optn (optn)


Basic Information

Item Value
gene id optn
gene name optn
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 20410195 ~ 20430496 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792011.1
CTCGGTTTCCGTACGTGACTAGACGTTGTTAACGTTACTAACCAGAAGCAGTTCAGTAGGTTGGTCGACACACATTTTGCCATCTCTCCGAGTGTTTCTGCCTTTGGAGTCAACATCCACACTGTGTTTAGCTAGTTCCGAAGTTGACAGCAGCGTCATGGCGTCTGGAGGCCCCGTGATGAACGGCGACGTCTCATGCTCTCAGGGTCAGTCGGGTACGCTGGAGGAAACCCTGCAGCAGATGAACATCCTCATCCAGGAGAACCGAGACCTGAAAGAGGCCCTGCGTCAGACCAACCTGACGATGAAGGAGCGTTTCGAGGGTCTGTCTGCGTGGCGGGAGAAGCAGCGGGAGGAGCGGGGCTTCCTGGAGAGCAGGCTGGAGGAGGCTCGGGGCCGCATGGAGGAGCTGACCCTGGAACTGAACAAGAGGACGGCGGAGGAGGGGAGGACAGGGGGAGGCTTGCTGGCGGTGTCATCCAATCAGAGTGCAGAGCTGATTGCCCTGCGTGCCCAGGTTGCTCGCCTGCAGGCAGAGAAGAACGACCTGGTGGCCATGAACTCTGAGCTGCAGCTGAGAGCCGACAACTCACAAGACGACTCCTTCATTGAGATCATCAGAGTCTCGGATGGAGGTGTAGACGGCACGAACGATGCGTGTGGTTCGGAACACGGCAGACGTCAGGAACTGAGCATGACGGCATCCCAGCAGGACAGCAAGGAGATGACTATCAGCCAGCTCCTCCAGTCACTGAGGAACGAGACGCAGCGCGCCGAGCGGCTGCAGGCCGAGCTGCAGGCTTCTTCTGCCAGAATTAGAGAGCTGGAAGAGAGGAAGTCTAATGTGGAGGAATCAACACAGACCCAAGCAGAGACCAAGGAGGATTCTGGGAAAGAGGAAAAGgCAGCATCTGAGGTGGAGAATCTGAAGTGTCAGATGAGAACGCTGTTTAAAGAACTGCAGCAGGCCCAGAGCAAGCTGGATGAAGCAGAAGGCATGAAGAAGAACCTGCAGGACAGATGTCGGGAGGTGGAGCAGGACGTGGTCACTCTGAAGGCTCAGCTGGTGGAGAAGCAGGCTGTTCAGTCGGAGAACGACCGGCTCAAGCTGCAGGTGGACAGCATGCAGGCTCAGGGCCAGATGGAGCAGAGGAAGGCTGGGGAGGAGAGGAACAACCTGGCCCAGCTGAAGGATGCCTACACCAAGCTGTTTGAAGACTACAATGAACtcaaagaggagaagaagaagagagagTCTCAGCTGGTGCAGAAGGAGGTGGTGGACCAGCTGCAGGAGCGGCTGACTGCCGCTGAAGAGGCCCTGGCTGCTAAACAGAACCACATCGATCACATGAAGCAGGAGATCTacaagaaggaggaggagctgcagaCCATATCTGTGTTCCAGGCTCAGGCAGAGGTCTACTCCTCAGACTTCTACGCAGAGCGAGCAGCGAGGGAGAAACTCCACGAAGAGAGGGAGCGTCTGGCTGCTCAGCTGGAGTATGTAAAGAAGCAGAACACCCACCTGCAGGAGGAGATGGAATCACTGGGCAGGCGGTCGCTGAACGAGATGCAGAGGAGACATGTGTCACAGGGAGGAAATGCACACGGAGCTGGTGCTAGTCTGATTGGAAGAGGTACTGACTGGCAGCATCAGGGGAACATTCCCGAACACGCCTGTCCCAAGTGCAACGAGATCCTGCCGGACCTGGACTCCCTGCAGATCCACATCATGGACTGCATCAACTAGACCTCCATCATGACAAGCAACCACGACAACAGCAGCTACGTTAGCACCTTAATCTGAGTCTTCCTCCGCTTTTATCTTTACCTGAGACAACTCATCATTGTTCCACGATAAACTCAGTTACATTCATTCTCAGATGGCAACATTTTGCTTTTTCTAAGGATTTAAATGGAGAGATTTTAAAGCTGTATTGAGGGTTCTTTTGAAAATAATTGGTCCTCtgtagtttgttttatttgagaATTGCTTATAAATATTTGGAATACAACATAAGATTTTGGGAAAAGAATTGTAAACTGAAGATGAACTTCTTCAAGGGAAAACTTGTCTGGAATATTAAAAGAGAAAGTTAACGCAACCCCTGATGAGATTTTAGTGTAGTGCTGTCTGCCTGTCATGTGCACATTACGTAAGTGCAGCCTTCACAAGTTGCATTCGTTTACCAAGTACTTGGTTGCTGAaggctattttatttttaatttttttggttTCCTCGAGAAattctttttatatttcttgCTTGAAAAGTATATTTTGGCTAATGGGTTGTTGGTGTTGGGGGGGTGAAAGGAGCATGCACCATGTAGGCACTTTAATATGaagataaatattttattttcactgtaaTGCAGTTGATACCTGGTAATTagaatgtaaaatatttaaCTTGTTAATCAACCTATCACTGTATACCTGTATGCCTTTGTAATTCCATGTGCAGGAGGCTCCAACACCCTGCTAATTCTGTAGTCTGTAGATTATAAAGGACTTCTGATTTCATGTTGTAATTCtgtgaatgaaaataaaattattgcaAATTTC
