net1 (net1,LOC104963784,LOC103383002,LOC107560732)


Basic Information

Item Value
gene id net1
gene name net1,LOC104963784,LOC103383002,LOC107560732
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24066409 ~ 24109573 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792024.1
CTGCTGTTGTAGTAGATAAAAATTAGATGTATCGTTATTATTCCGTTTATCCCATTCAGTAGCACATAGTTAAAATACCCCTGGTATATGACATTTCAAATGGGTGAAACCGGTGAAGTCCCAGCTCCCGTTTCGACTTCAGAGAAACCAAAAAGACAAGCGAGCTCCAGTAACTTGCAGAGGAAGTTTTCAGCGGATGAAGGACAGTCTACCCCGgagaacaacaacagcaggacTCTGAGACGtcaGTGGACCGGGTGTCATGTTCCCCTTCCCACCCTGACAGGGAGGATCCCTATCGGTCAGTCCTGGTCTGAGTTGGGAGGTCAGCGCTGCATCATGCTGAGGCTGTGGTCACTGCGAAGAGGAAGCTCCTTCAGCTTCATCACCCCCGGGCCACAATGGGACTTCAGTCTGAAACGGAAACGCAGAGAGAAGGATGACAGCGACGCAGTCAGCCTCTGCAGCTTCGACTTTAAGGAACCCAGCACAAAGCGGGTCCGTCCTCTCGGCAGGGTGACGTCGCTAGCCAACCTCATCTCTCCGGTGAAGAATGGGGCCGTCCGGCGCTTCGGCCAAACCATCCAGGCCTCTTTCCGGGGCGATGGCAAGTCGCCGGGCGCGCCCCATAAGCCTTGCAGCAAGGCGGCGGCCCCCACACCGCCCAAAAGGAGGAACAGCATGCTGTGGTCAGAGACGCTAGACGTCCACCAGAAGGGAACTTTCTCTACCAAAGAAATCAAGCGGCAGGAGGCCATATTTGAGCTGTATCGTGGAGAACAGGACCTGATTGAGGACCTCCAGCTCGCACGCAAGGCGTACCACGACCCGATGCTGAAGCTCTCCATTATGTCAGAGGAGGAGCTCACGCACATCTTCGGCAACCTGGACGCCTACATCCCTCTGCACGAGGACCTCCTGGCGCAGCTCACCAAAGCCACGGCGCCAGACGGGACTGTGGGCCGGATCGGACAGATTGTCGTAGACTGGCTGCCAAGGCTCAACGCCTACAAGAACTACTGCAGCAACCAGCTGGCAGCCAAGGCGCTGCTGGACCAGAAGAAGCAGGACCCGCGCGTGCAGGACTTCCTGCAGCGCTGCCTCGAGTCGCCCTTCAGCAGGAAGCTGGACCTGTGGAGCTTCCTGGACATCCCGCGCTCGCGCCTGGTCAAGTACCCGCTCCTGCTCAAAGAGATCCTGAGACACACCGCGGCAGAGCACCCGGACGCCGCCAGCCTGGAGGAAGCGatcaCCATCATGCAGGGCGTGCTGTCTGACATCAACATGAAGAAGGGAGAGTCCGAGTGCCAGTACTACATCGACAAGTTGGAGTATCTGGACGACAAGCAGAGAGACCCTCTGATCGAGCAGTGCAAGAGCCTGCTGTGTCATGGCGAGCTGCGGAACAAGAGCGGCACGAAGCTGCATGTGTTCCTGTTCACCGAGCTGCTGGTCCTGACCCGCCCCGTCACCAGGAACGAGCGCCAGTGTTTCCAGGTGTACCGGCAGCCAATCCCAGTGCACGATCTCCTGTTGGACGACCTGCAGGATGGAGACGTCAGAATGGGCGGATCCTTCAGAGGTGCTTTCAGCAACGCAGACAAAGCCAAGAACATTTTCCGCGTGCGTTCCCAAGACCCGAGCCAGGCGCAGTCCCACACCCTGCAGGTCAACGACGTCTTCCACAAGCAGCAGTGGCTGAACTGCCTCCGCAGCGCCATCTCCGTCCACCGGCCGCTCGGCGAGCCCTCGGCGCCGGCCCCCCCGCCGGCGAGCGACGCCCGCTCCAAGCGCCGCCCGTCCTCCATCTCCGCCATCGTCCACATGGAGGAGGCGGATGAGAACTGCCTGCGGCCGACCTCTCAGTCCGCCCCCAGCACGCCGTGCAACAGCGCGGCGCCCAGCCCCACCACAAAGTCCTCCCTATCCCGCTCCTCCTCGTCAGCTTCGTCGTCGTCCTCTTCGACGTCGCCGCTCTCCTCGCTCACATCGCACAAAACCAAAAAGGACAAGAAGTCTCTGTGCTCTTTAGGGAAGAGAAAAGAGACTATGGTGTGAAGTGAGGTGAAAAGGAGAAAAATGGACTCCTGGgtggacatttttgtaaaaaggaaacacaacgTGGAGAAGCGTGGTacttgtatttatgtgtgtctgcgtgcgtgcgtattATTAAAACAGTGTTCTGTGTTACTGTC
