lin7a (lin7a)


Basic Information

Item Value
gene id lin7a
gene name lin7a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 8475630 ~ 8510314 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792117.1
tttctctctctctctctctatgtgtgtgatGCTGCAGCTCCTGTAGTCTCCAGTCTCCAGTAAACAGCAGTCATGGCGACAGTGGTCCAACCGCTCTCTCTGGATCGAGATGTTGCCAGGGCTATCGAGCTGCTGGAGAAGCTGCAGGAGTCAGGTGACGTGCCTGGTCACAAGCTCCAGTCTCTGAAGAAGGTCCTTCAGAGTGAGTTCTGCACAGCCATCAGAGAGGTGTACCAGTACATGCATGAAACCATCACAGTGAATGGCTGTCCAGAGTACCAGGCCAGGGCCACAGCTAAGGCCACAGTTGCAGCCTTCGCAGCCAGCGAAGGTCACTCCCACCCGCGAGTGGTGGAGCTACCCAAGACCGAGGAAGGGCTGGGCTTCAACGTGATGGGTGGCAAGGAACAGAACTCCCCGATCTACATCTCCCGCATCATCCCTGGAGGCGTGGCTGAGAGGCAGGGCGGCCTAAAGCGAGGGGACCAGCTCCTGTCCGTCAATGGCGTGAGCGTGGAGGGCGAGCACCACGAGAAAGCGGTGGAGCTACTGAAGGCGGCCAAGGACAGTGTTAAGCTGGTGGTTCGCTACACCCCCAAAGTGCTGGAGGAGATGGAAGCTCGCTTTGAGAAGCTGCGTACGGCCCGGCgacgccagcagcagcagatcctcatgcagcagcagcaacagcagcagaacGTGGCCTCTCAGCAGAACCACATGTCGTTGttccaaaaaaagaagaagtgaaGGTGAGCGAAAAGGTGGATCTCAAAGACCATCTGTCTGTTGTTGAGGATCCCAAAGGAATCTCTCCGTCGTGGAGGAAACCAACAAGTAGAAGACTCTTTtacttcctctctcccttccagTGTACCACCGATTACTGAGCAAAAACAAAGAGAGCCGTTTGTCCTGAAATTGGTGCTTTGAAAGACAAGTATGAGGGAGGCTAGCACTAAAAGTTGTCCATTTTAACTTTGTATTCACTTTTATAAGTTGTTCTCCCCCGGTTGTGAGTCTTACTGAAACTCCCTttcttgtgtttgttgttttgtttacagTCATCCATTTTTGATTGTTCACCGACTTCCACTACACCGCGGCACCTTTGCCATTTTGCCATAGATGTCATGTGTACAGTGGTGTTTCTATTAATTCTTCAACAGGTGCTTGTATCTCTGTATGAATGACCatcagtttcttttctttttttgtcaaacttGTCCTGTTTTGGAATAAACGTGGACTCTTTTTTTACCTTCTATATTGTAGCAGGAAAGATTTTGTATCTTGTAGGTTTAGCAATAACACACATCCTTAAGTTTTTTCATTCTTTGACACTAAATTCACAATCggatacatgcatatatacagaGTTTATGGGATATGTGCACATGTAAATCATTGTAAAGTAAAATGGGTCTTATGTACTGTAAGGCAGCTTCTGTGTCCAGTATATCCTCTGTGCCATTTAAAGAGATTATTGATTTACAGGTGGCATGAATAATTATTGTGCAATAACTGTGATTATTACCAGACTTGGTAAGCCACTCCTAACTGAGATTTATCTAGAAAATATACCATGAGACCAAGATGTTACCAAGAAATTTTACCAAAGTTAAAATCAGTCCTCAGAAATGTTATATGTCGTGTTCTCGACAAACAGAATGTCACCAGTTTTTATTCGAACAGAGTGGGAAttaaatcaaaaataatgcTATAATTGTTGTTCAGTCTATTTTATAGTTTATGAGATCATAGATAtatcatttattcattttattgttCCTTTTAAATATTATGTATTCTTTCTAAGATGTGCAGATTATTATTTATTCCTTGTATAACAGCTGAATATTAGCACATAGTTCATGTAGATCCTGGTTTCTGTTTTGACAATCATTTTGAGAAGTTATTACGAGACTGAGTGGAATGTTTCACTTCCTGTTATCCTCCGTACCTGTAACGGAAATGTTGATAAAAGTGATTATTACTTTTCTATCGTCTCCATCTTTGGTGCTAAGCGCtccttgttgtgtgtttttcttttgcccTACACTTCCCTGAGATTACTTCTTTGTGTCACTGATACGGTCTtgtatttttgttcttttttgatTTTTCGGTAGGtggctttcttttctttgtttgttcaaCTGTGCAGGCtttacctcttttttttctccttcaattTTTCCTAACTAAATCCAAAACATAAAAcgcatcacttcctgtgtgccagagtctttttttttctccatccgGACTCTGTATGTTGAAACAGCGAATGAAAAGCTGTCATGATGTTAATAtgtggcatttttttttgttaatgattATTCCTTTATGGATTTATTGACAGAAAGTGATCACTTTTCATAAGATTACATCTAATTGCACAAGTCCAGCAGAGCAAAATCCTTCTACATGCATAAAATGTGTCAGGCATTACCATTTCCTAAATAACCTGTTAGCACTTAGGTCACATAATGCCAAAGCTTTTGTATTAGGTCACCTCTGGGCTCAGGTTTTATAGGACGCTCGGTTCGTCAAGCAGAACATCTCAATACAACTGATCCCTTTTTGTATCTTTAAATCACAGGTACTCTTTCTTAATTGACTGAACATTTTTGAAGCTTATGGTCCTGTACTTACCGTCAAGATAAAAAAGAGACAACAAACTGTTGATATGCAATTGTTATACATACTATATTTGTATAAATAAATCTATGTGCTTGTGTACAGTGAA
