arfgap3 (arfgap3)


Basic Information

Item Value
gene id arfgap3
gene name arfgap3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10226629 ~ 10234656 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792106.1
TCATGATGTTCTCCTATTGACGTGTCGTATtcggaaaaacacacacagggctgTTTTTCATGCTACTTCGCTGTGTAACCACCAGTTATTACCAACAGATAGAACAATGTCAGAGCCCAGCAAGCAGGACATTTCCACTATTTTTAAGCGACTTCGCGCCATCCCTACGAATAAGATTTGCTTTGACTGCTCAGCTAAAAACCCCAGTTGGGCCAGCATCACCTACGGTGTATTCCTGTGTATAGATTGCTCTGGGACACACAGGTCTCTTGGGGTGCATCTGACCTTTATCAGGTCCACTGAGCTGGATTTCAATTGGTCTTGGTTTCAGCTAAGATGTATGCAAGTGGGAGGCAATGCCAGTGCGatgtcatttttcagtcaaCATGGGTGCACGACCAGTGCTGCCAATACCAAGTACAACAGCCGAGCTGCTCAGCTGTACAGGGAGAAGATAAAGACTTCAGCCACGCAAGCCACCAGATCCCATGGCACTGAGTTGTGGCTTGACAGTCAGGCTCCTCTCTCCCCAACATCACCGGACGACAAGCAAGTGGATTTCTTCAGTCTTCATATACAGGCTCTTCCTGAAAATGTGAACACGGCCAACACGGTTCAAATGTGTCTCAGCTCCTCCGCATCAGAGAAGCCTTTAACCAGGGGAAAAGAGGAAGACGGTAATCTAGATGAGGGTCCTAGTGTGGAGATGCTGACTGTTTCTACAGAATCAAATCTAGAGCATTCCTCTCTCCTTAAGAAGAAGCCAACTGCCGCCAAGAAAACCTTGGCCTCTAAGAAAGGCGGTCTGGGCGCTCAGAAGGTTAGCAGTAAGAGTTTCTCAGATCTGGAGAAGAAGGCTCAAGCTGCCGACAAGctcagagagaaagaagagaacacTGGTGCTTCCAAGAAGAGCAACCAACCTGAGGAATCCATCTCTCCATCCCTACGACTGACCTGTAAAGATTTTGAGCAGCAGAGGAAAATGGAGGAGAAGAAGTTGAAGGGATTAAAGGGGAATAAGAAAGAGCAAGCTGAGAGACTGGGCATGGGTCTGGGCATGAGGAGTGGAGTGTCTCACTCTGTCACATCGGACATGCACATGATCCAGCAGGAgagtccactggggaccaagACCACCAAGGCGCGACGGTTCACCGAGGACAACGATGATGAAGGGTCCTTCAGCTCTAGGATTTTGTCCCGGTTTGAGGATCAAACAGAAACGTCAGATAGTTTCTCCTCGCTGTGGGATGATAGAGGTGAAGGAGGCTGGCTCAAGGAGAGCAAGAAACCAGAGCCGGACTTCTACTTGACCTCCACTATATCATCACTGAATGACAGGCCCACAGCCAGAAGAAAACCAGAAGCAGTGCCAGTATCGGACACAGGAGAAGCTCAGAAAAAGTTTGGAGGCGACGTGAAAGCCATCTCTTCTGACATGTACTTTGGAAAACAAGATAACTCTGAGTATGAGGCCAAAACACGACTGGAAAGGTATTCTGGGAGTGCCTCTATAAGTTCAGCAGACCTCTTTGATGATCCAAAGAAACAGACTGTGAGTTCCTACCGTCTGACCAACGTGCTGCCCAGTGCTCCTGACATGTCACAGCTCAAACTGGGAGTGCGCTCCGTGGCAGGAAAACTCTCCGTCATGGCCAGCGGCGTAGTTAGCTCAATTCAGGTCGGTCAGAAATACACCACTTGAATAACGATCACATAA