>XM_039792025.1
TGCTGTTGTAGTAGATAAAAATTAGATGTATCGTTATTATTCCGTTTATCCCATTCAGTAGCACATAGTTAAAATACCCCTGGTATATGACATTTCAAATGGGTGAAACCGGTGAAGTCCCAGCTCCCGTTTCGACTTCAGAGAAACCAAAAAGACAAGCGAGCTCCAGTAACTTGCAGAGGAAGTTTTCAGCGGATGAAGGACAGTCTACCCCGgagaacaacaacagcaggacTCTGAGACGGTCACTGCGAAGAGGAAGCTCCTTCAGCTTCATCACCCCCGGGCCACAATGGGACTTCAGTCTGAAACGGAAACGCAGAGAGAAGGATGACAGCGACGCAGTCAGCCTCTGCAGCTTCGACTTTAAGGAACCCAGCACAAAGCGGGTCCGTCCTCTCGGCAGGGTGACGTCGCTAGCCAACCTCATCTCTCCGGTGAAGAATGGGGCCGTCCGGCGCTTCGGCCAAACCATCCAGGCCTCTTTCCGGGGCGATGGCAAGTCGCCGGGCGCGCCCCATAAGCCTTGCAGCAAGGCGGCGGCCCCCACACCGCCCAAAAGGAGGAACAGCATGCTGTGGTCAGAGACGCTAGACGTCCACCAGAAGGGAACTTTCTCTACCAAAGAAATCAAGCGGCAGGAGGCCATATTTGAGCTGTATCGTGGAGAACAGGACCTGATTGAGGACCTCCAGCTCGCACGCAAGGCGTACCACGACCCGATGCTGAAGCTCTCCATTATGTCAGAGGAGGAGCTCACGCACATCTTCGGCAACCTGGACGCCTACATCCCTCTGCACGAGGACCTCCTGGCGCAGCTCACCAAAGCCACGGCGCCAGACGGGACTGTGGGCCGGATCGGACAGATTGTCGTAGACTGGCTGCCAAGGCTCAACGCCTACAAGAACTACTGCAGCAACCAGCTGGCAGCCAAGGCGCTGCTGGACCAGAAGAAGCAGGACCCGCGCGTGCAGGACTTCCTGCAGCGCTGCCTCGAGTCGCCCTTCAGCAGGAAGCTGGACCTGTGGAGCTTCCTGGACATCCCGCGCTCGCGCCTGGTCAAGTACCCGCTCCTGCTCAAAGAGATCCTGAGACACACCGCGGCAGAGCACCCGGACGCCGCCAGCCTGGAGGAAGCGatcaCCATCATGCAGGGCGTGCTGTCTGACATCAACATGAAGAAGGGAGAGTCCGAGTGCCAGTACTACATCGACAAGTTGGAGTATCTGGACGACAAGCAGAGAGACCCTCTGATCGAGCAGTGCAAGAGCCTGCTGTGTCATGGCGAGCTGCGGAACAAGAGCGGCACGAAGCTGCATGTGTTCCTGTTCACCGAGCTGCTGGTCCTGACCCGCCCCGTCACCAGGAACGAGCGCCAGTGTTTCCAGGTGTACCGGCAGCCAATCCCAGTGCACGATCTCCTGTTGGACGACCTGCAGGATGGAGACGTCAGAATGGGCGGATCCTTCAGAGGTGCTTTCAGCAACGCAGACAAAGCCAAGAACATTTTCCGCGTGCGTTCCCAAGACCCGAGCCAGGCGCAGTCCCACACCCTGCAGGTCAACGACGTCTTCCACAAGCAGCAGTGGCTGAACTGCCTCCGCAGCGCCATCTCCGTCCACCGGCCGCTCGGCGAGCCCTCGGCGCCGGCCCCCCCGCCGGCGAGCGACGCCCGCTCCAAGCGCCGCCCGTCCTCCATCTCCGCCATCGTCCACATGGAGGAGGCGGATGAGAACTGCCTGCGGCCGACCTCTCAGTCCGCCCCCAGCACGCCGTGCAACAGCGCGGCGCCCAGCCCCACCACAAAGTCCTCCCTATCCCGCTCCTCCTCGTCAGCTTCGTCGTCGTCCTCTTCGACGTCGCCGCTCTCCTCGCTCACATCGCACAAAACCAAAAAGGACAAGAAGTCTCTGTGCTCTTTAGGGAAGAGAAAAGAGACTATGGTGTGAAGTGAGGTGAAAAGGAGAAAAATGGACTCCTGGgtggacatttttgtaaaaaggaaacacaacgTGGAGAAGCGTGGTacttgtatttatgtgtgtctgcgtgcgtgcgtattATTAAAACAGTGTTCTGTGTTACTGTC
