaaaaatgtgtaaaaacacTAGATGCCTGTTGACGACgtctcatgtttgttttttttttttttatgttgtagggctgctccctcttagacgattagtcgactaatcggtcgttttggtcttagtcaacttag

Function

symbol description
med21 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED21 (mediator complex subunit 21).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 21-like isoform X2

GO: NA

KEGG:

id description
K15152 MED21, SRB7; mediator of RNA polymerase II transcription subunit 21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791881.1 True 851 mRNA 0.51 4 21295513 21301256

Neighbor

gene id symbol gene type direction distance location
LOC120553384 stk38l coding downstream 2277 21269874 ~ 21293236 (-)
LOC120553569 arntl2,LOC100698791,LOC102799561,LOC102199297,LOC101476868,LOC102299859 coding downstream 33811 21234254 ~ 21261702 (-)
slc13a4 slc13a4 coding downstream 111657 21153201 ~ 21183856 (-)
pik3cg pik3cg coding downstream 249127 21022335 ~ 21046386 (-)
ano2b ano2,LOC103459666,LOC108245555,LOC102202227 coding downstream 287278 20925173 ~ 21008235 (-)
gas2l3 gas2l3 coding upstream 34281 21335537 ~ 21365108 (-)
slc38a4 slc38a4 coding upstream 217369 21518625 ~ 21571113 (-)
LOC120553490 ano4,LOC102780176 coding upstream 382954 21684210 ~ 21753271 (-)
LOC120553085 LOC103357120 coding upstream 514926 21816182 ~ 21827934 (-)
selenoo2 LOC106935628,LOC103357121,LOC107081058 coding upstream 527755 21829011 ~ 21836596 (-)
G229296 NA non-coding downstream 30701 21264501 ~ 21264812 (-)
G229248 NA non-coding downstream 96254 21198468 ~ 21199259 (-)
G229235 NA non-coding downstream 233077 21019259 ~ 21062436 (-)
G229172 NA non-coding downstream 427984 20867300 ~ 20867529 (-)
G229168 NA non-coding downstream 515605 20779683 ~ 20779908 (-)
G229351 scaf11,LOC102797309 non-coding upstream 149207 21450463 ~ 21453152 (-)
G229390 NA non-coding upstream 341259 21642515 ~ 21642768 (-)
G229392 NA non-coding upstream 354646 21655902 ~ 21656162 (-)
G229413 NA non-coding upstream 380304 21681560 ~ 21682539 (-)
LOC120553093 NA non-coding upstream 475777 21777033 ~ 21777676 (-)
ptprz1b NA other downstream 149980 21063691 ~ 21145533 (-)
G229199 NA other downstream 337293 20957657 ~ 20958220 (-)
cdk17 LOC104930593 other downstream 940886 20301092 ~ 20354627 (-)
rerg rerg other downstream 1173120 20066895 ~ 20122393 (-)
etv6 etv6 other downstream 1456163 19806814 ~ 19839350 (-)
slc38a2 slc38a2 other upstream 159820 21461076 ~ 21474602 (-)
LOC120553090 NA other upstream 469832 21771088 ~ 21811097 (-)
G229716 NA other upstream 1803504 23104760 ~ 23239573 (-)
glipr1a NA other upstream 1902512 23203768 ~ 23210497 (-)
LOC120553170 NA other upstream 2389263 23690519 ~ 23711804 (-)

Expression


Co-expression Network