>XM_039792107.1
TCATGATGTTCTCCTATTGACGTGTCGTATtcggaaaaacacacacagggctgTTTTTCATGCTACTTCGCTGTGTAACCACCAGTTATTACCAACAGATAGAACAATGTCAGAGCCCAGCAAGCAGGACATTTCCACTATTTTTAAGCGACTTCGCGCCATCCCTACGAATAAGATTTGCTTTGACTGCTCAGCTAAAAACCCCAGTTGGGCCAGCATCACCTACGGTGTATTCCTGTGTATAGATTGCTCTGGGACACACAGGTCTCTTGGGGTGCATCTGACCTTTATCAGGTCCACTGAGCTGGATTTCAATTGGTCTTGGTTTCAGCTAAGATGTATGCAAGTGGGAGGCAATGCCAGTGCGatgtcatttttcagtcaaCATGGGTGCACGACCAGTGCTGCCAATACCAAGTACAACAGCCGAGCTGCTCAGCTGTACAGGGAGAAGATAAAGACTTCAGCCACGCAAGCCACCAGATCCCATGGCACTGAGTTGTGGCTTGACAGTCAGGCTCCTCTCTCCCCAACATCACCGGACGACAAGCAAGTGGATTTCTTCAGTCTTCATATACAGGCTCTTCCTGAAAATGTGAACACGGCCAACACGGTTCAAATGTGTCTCAGCTCCTCCGCATCAGAGAAGCCTTTAACCAGGGGAAAAGAGGAAGACGGTAATCTAGATGAGGGTCCTAGTGTGGAGATGCTGACTGTTTCTACAGAATCAAATCTAGAGCATTCCTCTCTCCTTAAGAAGAAGCCAACTGCCGCCAAGAAAACCTTGGCCTCTAAGAAAGGCGGTCTGGGCGCTCAGAAGGTTAGCAGTAAGAGTTTCTCAGATCTGGAGAAGAAGGCTCAAGCTGCCGACAAGctcagagagaaagaagagaacacTGGTGCTTCCAAGAAGAGCAACCAACCTGAGGAATCCATCTCTCCATCCCTACGACTGACCTGTAAAGATTTTGAGCAGCAGAGGAAAATGGAGGAGAAGAAGTTGAAGGGATTAAAGGGGAATAAGAAAGAGCAAGCTGAGAGACTGGGCATGGGTCTGGGCATGAGGAGTGGAGTGTCTCACTCTGTCACATCGGACATGCACATGATCCAGCAGGAgagtccactggggaccaagACCACCAAGGCGCGACGGTTCACCGAGGACAACGATGATGAAGGGTCCTTCAGCTCTAGGATTTTGTCCCGGTTTGAGGATCAAACAGAAACGTCAGATAGTTTCTCCTCGCTGTGGGATGATAGAGGTGAAGGAGGCTGGCTCAAGGAGAGCAAGAAACCAGAGCCGGACTTCTACTTGACCTCCACTATATCATCACTGAATGACAGGCCCACAGCCAGAAGAAAACCAGAAGCAGTGCCAGTATCGGACACAGGAGAAGCTCAGAAAAAGTTTGGAGGCGACGTGAAAGCCATCTCTTCTGACATGTACTTTGGAAAACAAGATAACTCTGAGTATGAGGCCAAAACACGACTGGAAAGGTATTCTGGGAGTGCCTCTATAAGTTCAGCAGACCTCTTTGATGATCCAAAGAAACAGACTGTGAGTTCCTACCGTCTGACCAACGTGCTGCCCAGTGCTCCTGACATGTCACAGCTCAAACTGGGAGTGCGCTCCGTGGCAGGAAAACTCTCCGTCATGGCCAGCGGCGTAGTTAGCTCAATTCAGGACCACTACAGCTCCTGAGTCATGGTGTGTGGCTTCTGTTAGATTCAGCGCCCTCATAGTTGGCCCAATGAGTGGTGGTCACTCATCCTTGGAGCAAAAgagtttattttagtttatttagttaTTGCTTATTTTACTTTGGGGTCTTGgggtttaaatatatatataaaaaaaaaaaagtatatgtaGCAGATGGTTTGTGGTGTTTTGAAGGATGGATTTGCGTTCTGATTTCTTTAGTTGatgatgtgtaaaaaaaaaaaaaaaaacctaaggAGTAGAGAGTACTCAGTTGTAAGTTTTTAATTGGTTAACCTACTCTCACTCATCATGTGCACTCTGTATTGTGCTTTTTTTGCACATTCCCACAGGTTTGAAAGTGTCCTTTCCGTCCCCAAAGTGCACTTATTTTTGCTCTTTCAAAGACGGGACCAAAACCTGATAACGAGGCCTTGGGGGaccagatatatattttttaatcacacatactatcagttatgtagcctcaTTAACACATTAGCTACATTATCTTGTGAATAgttatgtttttctttgtttttgcagGCCATGCATCTGTTATTATAAAAGGACAAGATGGCATGAAATCTATGCAGCTATTAAAAATTGAGTTTGAAGGATATgctcattcactttcttgccagGAATACggtgagaagattgataccactcttatcTGTCGGTTTAATACGAAGCTGTAGCCAGGAGCCGGtttagcatagcttagcataacgACTGGAAACAggagctagcctggctctgtctgtaGGCAACAGTCTGCTTACCAACCAGCGTGATAAAACGTTTGTAACCTTTGGATAGAGCCAGTtagctgcttccagtctttatgctaagcttacTGGTTAGTCCTTTAGCAATCTAGCTGATAGCGTTAGAATAACCCTGCTTGATGTAGGTCAATtgcactgtgtttttttttttttttttttctcatttctgtTGCTTGGAATCAGACACTTTAAGATGTTGTAATTGATAATATGGTCAACATTGTAAGCAGTAGATTATTATTTTGAGGGGTTCCTTTTgatgatgttttgtatttaatttgtaGCTGTTTTTGTACGTCCGCTGTGACATTCTACATTGCCCCCTTTGGTATAACATTTAATAGCCCACACTTGGAAGGCTAGAATTATCTGATGCGGACCTCTTTGTAGCTTTCAGGCCCCATTGTACAGCAACACATGTCCACTTAAAATATGACTGAAAGCAATCCCTTTTTAAAGGCCtcattttgttgttgctgtaacaTACTGCAAAAGtcataataaataaatcgcACTACAATGTGGTGCTATAATGTGATTTTGGATTTGGCATTTAAAAGCAATAGAAAAACAGGCTCTGAGGTGGAATAACCACGGCTTGTGCTTTAGCATTAAGGTCAAATTTGCCATGATGCTTAAAATCTAATTGTGCAGAGTTAACAGACTGGAGTTTTTTAAGCCCTGGTTTGGGAACTGGATGATTATATTACTGAGCAATTTCTGTACTGTAAATGCTTCTCAGGAGTTTGAGTTGTTAAATAAGAAACACTAAAAGTGAAAGTTGTAGATCCTTCAATGACCAAATATTTGTTTACTCCATCACTCTATGCCTTAGTCCAAAGATCTCTGATTAACGCGCCCTCATATTGCAATATTGTGCTGGCTATCTTTTTGCACATTATTTTGTTAGAAATTGCATGTGGCAGCTTTTGcttgaatgtactgtattgCAATTCAACATTTGCCTCTAAGGTGACGTTGCGTCCATGTTAGACTTTAATTTAGTTGATCTTTGTTTGTCTTCTGCTGTTAAATATTGTTAAAGGTTACCTAAAAGAATAGTAGCTTGTGTAATTAGCATGGCCCTTGTAGTTAATAGGACATGCTGAAAAATCCTGAATACAAGATAGCATACTGCCGTTGGGAGCCATTAAATAATAATGGAATAACAGAATTGATCAATAAAAGCTATATTATAGTACTGCTACATACAATGTTGTATAGGGCTTTGAATTACCAGTTATAGAAAGCTACTGATAATCAagttttgacatattttgacaCTCAAAATGGAAGTAAGATTTTTGGAAACACGCCAAATAAATGGCTTGTGCCGAACTCTT