>XM_039792026.1
GACTTCAGAGAAACCAAAAAGACAAGCGAGCTCCAGTAACTTGCAGAGGAAGTTTTCAGCGGATGAAGGACAGTCTACCCCGgagaacaacaacagcaggacTCTGAGACGGGAGGATCCCTATCGGTCAGTCCTGGTCTGAGTTGGGAGGTCAGCGCTGCATCATGCTGAGGCTGTGGTCACTGCGAAGAGGAAGCTCCTTCAGCTTCATCACCCCCGGGCCACAATGGGACTTCAGTCTGAAACGGAAACGCAGAGAGAAGGATGACAGCGACGCAGTCAGCCTCTGCAGCTTCGACTTTAAGGAACCCAGCACAAAGCGGGTCCGTCCTCTCGGCAGGGTGACGTCGCTAGCCAACCTCATCTCTCCGGTGAAGAATGGGGCCGTCCGGCGCTTCGGCCAAACCATCCAGGCCTCTTTCCGGGGCGATGGCAAGTCGCCGGGCGCGCCCCATAAGCCTTGCAGCAAGGCGGCGGCCCCCACACCGCCCAAAAGGAGGAACAGCATGCTGTGGTCAGAGACGCTAGACGTCCACCAGAAGGGAACTTTCTCTACCAAAGAAATCAAGCGGCAGGAGGCCATATTTGAGCTGTATCGTGGAGAACAGGACCTGATTGAGGACCTCCAGCTCGCACGCAAGGCGTACCACGACCCGATGCTGAAGCTCTCCATTATGTCAGAGGAGGAGCTCACGCACATCTTCGGCAACCTGGACGCCTACATCCCTCTGCACGAGGACCTCCTGGCGCAGCTCACCAAAGCCACGGCGCCAGACGGGACTGTGGGCCGGATCGGACAGATTGTCGTAGACTGGCTGCCAAGGCTCAACGCCTACAAGAACTACTGCAGCAACCAGCTGGCAGCCAAGGCGCTGCTGGACCAGAAGAAGCAGGACCCGCGCGTGCAGGACTTCCTGCAGCGCTGCCTCGAGTCGCCCTTCAGCAGGAAGCTGGACCTGTGGAGCTTCCTGGACATCCCGCGCTCGCGCCTGGTCAAGTACCCGCTCCTGCTCAAAGAGATCCTGAGACACACCGCGGCAGAGCACCCGGACGCCGCCAGCCTGGAGGAAGCGatcaCCATCATGCAGGGCGTGCTGTCTGACATCAACATGAAGAAGGGAGAGTCCGAGTGCCAGTACTACATCGACAAGTTGGAGTATCTGGACGACAAGCAGAGAGACCCTCTGATCGAGCAGTGCAAGAGCCTGCTGTGTCATGGCGAGCTGCGGAACAAGAGCGGCACGAAGCTGCATGTGTTCCTGTTCACCGAGCTGCTGGTCCTGACCCGCCCCGTCACCAGGAACGAGCGCCAGTGTTTCCAGGTGTACCGGCAGCCAATCCCAGTGCACGATCTCCTGTTGGACGACCTGCAGGATGGAGACGTCAGAATGGGCGGATCCTTCAGAGGTGCTTTCAGCAACGCAGACAAAGCCAAGAACATTTTCCGCGTGCGTTCCCAAGACCCGAGCCAGGCGCAGTCCCACACCCTGCAGGTCAACGACGTCTTCCACAAGCAGCAGTGGCTGAACTGCCTCCGCAGCGCCATCTCCGTCCACCGGCCGCTCGGCGAGCCCTCGGCGCCGGCCCCCCCGCCGGCGAGCGACGCCCGCTCCAAGCGCCGCCCGTCCTCCATCTCCGCCATCGTCCACATGGAGGAGGCGGATGAGAACTGCCTGCGGCCGACCTCTCAGTCCGCCCCCAGCACGCCGTGCAACAGCGCGGCGCCCAGCCCCACCACAAAGTCCTCCCTATCCCGCTCCTCCTCGTCAGCTTCGTCGTCGTCCTCTTCGACGTCGCCGCTCTCCTCGCTCACATCGCACAAAACCAAAAAGGACAAGAAGTCTCTGTGCTCTTTAGGGAAGAGAAAAGAGACTATGGTGTGAAGTGAGGTGAAAAGGAGAAAAATGGACTCCTGGgtggacatttttgtaaaaaggaaacacaacgTGGAGAAGCGTGGTacttgtatttatgtgtgtctgcgtgcgtgcgtattATTAAAACAGTGTTCTGTGTTACTGTC
