LOC120553565


Basic Information

Item Value
gene id LOC120553565
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 3110841 ~ 3117640 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792103.1
AAAACCATCTCCCTCCCGGTCTCTCCTCACTTCTCCGCTGCAGTCGGATCTTCATCACCGTTAAGAACAATACTAGTGTTGTTTTCCCATCTTTAAACATGCCTCAGGTCAACAGCTGCCTCAAATGGCTCCTAACCATCTTCAACATCCTCTTCGCGaTTGTCGGCATCGTCATCATCACGCTCGGTCTGACTTCTCAGTTCAACTACGTGAACGGAGTCATGAATCTGGACTTGAAGCAATCACACTTCTACATCGTGGGCTCCATCGTCATGGTGATTGCCATCCTGGGAGCCGTTGGCGCCTACAATGAGAGCAAGGCGTGCTTGGTCCTGTTCCTGGTGTGTATGATTCTTGGAAGTATTGCGATGCTCCTCCCTGGAACCTTAATGGCTGTCTTCCGTTCCGAGGCGGCAAGCATGCAGGATAATCCTTATGATGGTCATCTGCCTATGGACCAAGCTTCACCCATTAAGAGACAGGATGTCGAAGAAATGCAGATGgagatgCAGTGCTGCGGTCTGTTCAGTTATGAGGACTGGAAGGGAAACATCCCCGACTCTTGTCTGTGCAGCAAGTTGGATGAGATGGAGGGAAAGTGTCAGACAGTCGACTACGGACAGAAGTCTGTCTACAGCAAGGCCTGCTTCCCCATCATCTTCTCCGGGATCATGCAGCTCTATGACAGCGTCATGGCGAGCTTCTTAACTCTGGCTGTCCTGGGGCTCCTGGGCATGGTCCTGTCCTCCGTCATGATCCACCAGCTGCGTTCCCCCAACAGACCCGTTTTCCTGATGACGGCGCCACCCTTCACCAAATCTCCCCAATACGAGGAGCTTCACAACGTTCTTCCTCCAAAGTACTACTAGAGGACCACCGGCTTCCCTCAGACTCGCTGTTAAAGGTCAGGAAGTCCAGCTGTTTGTCCCAGTGTCCAAAGTGCCTAAACGTCCAATGAGGAGTCCCGGCTGTCGGCTCCATCCAGATCAAACGCAAAgcagctttttctttttaagatttattttgggcattttagtaAATTGAGATCTTTGTTTTTATCTGCAGCAACATTATTATTCATTTCGAATGAATGTGATGGGTGTGTGCTTATTGAACGCTTATGTTTTGTACAAATACAACCAGAGAGGGTTGGGTTTGTGGAtgatagaatggttatatagggtatttcacgcTGTTCCTAacagggtatgtaacattggttgggctgaaaatgtctcttttgctgttttttttttttttttattgttttttggcCCTAATGGGACTGGACtgaaacaagagcttttctgccttatatggtctgctcatgaatatttagatgagctgtacactgattggttgagcttagcacacacacacacacacgttccccTCTGTGCCCATGTGATGCGacctagatttagaagactatctgacctcagatcagttagtggcctagtatgtacattttggggcgttacaaagatagaaggtagagccaaatgaggaggagttgAGAAGttaacttttagctttgttcagattGGCCTGTTTTCAACAGCAGTTCCAAATtatgagatttgcagaggaaagaggtgtcaatgggatttagaggttctctGTATGTCCtatatttaccctccaaacttcatttttcaactatgacaaggtagtcggttttgcattctatcgcCCCTTTTTAACGTTTTTCTGTCACTGTTCTTCTGATAATCACAAGCTTATTAGTTCTCAAGAAAATGGTCTCGTTGCTtgaattcagactttttttttctaaggaATTTAGTACCGAAAAATGCTCTTCTGAATAAACGCACAACAGTTTTTCACCAGCAACACAATCTAGCCAAGATGTAGATGTAAGGATGATTTCAGGGtggtttctggttaaacaaaaaggatctgaTCTATAACAGAAAGCTCTATCTCTGCAGGGATCCTTTCCTTAATGTAATTGGGGGTGGGGGACATTAGGTGGGGAGGTCTGGGGCCTTCCTGACCTTGACCCCGGTCCTACAAGACTGGACCAAGACGCTGCCCTGGAATCACATCTGGTTGGTCGGGCTGCAAATGAAATGacggataatttttttttctacaaattgTTACTGTATAATTTTTGTGTATTGTTATACTGCATACttaacagtatatatatttttttaaagatttcttactgtcctttctgttttttattctttatatgcTCTCAAATATGTTGTACTATTGGCCAATAAAGACATTCTCAAAAATGTTGTACCAATGTACATGCAGACCTGTGTTAGAAGGTTTTTcatactttgtttacattgtgaaTCCTGCTTACTGTAAGTGGGTCCAATCACACCACTACTCAGGGTTTCCTGACAAGGTTTGATGCTGAACATTATCTCCTTTCTGTATGATGATGTGGTTCAGGGTTCTGGATATATTTTACACTGTACTTAAAagtctgattttatttttagttgcTCTGTATGGCTGGCACCTActgcagaattgacaataaagtcgccttgacttga