Function

symbol description
arfgap3 Predicted to enable GTPase activator activity. Predicted to be involved in COPI coating of Golgi vesicle. Is expressed in hatching gland and polster. Orthologous to human ARFGAP3 (ADP ribosylation factor GTPase activating protein 3).

NR:

description
PREDICTED: ADP-ribosylation factor GTPase-activating protein 3 isoform X2

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12493 ARFGAP2_3; ADP-ribosylation factor GTPase-activating protein 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792106.1 False 1723 mRNA 0.49 15 10226629 10232447
XM_039792107.1 True 3836 mRNA 0.42 16 10226629 10234656

Neighbor

gene id symbol gene type direction distance location
pacsin2 pacsin2 coding upstream 727 10200774 ~ 10225902 (+)
ttll1 ttll1,LOC102779306 coding upstream 29390 10187418 ~ 10197239 (+)
trnay-gua_59 NA coding upstream 31423 10195120 ~ 10195206 (+)
trnay-gua_58 NA coding upstream 32113 10194430 ~ 10194516 (+)
trnay-gua_57 NA coding upstream 34217 10192326 ~ 10192412 (+)
LOC120553694 ikbip coding downstream 360 10235016 ~ 10241505 (+)
uhrf1bp1l NA coding downstream 15102 10249758 ~ 10284100 (+)
anks1b anks1b coding downstream 53821 10288477 ~ 10522237 (+)
depdc4 depdc4 coding downstream 403932 10638588 ~ 10643771 (+)
scyl2 NA coding downstream 413665 10648321 ~ 10659011 (+)
LOC120553125 NA non-coding upstream 290036 9934175 ~ 9936593 (+)
G226930 LOC104947167 non-coding upstream 358544 9867575 ~ 9868085 (+)
G226921 mtpn non-coding upstream 400104 9796473 ~ 9826525 (+)
G226922 NA non-coding upstream 420027 9806242 ~ 9806602 (+)
G226918 NA non-coding upstream 472513 9751944 ~ 9754116 (+)
G227088 NA non-coding downstream 303540 10538196 ~ 10538689 (+)
G227107 tcp11l2,LOC102777109 non-coding downstream 390790 10625446 ~ 10627982 (+)
G227108 NA non-coding downstream 394152 10628808 ~ 10630212 (+)
G227116 NA non-coding downstream 431053 10665709 ~ 10667280 (+)
G227139 NA non-coding downstream 471254 10705910 ~ 10709545 (+)
ndufb2 ndufb2,LOC102790702 other upstream 985280 9237226 ~ 9241349 (+)
lhfpl3 lhfpl3,LOC101483460 other upstream 1053409 9134594 ~ 9173220 (+)
rps16 rps16,LOC103382554 other upstream 1793932 8426635 ~ 8432697 (+)
LOC120553156 LOC104945813 other upstream 2657326 7566655 ~ 7569303 (+)
LOC120553154 LOC104945813,LOC103356648 other upstream 2694552 7525892 ~ 7532077 (+)
G227121 kera other downstream 462598 10697254 ~ 10699718 (+)
G227141 dcn,LOC103382665 other downstream 497413 10732069 ~ 10737503 (+)
impdh1b LOC104968094,LOC103355171,LOC102293685,LOC102194436,LOC104918784 other downstream 713629 10948285 ~ 10986201 (+)
G227216 NA other downstream 868180 11102836 ~ 11112905 (+)
G227278 LOC104928793 other downstream 1454513 11689169 ~ 11757317 (+)

Expression


Co-expression Network