slc5a8 (slc5a8)


Basic Information

Item Value
gene id slc5a8
gene name slc5a8
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19355872 ~ 19362110 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792053.1
GTGCTGGGGCTTGACTTGTTCAGAGATTTTGACTGGACAATCTATACTGACCCCAACTCACGTCGTGACCCCAACAGGCGTCGTGGCCCCATCTGCAGCTTCTTCTacaatacagtatgtgcagACATAGAAGGGTTGGTGTATgtttCGGTCTGTGGTCCTGCTCTCAGCTCAGTGTTGAGTGAGACGGTGATGTCTCAGGACTTCCATTCATCCATAGATGATATGGTTTTCCACTTCGAGTGCAAAACACGTGGAGCAGTTTGAACAACTTTCTGAAAAGTTTTACTAGTTTGGGTCTGACTTCCACCAAAATGTCAGGGCACTCCCTGGTCGCTGGCTCCTTCGTGGTAGCAGACTATGTGGTGTTTGCTGTCATGCTTCTGGTGTCGGCTGCCGTCGGGGTCTACTACGCCTGGGTGGACAGGGGCCAGCGAAGCTGGGACTTCCTAACGGGGGGTCGAAGACTGACTGCCCTGCCTGTCTCCCTGTCCCTGACCGCCAGCTTCATGTCAGCCATCACAGTGCTGTCCAACCCAGCCGAGGTATACCGCTACGGAGCCAATATAGGATTTTATGGTCTGGCCTATGTCATGACGATGGTGGTCACATCTGAGATCTTTCTCCCAGTCTTTTACAGGCTGGCCATCACCAGCACGTATGAGTATTTGGAGCTGCGTTTCAGCAGAGCGACCCGTCTGCTGGGAACTGTGCTCTTCATTGTTCAGACAATCCTCTACACTGGAATCGTCATTTATGCCCCAGCTCTTGCTTTAAACCAAGTCACTGGGATGGATCTGTGGGGTGCAGTTATTTCCACAGGCGTGGTCTGTACCTTTTACTGCACAATGGGCGGTCTGAAGGCGGTGGTGTGGACAGATGTGTTTCAGCTTGGCGTCATGCTTGCAGGCTTCCTGTCTGTCATCATCAGGTCCGTGGTCGTTCAAGGTGGAGTCCTCCCCATCATTTCGGATTCAAAACAGGGAGGGAGACTCAACTTTTGGGACTTTGACACAAACCCTCTGAGAAGACACACTTTTTGGACCATAACCATTGGAGGGACATTTGTCTGGGTCAGTATCTATGGGATCAACCAGGCCCAGGTTCAGAGATACATCTCCTGCAAGAGCATCACTCATGCCAGACTATCTCTGTACATCAATCTGCTCGGCTTGTGGTCCATCTTGCTTTGCTCAGTGTTTGCGGGAATGGGCCTCTTCTCAGTCTATAAGAACTGCGACCCATGGACAGCTGGGTGGGTTACTGCTCCTGACCAGTTGATGCCCTATTTGGTGATGGACATCCTGGGAGACTATCCTGGACTTCCTGGACtgtttgttgctgctgcatATAGTGGATCTCTCAGCACAGTGTCATCCAGCATCAACGCACTGTCTGCAGTGACAGTGGAGGACCTGATCAAACCTTACACTAACATATCTGAGAAACATATGTCCTGGATCGCAAAAGGACTGAGTCTCATATATGGGGTTTTATGCATTGGAATGGCTGGACTGGCTTCACTCATGGGAGGCATCTTGCAGGCAGTCATCAGTATATTTGGCATCATTGGAGGTCCTTTACTTGGTGTGTTTACGTTGGGTATCCTCTGTCCATTTGCCAACTCCAAAGGAGCATTGTCAGGTCTCGTGTCGGGGTTGGTAGTGGCTCTGTGGGTGGGCATCGGAGCCCAGATataccccccaccccctgagATGAGCCGACCTCTGTCACTGACCACTGAGGGCTGTAACTTCACTACAACAGACAGCCTCAACTGGACCTCCACTGCTCTACCAACACAGCCAGCCTCCATCAGCACAGCCCCGGTACACATCATTGATGGCAAGCCTCTGCTGGCAGATAACTGGTACTCTCTGTCCTACCTTTACTTCAGTCCTATTGGAACCATCATAGCTATCAGCGTGGGCCTGTTAGTCAGCCTGTTTACAGGAGGCTGGAAGCTGAAGGTGGAATCAAAGCTTACATTAATGAAAGAAGACACAACACTTTATCACCTGTTCCAGTTGTGTAAAGACAGAgtCTTGAGACGAACAGGAAAGCTTGACCTGACaagagacagaggggagagaACTGGCAGCACTAATCCTGCTTTCTGTGACGTAGAGCTGAACTCAACAAAAAACAGCATTACCTCATGAAATGCAAC

