ccdc3a (ccdc3,LOC102778083)


Basic Information

Item Value
gene id ccdc3a
gene name ccdc3,LOC102778083
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 20422837 ~ 20434548 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792013.1
GTGTCGCTCCCagcgcagacagacagatgaggTGGAAACACTGGGAACACAGCAACAGGTTGGAGTAGTCGAAGTTTCTGAGAATTGATTCGACTTTCGAGTTCTCTTTAGGAGTCTGGAGGTGAGGAGATCTGAGTTTGTGCAAGTTAAATTAATGGGCAAAGGAACTGTGGTCGAACGTTGTGCAAAAAGTTCCTTTGGCAtacttttatgagtttttggTCAAGTAACGTTGGAGCATCCTCAAGCGTCCAGGTAACCATCACGCGCGTTTAGTTCTATAAACGCAGCATTTGCAACTCACTTTTTGCAGCTTGTATGTTTGGAGAGACTGCCCTCCAGCATAAAACAGCCAATTTAGACCGAATAATAAATTACCACTTTTCTTCCGTGAGGCATCACCACAGGGTTTACAAACTGACAGAAGCTTGTAACCCTTCTCGGGACCTTCAGGATGTTTTCCATGGCTGTCCTCCTCGCAGCGCTCGGCGTTTTTGCGCATCTGGGCACTTTTACGCACGGGTGCCAGCTCCCCTCCGAGTGGCGGCCGCTGAGCGAGGGCTGCCGGGCGGAGCTGGCGGAGATCATAGTCTACGCCCGGGTCCTGGCGATCCACCGGGAGCCCCCGGGGGGCAGCCTGTATAACTCGCTGCCCTTCGGGTTCGGGTATGGGTACGAGGGCGCGGAGGAAGGGCTGCTGTACTCTGCGGAGGTGGAGATGCTGTGCGACCAGGCCTGGGGCAGCATGCTGGAGGTGCCCACCGGATCAAGGCTCAACCTGACCGGACTGGGCTACCTGTCCTGCCAGTCCCACACCGTGATGGAGAACTACTCCTACTTCTTCTTCCTCAGGATGGATGAGAACTACAACATCCTCCCCCATGGTGTCAACTTCCAGGACGCCATCTTCCCAGACACGTCCGACAACAGGCGCATGTTCTCCAGCCTCTTCCAGTTCTCCAACTGCACCCAAGGGAGCCAGCCTTTCCACACCTTCAGCCCTGAGTGGGACACCCAGGAGGACAGCAGGCTGCTGTGCTCCTCGGTGCAGGCCGCGCtgtttgaggaggaggagagaggccgCAAGATGCAGGAGCGCCTGGCCGCGGCCGAGCGCAGGAACCGGCAGCTGAAGGAGCGCGTTCGCAAGGCCAAACGCTCCCTGAGGAACGCCCGCAAGGCCGCGCGCAAGGCCCAGCAGGAGGCGCAGGAGCTGCAGGAGAAGCTGAAGGCTGCAGAGCGCAGGGCGGGGCACCACCTCAACGCCATAACGCAGGAGGAGCCTCCACCCGGGCGTTATGCAAGCACGGCGCTACGCAAGAGGATGCAACTTTAACTAATCCAAAACTGGCAACCCACCTGGACTGAAAACTGGCCGCGGAGAGCGAGAGACTGCTGGGCGGTCTCTATGTAAGGGACAAAGAAA

Function

symbol description
ccdc3 Involved in negative regulation of gene expression; negative regulation of lipid metabolic process; and negative regulation of tumor necrosis factor-mediated signaling pathway. Located in endoplasmic reticulum and extracellular region.

NR:

description
PREDICTED: coiled-coil domain-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792013.1 True 1426 mRNA 0.57 3 20422837 20434548

Neighbor

gene id symbol gene type direction distance location
LOC120553582 phyh coding upstream 46489 20364803 ~ 20376348 (+)
LOC120553583 phyh coding upstream 60317 20355616 ~ 20362520 (+)
elk3 LOC104930592,LOC102779228,LOC102209493,LOC102296588 coding upstream 124751 20287264 ~ 20298086 (+)
plxnc1 NA coding upstream 162409 20212787 ~ 20260428 (+)
LOC120553751 NA coding upstream 231929 20185082 ~ 20190908 (+)
nudt5 nudt5 coding downstream 131049 20565597 ~ 20570560 (+)
fbxo18 NA coding downstream 136440 20570988 ~ 20603179 (+)
rbm17 rbm17 coding downstream 208359 20642907 ~ 20655914 (+)
pfkfb3 pfkfb3,LOC102775874,LOC104933238 coding downstream 243501 20678049 ~ 20689946 (+)
ntf3 ntf3 coding downstream 381571 20816119 ~ 20864618 (+)
G228989 NA non-coding upstream 121396 20298734 ~ 20301441 (+)
LOC120553527 NA non-coding upstream 500983 19921100 ~ 19921854 (+)
G228922 NA non-coding upstream 506520 19916115 ~ 19916317 (+)
G228912 NA non-coding upstream 551114 19869393 ~ 19871723 (+)
LOC120553215 NA non-coding upstream 581175 19834007 ~ 19841662 (+)
G229058 NA non-coding downstream 4910 20439458 ~ 20448557 (+)
G229060 NA non-coding downstream 8119 20442667 ~ 20454788 (+)
G229108 cdc123,LOC102776001 non-coding downstream 128515 20563063 ~ 20565180 (+)
G229130 NA non-coding downstream 172684 20607232 ~ 20607530 (+)
G229182 NA non-coding downstream 489400 20923948 ~ 20925059 (+)
ucmaa NA other upstream 31431 20382393 ~ 20391406 (+)
LOC120553418 NA other upstream 197652 20190928 ~ 20225185 (+)
LOC120553749 NA other upstream 249430 20147078 ~ 20173407 (+)
G228924 NA other upstream 437189 19982248 ~ 19985648 (+)
LOC120553104 LOC103364246,LOC103152567,LOC106913527,LOC103459763,LOC103459764,LOC106945279 other upstream 516885 19852928 ~ 19905952 (+)
LOC120553023 LOC106946322,LOC103151516,LOC104922640 other downstream 713719 21148267 ~ 21150351 (+)
arid2 arid2 other downstream 942324 21376872 ~ 21429238 (+)
G229423 NA other downstream 1403374 21837922 ~ 21847020 (+)
G229425 NA other downstream 1414663 21849211 ~ 21850601 (+)
G229422 NA other downstream 1423435 21857983 ~ 21859209 (+)

Expression


Co-expression Network