>XM_039792028.1
ACCAAAGTTTAGAAAGTCTGTGTGAGAGGAGCTTTTCAGAGAGCCCTGGCCCATGAGGGGAAGGAGGatttatttaagtttttattgCTAACGCAACCCTTGATTTTCATCGACTTCGTTTTCTCTGATGTGGATTACTTGAAGCCAACACGCCaggattaaagaaaaaaaaaaggatattgcGTTTTTATTGAAAGCTATGGTGGCTTACGATGAACTGGGTAgcctggtgcctatcaaacggACTCTGCAAGTCATAGACTACCAGAACCAAGCCAACAAGGAGTCAGAGGAACCCAGCACAAAGCGGGTCCGTCCTCTCGGCAGGGTGACGTCGCTAGCCAACCTCATCTCTCCGGTGAAGAATGGGGCCGTCCGGCGCTTCGGCCAAACCATCCAGGCCTCTTTCCGGGGCGATGGCAAGTCGCCGGGCGCGCCCCATAAGCCTTGCAGCAAGGCGGCGGCCCCCACACCGCCCAAAAGGAGGAACAGCATGCTGTGGTCAGAGACGCTAGACGTCCACCAGAAGGGAACTTTCTCTACCAAAGAAATCAAGCGGCAGGAGGCCATATTTGAGCTGTATCGTGGAGAACAGGACCTGATTGAGGACCTCCAGCTCGCACGCAAGGCGTACCACGACCCGATGCTGAAGCTCTCCATTATGTCAGAGGAGGAGCTCACGCACATCTTCGGCAACCTGGACGCCTACATCCCTCTGCACGAGGACCTCCTGGCGCAGCTCACCAAAGCCACGGCGCCAGACGGGACTGTGGGCCGGATCGGACAGATTGTCGTAGACTGGCTGCCAAGGCTCAACGCCTACAAGAACTACTGCAGCAACCAGCTGGCAGCCAAGGCGCTGCTGGACCAGAAGAAGCAGGACCCGCGCGTGCAGGACTTCCTGCAGCGCTGCCTCGAGTCGCCCTTCAGCAGGAAGCTGGACCTGTGGAGCTTCCTGGACATCCCGCGCTCGCGCCTGGTCAAGTACCCGCTCCTGCTCAAAGAGATCCTGAGACACACCGCGGCAGAGCACCCGGACGCCGCCAGCCTGGAGGAAGCGatcaCCATCATGCAGGGCGTGCTGTCTGACATCAACATGAAGAAGGGAGAGTCCGAGTGCCAGTACTACATCGACAAGTTGGAGTATCTGGACGACAAGCAGAGAGACCCTCTGATCGAGCAGTGCAAGAGCCTGCTGTGTCATGGCGAGCTGCGGAACAAGAGCGGCACGAAGCTGCATGTGTTCCTGTTCACCGAGCTGCTGGTCCTGACCCGCCCCGTCACCAGGAACGAGCGCCAGTGTTTCCAGGTGTACCGGCAGCCAATCCCAGTGCACGATCTCCTGTTGGACGACCTGCAGGATGGAGACGTCAGAATGGGCGGATCCTTCAGAGGTGCTTTCAGCAACGCAGACAAAGCCAAGAACATTTTCCGCGTGCGTTCCCAAGACCCGAGCCAGGCGCAGTCCCACACCCTGCAGGTCAACGACGTCTTCCACAAGCAGCAGTGGCTGAACTGCCTCCGCAGCGCCATCTCCGTCCACCGGCCGCTCGGCGAGCCCTCGGCGCCGGCCCCCCCGCCGGCGAGCGACGCCCGCTCCAAGCGCCGCCCGTCCTCCATCTCCGCCATCGTCCACATGGAGGAGGCGGATGAGAACTGCCTGCGGCCGACCTCTCAGTCCGCCCCCAGCACGCCGTGCAACAGCGCGGCGCCCAGCCCCACCACAAAGTCCTCCCTATCCCGCTCCTCCTCGTCAGCTTCGTCGTCGTCCTCTTCGACGTCGCCGCTCTCCTCGCTCACATCGCACAAAACCAAAAAGGACAAGAAGTCTCTGTGCTCTTTAGGGAAGAGAAAAGAGACTATGGTGTGAAGTGAGGTGAAAAGGAGAAAAATGGACTCCTGGgtggacatttttgtaaaaaggaaacacaacgTGGAGAAGCGTGGTacttgtatttatgtgtgtctgcgtgcgtgcgtattATTAAAACAGTGTTCTGTGTTACTGTC