Function

symbol description
slc5a8 Predicted to enable organic acid:sodium symporter activity. Predicted to be involved in propanoate transport; short-chain fatty acid import; and sodium ion transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC5A8 (solute carrier family 5 member 8).

NR:

description
PREDICTED: sodium-coupled monocarboxylate transporter 1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14388 SLC5A8_12, SMCT; solute carrier family 5 (sodium-coupled monocarboxylate transporter), member 8/12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792053.1 True 2170 mRNA 0.51 19 19355872 19362110

Neighbor

gene id symbol gene type direction distance location
dnai7 NA coding downstream 2381 19346318 ~ 19353491 (-)
bcat1 NA coding downstream 46188 19297922 ~ 19309684 (-)
LOC120553632 abcd2 coding downstream 624206 18711014 ~ 18731666 (-)
LOC120553351 NA coding downstream 650635 18667121 ~ 18705237 (-)
LOC120553458 cpne8,LOC104935575,LOC103365370,LOC101074159 coding downstream 703182 18561096 ~ 18652690 (-)
arl1 arl1 coding upstream 34746 19396856 ~ 19407358 (-)
LOC120553005 NA coding upstream 56131 19418241 ~ 19428429 (-)
trnal-cag_18 NA coding upstream 76407 19438517 ~ 19438599 (-)
trnal-cag_19 NA coding upstream 81122 19443232 ~ 19443314 (-)
trnal-cag_20 NA coding upstream 84911 19447021 ~ 19447103 (-)
G228826 NA non-coding downstream 19844 19332641 ~ 19336028 (-)
G228824 NA non-coding downstream 27529 19326621 ~ 19328343 (-)
G228759 NA non-coding downstream 333630 19014655 ~ 19022242 (-)
G228731 NA non-coding downstream 380052 18893640 ~ 18975820 (-)
G228713 NA non-coding downstream 471797 18881161 ~ 18884075 (-)
G228834 NA non-coding upstream 1062 19363172 ~ 19363381 (-)
G228835 NA non-coding upstream 2046 19364156 ~ 19364416 (-)
G228836 NA non-coding upstream 3014 19365124 ~ 19365528 (-)
G228838 NA non-coding upstream 12094 19374204 ~ 19375361 (-)
G228839 NA non-coding upstream 13349 19375459 ~ 19375795 (-)
sox5 sox5 other downstream 85536 19028609 ~ 19270336 (-)
LOC120553633 slc2a13,LOC103369283 other downstream 532782 18738396 ~ 18823090 (-)
gramd4a gramd4,LOC103376144 other downstream 934465 18363259 ~ 18421407 (-)
tafa5a fam19a5,LOC103356475,LOC102793695 other downstream 1254877 17830616 ~ 18100995 (-)
G228465 NA other downstream 2053674 17295122 ~ 17302198 (-)
G228934 fam19a2,LOC103364248 other upstream 370992 19733102 ~ 19807098 (-)
etv6 etv6 other upstream 444704 19806814 ~ 19839350 (-)
rerg rerg other upstream 704785 20066895 ~ 20122393 (-)
cdk17 LOC104930593 other upstream 938982 20301092 ~ 20354627 (-)
G229199 NA other upstream 1595547 20957657 ~ 20958220 (-)

Expression


Co-expression Network