>XM_039792012.1
caaagccagatatttccttcaagagttggtggagaccaaaaacaaagctcaaagaaagtaaaaaaaggacTGGCTCAGTTGGCCAGAAACATGATCGCCATTTCAACTTTATAAGCGTCATGGCGTCTGGAGGCCCCGTGATGAACGGCGACGTCTCATGCTCTCAGGGTCAGTCGGGTACGCTGGAGGAAACCCTGCAGCAGATGAACATCCTCATCCAGGAGAACCGAGACCTGAAAGAGGCCCTGCGTCAGACCAACCTGACGATGAAGGAGCGTTTCGAGGGTCTGTCTGCGTGGCGGGAGAAGCAGCGGGAGGAGCGGGGCTTCCTGGAGAGCAGGCTGGAGGAGGCTCGGGGCCGCATGGAGGAGCTGACCCTGGAACTGAACAAGAGGACGGCGGAGGAGGGGAGGACAGGGGGAGGCTTGCTGGCGGTGTCATCCAATCAGAGTGCAGAGCTGATTGCCCTGCGTGCCCAGGTTGCTCGCCTGCAGGCAGAGAAGAACGACCTGGTGGCCATGAACTCTGAGCTGCAGCTGAGAGCCGACAACTCACAAGACGACTCCTTCATTGAGATCATCAGAGTCTCGGATGGAGGTGTAGACGGCACGAACGATGCGTGTGGTTCGGAACACGGCAGACGTCAGGAACTGAGCATGACGGCATCCCAGCAGGACAGCAAGGAGATGACTATCAGCCAGCTCCTCCAGTCACTGAGGAACGAGACGCAGCGCGCCGAGCGGCTGCAGGCCGAGCTGCAGGCTTCTTCTGCCAGAATTAGAGAGCTGGAAGAGAGGAAGTCTAATGTGGAGGAATCAACACAGACCCAAGCAGAGACCAAGGAGGATTCTGGGAAAGAGGAAAAGgCAGCATCTGAGGTGGAGAATCTGAAGTGTCAGATGAGAACGCTGTTTAAAGAACTGCAGCAGGCCCAGAGCAAGCTGGATGAAGCAGAAGGCATGAAGAAGAACCTGCAGGACAGATGTCGGGAGGTGGAGCAGGACGTGGTCACTCTGAAGGCTCAGCTGGTGGAGAAGCAGGCTGTTCAGTCGGAGAACGACCGGCTCAAGCTGCAGGTGGACAGCATGCAGGCTCAGGGCCAGATGGAGCAGAGGAAGGCTGGGGAGGAGAGGAACAACCTGGCCCAGCTGAAGGATGCCTACACCAAGCTGTTTGAAGACTACAATGAACtcaaagaggagaagaagaagagagagTCTCAGCTGGTGCAGAAGGAGGTGGTGGACCAGCTGCAGGAGCGGCTGACTGCCGCTGAAGAGGCCCTGGCTGCTAAACAGAACCACATCGATCACATGAAGCAGGAGATCTacaagaaggaggaggagctgcagaCCATATCTGTGTTCCAGGCTCAGGCAGAGGTCTACTCCTCAGACTTCTACGCAGAGCGAGCAGCGAGGGAGAAACTCCACGAAGAGAGGGAGCGTCTGGCTGCTCAGCTGGAGTATGTAAAGAAGCAGAACACCCACCTGCAGGAGGAGATGGAATCACTGGGCAGGCGGTCGCTGAACGAGATGCAGAGGAGACATGTGTCACAGGGAGGAAATGCACACGGAGCTGGTGCTAGTCTGATTGGAAGAGGTACTGACTGGCAGCATCAGGGGAACATTCCCGAACACGCCTGTCCCAAGTGCAACGAGATCCTGCCGGACCTGGACTCCCTGCAGATCCACATCATGGACTGCATCAACTAGACCTCCATCATGACAAGCAACCACGACAACAGCAGCTACGTTAGCACCTTAATCTGAGTCTTCCTCCGCTTTTATCTTTACCTGAGACAACTCATCATTGTTCCACGATAAACTCAGTTACATTCATTCTCAGATGGCAACATTTTGCTTTTTCTAAGGATTTAAATGGAGAGATTTTAAAGCTGTATTGAGGGTTCTTTTGAAAATAATTGGTCCTCtgtagtttgttttatttgagaATTGCTTATAAATATTTGGAATACAACATAAGATTTTGGGAAAAGAATTGTAAACTGAAGATGAACTTCTTCAAGGGAAAACTTGTCTGGAATATTAAAAGAGAAAGTTAACGCAACCCCTGATGAGATTTTAGTGTAGTGCTGTCTGCCTGTCATGTGCACATTACGTAAGTGCAGCCTTCACAAGTTGCATTCGTTTACCAAGTACTTGGTTGCTGAaggctattttatttttaatttttttggttTCCTCGAGAAattctttttatatttcttgCTTGAAAAGTATATTTTGGCTAATGGGTTGTTGGTGTTGGGGGGGTGAAAGGAGCATGCACCATGTAGGCACTTTAATATGaagataaatattttattttcactgtaaTGCAGTTGATACCTGGTAATTagaatgtaaaatatttaaCTTGTTAATCAACCTATCACTGTATACCTGTATGCCTTTGTAATTCCATGTGCAGGAGGCTCCAACACCCTGCTAATTCTGTAGTCTGTAGATTATAAAGGACTTCTGATTTCATGTTGTAATTCtgtgaatgaaaataaaattattgcaAATTTC