>XM_039792118.1
tttctctctctctctctctatgtgtgtgatGCTGCAGCTCCTGTAGTCTCCAGTCTCCAGTAAACAGCAGTCATGGCGACAGTGGTCCAACCGCTCTCTCTGGATCGAGATGTTGCCAGGGCTATCGAGCTGCTGGAGAAGCTGCAGGAGTCAGGTGACGTGCCTGGTCACAAGCTCCAGTCTCTGAAGAAGGTCCTTCAGAGTGAGTTCTGCACAGCCATCAGAGAGGTGTACCAGTACATGCATGAAACCATCACAGTGAATGGCTGTCCAGAGTACCAGGCCAGGGCCACAGCTAAGGCCACAGTTGCAGCCTTCGCAGCCAGCGAAGGTCACTCCCACCCGCGAGTGGTGGAGCTACCCAAGACCGAGGAAGGGCTGGGCTTCAACGTGATGGGTGGCAAGGAACAGAACTCCCCGATCTACATCTCCCGCATCATCCCTGGAGGCGTGGCTGAGAGGCAGGGCGGCCTAAAGCGAGGGGACCAGCTCCTGTCCGTCAATGGCGTGAGCGTGGAGGGCGAGCACCACGAGAAAGCGGTGGAGCTACTGAAGGCGGCCAAGGACAGTGTTAAGCTGGTGGTTCGCTACACCCCCAAAGTGCTGGAGGAGATGGAAGCTCGCTTTGAGAAGCTGCGTACGGCCCGGCgacgccagcagcagcagatcctcatgcagcagcagcaacagcagcagaacGTGGCCTCTCAGCAGAACCACATGTCGTAGGTTGttccaaaaaaagaagaagtgaaGGTGAGCGAAAAGGTGGATCTCAAAGACCATCTGTCTGTTGTTGAGGATCCCAAAGGAATCTCTCCGTCGTGGAGGAAACCAACAAGTAGAAGACTCTTTtacttcctctctcccttccagTGTACCACCGATTACTGAGCAAAAACAAAGAGAGCCGTTTGTCCTGAAATTGGTGCTTTGAAAGACAAGTATGAGGGAGGCTAGCACTAAAAGTTGTCCATTTTAACTTTGTATTCACTTTTATAAGTTGTTCTCCCCCGGTTGTGAGTCTTACTGAAACTCCCTttcttgtgtttgttgttttgtttacagTCATCCATTTTTGATTGTTCACCGACTTCCACTACACCGCGGCACCTTTGCCATTTTGCCATAGATGTCATGTGTACAGTGGTGTTTCTATTAATTCTTCAACAGGTGCTTGTATCTCTGTATGAATGACCatcagtttcttttctttttttgtcaaacttGTCCTGTTTTGGAATAAACGTGGACTCTTTTTTTACCTTCTATATTGTAGCAGGAAAGATTTTGTATCTTGTAGGTTTAGCAATAACACACATCCTTAAGTTTTTTCATTCTTTGACACTAAATTCACAATCggatacatgcatatatacagaGTTTATGGGATATGTGCACATGTAAATCATTGTAAAGTAAAATGGGTCTTATGTACTGTAAGGCAGCTTCTGTGTCCAGTATATCCTCTGTGCCATTTAAAGAGATTATTGATTTACAGGTGGCATGAATAATTATTGTGCAATAACTGTGATTATTACCAGACTTGGTAAGCCACTCCTAACTGAGATTTATCTAGAAAATATACCATGAGACCAAGATGTTACCAAGAAATTTTACCAAAGTTAAAATCAGTCCTCAGAAATGTTATATGTCGTGTTCTCGACAAACAGAATGTCACCAGTTTTTATTCGAACAGAGTGGGAAttaaatcaaaaataatgcTATAATTGTTGTTCAGTCTATTTTATAGTTTATGAGATCATAGATAtatcatttattcattttattgttCCTTTTAAATATTATGTATTCTTTCTAAGATGTGCAGATTATTATTTATTCCTTGTATAACAGCTGAATATTAGCACATAGTTCATGTAGATCCTGGTTTCTGTTTTGACAATCATTTTGAGAAGTTATTACGAGACTGAGTGGAATGTTTCACTTCCTGTTATCCTCCGTACCTGTAACGGAAATGTTGATAAAAGTGATTATTACTTTTCTATCGTCTCCATCTTTGGTGCTAAGCGCtccttgttgtgtgtttttcttttgcccTACACTTCCCTGAGATTACTTCTTTGTGTCACTGATACGGTCTtgtatttttgttcttttttgatTTTTCGGTAGGtggctttcttttctttgtttgttcaaCTGTGCAGGCtttacctcttttttttctccttcaattTTTCCTAACTAAATCCAAAACATAAAAcgcatcacttcctgtgtgccagagtctttttttttctccatccgGACTCTGTATGTTGAAACAGCGAATGAAAAGCTGTCATGATGTTAATAtgtggcatttttttttgttaatgattATTCCTTTATGGATTTATTGACAGAAAGTGATCACTTTTCATAAGATTACATCTAATTGCACAAGTCCAGCAGAGCAAAATCCTTCTACATGCATAAAATGTGTCAGGCATTACCATTTCCTAAATAACCTGTTAGCACTTAGGTCACATAATGCCAAAGCTTTTGTATTAGGTCACCTCTGGGCTCAGGTTTTATAGGACGCTCGGTTCGTCAAGCAGAACATCTCAATACAACTGATCCCTTTTTGTATCTTTAAATCACAGGTACTCTTTCTTAATTGACTGAACATTTTTGAAGCTTATGGTCCTGTACTTACCGTCAAGATAAAAAAGAGACAACAAACTGTTGATATGCAATTGTTATACATACTATATTTGTATAAATAAATCTATGTGCTTGTGTACAGTGAA