Function

symbol description
net1 Enables transcription coactivator activity. Acts upstream of or within dorsal/ventral axis specification; mesendoderm development; and regulation of nodal signaling pathway. Located in nucleus. Is expressed in axial mesoderm; margin; and shield. Orthologous to human NET1 (neuroepithelial cell transforming 1).

NR:

description
PREDICTED: neuroepithelial cell-transforming gene 1 protein isoform X1

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process

KEGG:

id description
K20683 ARHGEF3_8; Rho guanine nucleotide exchange factor 3/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792024.1 True 2198 mRNA 0.58 12 24066409 24109573
XM_039792025.1 False 2089 mRNA 0.58 11 24066409 24109572
XM_039792026.1 False 2023 mRNA 0.59 12 24066409 24109439
XM_039792028.1 False 2010 mRNA 0.58 9 24066409 24072805

Neighbor

gene id symbol gene type direction distance location
glt8d2 glt8d2 coding downstream 180817 23868156 ~ 23885592 (-)
sbf1 sbf1 coding downstream 257063 23718339 ~ 23809346 (-)
cbll1 cbll1 coding downstream 382341 23677168 ~ 23684068 (-)
slc26a5 NA coding downstream 449333 23594352 ~ 23617076 (-)
dnajc2 dnajc2 coding downstream 477649 23562160 ~ 23588760 (-)
podxl podxl coding upstream 147210 24256783 ~ 24284709 (-)
LOC120553465 nfyb coding upstream 255765 24365338 ~ 24375224 (-)
slc41a2b LOC103365955,LOC104923736,LOC106530824 coding upstream 399203 24508776 ~ 24565806 (-)
trnap-agg_20 NA coding upstream 467377 24576950 ~ 24577021 (-)
LOC120553455 NA coding upstream 681919 24791492 ~ 24797223 (-)
G229952 NA non-coding downstream 117629 23946497 ~ 23948780 (-)
G229909 NA non-coding downstream 352732 23713456 ~ 23713677 (-)
G229908 NA non-coding downstream 359212 23702704 ~ 23707197 (-)
LOC120553168 NA non-coding downstream 424905 23623580 ~ 23641504 (-)
G229872 pmpcb non-coding downstream 506067 23538248 ~ 23560342 (-)
LOC120553435 NA non-coding upstream 8159 24117732 ~ 24202125 (-)
G230067 NA non-coding upstream 94457 24204030 ~ 24225411 (-)
G230089 NA non-coding upstream 205510 24315083 ~ 24315857 (-)
G230118 NA non-coding upstream 369521 24479094 ~ 24479656 (-)
G230119 NA non-coding upstream 370134 24479707 ~ 24481679 (-)
G229950 gdi2,LOC100708443,LOC102215003 other downstream 151717 23908556 ~ 23914692 (-)
LOC120553046 NA other downstream 202435 23858219 ~ 23863974 (-)
LOC120553170 NA other downstream 354605 23690519 ~ 23711804 (-)
G229907 NA other downstream 366211 23699697 ~ 23700198 (-)
G229716 NA other downstream 826836 23104760 ~ 23239573 (-)
sult4a1 sult4a1,LOC102784496 other upstream 1081688 25191261 ~ 25217693 (-)
LOC120553115 NA other upstream 1486005 25595578 ~ 25601380 (-)
mkrn1 mkrn1 other upstream 2061747 26171320 ~ 26196510 (-)
G230594 mrps33 other upstream 2266119 26375692 ~ 26381365 (-)
G230730 NA other upstream 3007633 27117206 ~ 27118597 (-)

Expression


Co-expression Network