>XM_039792104.1
AAAACCATCTCCCTCCCGGTCTCTCCTCACTTCTCCGCTGCAGTCGGATCTTCATCACCGTTAAGAACAATACTAGTGTTGTTTTCCCATCTTTAAACATGCCTCAGGTCAACAGCTGCCTCAAATGGCTCCTAACCATCTTCAACATCCTCTTCGCGaTTGTCGGCATCGTCATCATCACGCTCGGTCTGACTTCTCAGTTCAACTACGTGAACGGAGTCATGAATCTGGACTTGAAGCAATCACACTTCTACATCGTGGGCTCCATCGTCATGGTGATTGCCATCCTGGGAGCCGTTGGCGCCTACAATGAGAGCAAGGCGTGCTTGGTCCTGTTCCTGGTGTGTATGATTCTTGGAAGTATTGCGATGCTCCTCCCTGGAACCTTAATGGCTGTCTTCCGTTCCGAGGCGGCAAGCATGCAGGATAATCCTTATGATGGTCATCTGCCTATGGACCAAGCTTCACCCATTAAGAGACAGGATGTCGAAGAAATGCAGATGgagatgCAGTGCTGCGGTCTGTTCAGTTATGAGGACTGGAAGGGAAACATCCCCGACTCTTGTCTGTGCAGCAAGTTGGATGAGATGGAGGGAAAGTGTCAGACAGTCGACTACGGAAAGTCTGTCTACAGCAAGGCCTGCTTCCCCATCATCTTCTCCGGGATCATGCAGCTCTATGACAGCGTCATGGCGAGCTTCTTAACTCTGGCTGTCCTGGGGCTCCTGGGCATGGTCCTGTCCTCCGTCATGATCCACCAGCTGCGTTCCCCCAACAGACCCGTTTTCCTGATGACGGCGCCACCCTTCACCAAATCTCCCCAATACGAGGAGCTTCACAACGTTCTTCCTCCAAAGTACTACTAGAGGACCACCGGCTTCCCTCAGACTCGCTGTTAAAGGTCAGGAAGTCCAGCTGTTTGTCCCAGTGTCCAAAGTGCCTAAACGTCCAATGAGGAGTCCCGGCTGTCGGCTCCATCCAGATCAAACGCAAAgcagctttttctttttaagatttattttgggcattttagtaAATTGAGATCTTTGTTTTTATCTGCAGCAACATTATTATTCATTTCGAATGAATGTGATGGGTGTGTGCTTATTGAACGCTTATGTTTTGTACAAATACAACCAGAGAGGGTTGGGTTTGTGGAtgatagaatggttatatagggtatttcacgcTGTTCCTAacagggtatgtaacattggttgggctgaaaatgtctcttttgctgttttttttttttttttattgttttttggcCCTAATGGGACTGGACtgaaacaagagcttttctgccttatatggtctgctcatgaatatttagatgagctgtacactgattggttgagcttagcacacacacacacacacgttccccTCTGTGCCCATGTGATGCGacctagatttagaagactatctgacctcagatcagttagtggcctagtatgtacattttggggcgttacaaagatagaaggtagagccaaatgaggaggagttgAGAAGttaacttttagctttgttcagattGGCCTGTTTTCAACAGCAGTTCCAAATtatgagatttgcagaggaaagaggtgtcaatgggatttagaggttctctGTATGTCCtatatttaccctccaaacttcatttttcaactatgacaaggtagtcggttttgcattctatcgcCCCTTTTTAACGTTTTTCTGTCACTGTTCTTCTGATAATCACAAGCTTATTAGTTCTCAAGAAAATGGTCTCGTTGCTtgaattcagactttttttttctaaggaATTTAGTACCGAAAAATGCTCTTCTGAATAAACGCACAACAGTTTTTCACCAGCAACACAATCTAGCCAAGATGTAGATGTAAGGATGATTTCAGGGtggtttctggttaaacaaaaaggatctgaTCTATAACAGAAAGCTCTATCTCTGCAGGGATCCTTTCCTTAATGTAATTGGGGGTGGGGGACATTAGGTGGGGAGGTCTGGGGCCTTCCTGACCTTGACCCCGGTCCTACAAGACTGGACCAAGACGCTGCCCTGGAATCACATCTGGTTGGTCGGGCTGCAAATGAAATGacggataatttttttttctacaaattgTTACTGTATAATTTTTGTGTATTGTTATACTGCATACttaacagtatatatatttttttaaagatttcttactgtcctttctgttttttattctttatatgcTCTCAAATATGTTGTACTATTGGCCAATAAAGACATTCTCAAAAATGTTGTACCAATGTACATGCAGACCTGTGTTAGAAGGTTTTTcatactttgtttacattgtgaaTCCTGCTTACTGTAAGTGGGTCCAATCACACCACTACTCAGGGTTTCCTGACAAGGTTTGATGCTGAACATTATCTCCTTTCTGTATGATGATGTGGTTCAGGGTTCTGGATATATTTTACACTGTACTTAAAagtctgattttatttttagttgcTCTGTATGGCTGGCACCTActgcagaattgacaataaagtcgccttgacttga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792103.1 True 2543 mRNA 0.43 9 3110841 3117640
XM_039792104.1 False 2540 mRNA 0.43 9 3110841 3117640