Function

symbol description
optn Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity. Acts upstream of or within axonogenesis; defense response to bacterium; and vesicle localization. Predicted to be located in autophagosome; perinuclear region of cytoplasm; and recycling endosome. Predicted to be active in Golgi apparatus and nucleus. Is expressed in several structures, including eye; otic vesicle; periocular mesenchyme; pleuroperitoneal region; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Paget's disease of bone; amyotrophic lateral sclerosis (multiple); and glaucoma (multiple). Orthologous to human OPTN (optineurin).

NR:

description
PREDICTED: optineurin

GO: NA

KEGG:

id description
K19946 OPTN, FIP2; optineurin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792011.1 True 2572 mRNA 0.50 13 20410195 20420877
XM_039792012.1 False 2534 mRNA 0.49 13 20410195 20430496

Neighbor

gene id symbol gene type direction distance location
mcm10 mcm10,LOC102783079 coding downstream 519 20394066 ~ 20409676 (-)
hcfc2 hcfc2 coding downstream 123608 20272526 ~ 20286587 (-)
cep83 cep83 coding downstream 138051 20260025 ~ 20272144 (-)
LOC120553419 timp3,LOC103152565 coding downstream 409673 19983479 ~ 20000522 (-)
LOC120553212 fam19a2,LOC103364248 coding downstream 603440 19733066 ~ 19806755 (-)
camk1da camk1d coding upstream 25179 20455675 ~ 20530744 (-)
LOC120553073 NA coding upstream 106560 20537056 ~ 20544945 (-)
cdc123 cdc123 coding upstream 119538 20550034 ~ 20564985 (-)
il15ra NA coding upstream 190049 20620545 ~ 20640722 (-)
ano2b ano2,LOC103459666,LOC108245555,LOC102202227 coding upstream 494677 20925173 ~ 21008235 (-)
G229071 NA non-coding downstream 18687 20382465 ~ 20391508 (-)
G229062 NA non-coding downstream 52632 20355636 ~ 20357563 (-)
G228946 LOC103364246,LOC103152567,LOC106913527,LOC103459763,LOC106945279 non-coding downstream 504252 19852964 ~ 19905943 (-)
G229076 ccdc3,LOC102778083 non-coding upstream 3659 20434155 ~ 20437536 (-)
G229079 NA non-coding upstream 11824 20442320 ~ 20450128 (-)
G229095 NA non-coding upstream 104789 20535285 ~ 20535597 (-)
G229096 NA non-coding upstream 106077 20536573 ~ 20536801 (-)
G229098 NA non-coding upstream 110692 20541188 ~ 20542936 (-)
cdk17 LOC104930593 other downstream 55568 20301092 ~ 20354627 (-)
rerg rerg other downstream 287802 20066895 ~ 20122393 (-)
etv6 etv6 other downstream 570845 19806814 ~ 19839350 (-)
G228934 fam19a2,LOC103364248 other downstream 603097 19733102 ~ 19807098 (-)
sox5 sox5 other downstream 1139859 19028609 ~ 19270336 (-)
G229199 NA other upstream 527161 20957657 ~ 20958220 (-)
ptprz1b NA other upstream 633195 21063691 ~ 21145533 (-)
slc38a2 slc38a2 other upstream 1030580 21461076 ~ 21474602 (-)
LOC120553090 NA other upstream 1340592 21771088 ~ 21811097 (-)
G229716 NA other upstream 2674264 23104760 ~ 23239573 (-)

Expression


Co-expression Network