Neighbor

gene id symbol gene type direction distance location
trnat-ugu_32 NA coding upstream 178112 2932657 ~ 2932729 (+)
trnat-ugu_31 NA coding upstream 186646 2924123 ~ 2924195 (+)
trnat-ugu_30 NA coding upstream 188275 2922494 ~ 2922566 (+)
trnat-ugu_29 NA coding upstream 188939 2921830 ~ 2921902 (+)
trnat-ugu_28 NA coding upstream 189976 2920793 ~ 2920865 (+)
LOC120553725 NA coding downstream 143039 3260679 ~ 3302750 (+)
cct2 cct2 coding downstream 211310 3328950 ~ 3347986 (+)
LOC120553119 LOC104957567 coding downstream 429099 3546739 ~ 3567593 (+)
cand1 cand1 coding downstream 618842 3736482 ~ 3800595 (+)
mdm1 NA coding downstream 724356 3841996 ~ 3873319 (+)
LOC120553060 NA non-coding upstream 3213 3104725 ~ 3107628 (+)
G225467 NA non-coding upstream 37273 3072934 ~ 3073568 (+)
G225466 NA non-coding upstream 41531 3060053 ~ 3069310 (+)
G225460 NA non-coding upstream 59209 3048148 ~ 3051632 (+)
G225432 NA non-coding upstream 146810 2963389 ~ 2964031 (+)
G225474 NA non-coding downstream 55377 3173017 ~ 3192309 (+)
G225475 NA non-coding downstream 58272 3175912 ~ 3195624 (+)
G225481 NA non-coding downstream 110036 3227676 ~ 3228033 (+)
G225448 NA non-coding downstream 128727 3246367 ~ 3249323 (+)
G225447 NA non-coding downstream 132402 3250042 ~ 3252294 (+)
G225394 NA other upstream 260245 2850153 ~ 2850596 (+)
G225344 NA other upstream 347255 2740384 ~ 2763586 (+)
G224811 LOC106958509,LOC107690788,LOC107671222,LOC107574171,LOC107579420 other upstream 447707 2642536 ~ 2663134 (+)
kcna1b LOC107101449,LOC101167438,LOC104943874,LOC101481979,LOC102202784,LOC103382518 other upstream 616343 2479638 ~ 2494498 (+)
G224728 NA other upstream 813839 2163643 ~ 2297002 (+)
G225445 NA other downstream 12304 3129944 ~ 3131302 (+)
LOC120553724 lgr5,LOC102312898,LOC102787110 other downstream 58900 3176540 ~ 3246203 (+)
nots LOC104935800 other downstream 235208 3352848 ~ 3377335 (+)
shank3b LOC103368171,LOC102784289,LOC102309694,LOC101473766,LOC102207252,LOC103382509,LOC107374533,LOC103154279 other downstream 302723 3420363 ~ 3506467 (+)
trnat-ugu_33 NA other downstream 392440 3510080 ~ 3510152 (+)

Expression


Co-expression Network