Function

symbol description
lin7a Predicted to enable L27 domain binding activity. Predicted to be involved in maintenance of epithelial cell apical/basal polarity; neurotransmitter secretion; and protein localization to basolateral plasma membrane. Predicted to act upstream of or within exocytosis and protein transport. Predicted to be located in plasma membrane and presynapse. Predicted to be part of MPP7-DLG1-LIN7 complex. Predicted to be active in basolateral plasma membrane; cell-cell junction; and synapse. Is expressed in myotome and nervous system. Orthologous to human LIN7A (lin-7 homolog A, crumbs cell polarity complex component).

NR:

description
PREDICTED: protein lin-7 homolog A isoform X1

GO: NA

KEGG:

id description
K19931 LIN7; protein lin-7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792117.1 False 2752 mRNA 0.41 6 8475630 8510314
XM_039792118.1 True 2756 mRNA 0.41 6 8475630 8510314

Neighbor

gene id symbol gene type direction distance location
ppp1r12a ppp1r12a coding downstream 72772 8343006 ~ 8402858 (-)
pawr pawr coding downstream 142609 8260324 ~ 8333021 (-)
syt1a syt1,LOC100695586 coding downstream 225761 8024594 ~ 8249869 (-)
LOC120553308 LOC101473685,LOC103362094,LOC102192515,LOC107386672 coding downstream 452578 8012810 ~ 8023052 (-)
syt10 syt10,LOC103362092 coding downstream 552449 7911000 ~ 7923181 (-)
si:zfos-932h1.3 LOC104950104 coding upstream 285580 8795894 ~ 8802059 (-)
chpt1 chpt1 coding upstream 337714 8848028 ~ 8861359 (-)
mybpc1 mybpc1 coding upstream 352068 8862382 ~ 8896543 (-)
spi2 LOC102783444,LOC106914467 coding upstream 389161 8899475 ~ 8900998 (-)
spic spic,LOC102783824 coding upstream 391237 8901551 ~ 8903986 (-)
G226658 rps16,LOC103382554 non-coding downstream 45724 8426737 ~ 8429906 (-)
G226654 NA non-coding downstream 118192 8349117 ~ 8357438 (-)
G226655 NA non-coding downstream 124456 8349702 ~ 8351174 (-)
LOC120553157 NA non-coding downstream 918863 7525933 ~ 7556767 (-)
G226417 pah non-coding downstream 963166 7509914 ~ 7512464 (-)
G226711 atp6v1e1,LOC103382684,LOC100708725,LOC103358108,LOC108233293,LOC101477634 non-coding upstream 408177 8918491 ~ 8922944 (-)
G226787 NA non-coding upstream 459075 8969389 ~ 8969898 (-)
G226797 NA non-coding upstream 518732 9029046 ~ 9029370 (-)
G226800 NA non-coding upstream 527457 9037771 ~ 9039857 (-)
G226803 LOC103358093,LOC102788764 non-coding upstream 606496 9116810 ~ 9119971 (-)
G226495 LOC103356655,LOC105934024 other downstream 584319 7888571 ~ 7891311 (-)
LOC120553151 LOC107386793,LOC104950937 other downstream 981323 7422165 ~ 7494307 (-)
usp44 usp44,LOC102783730 other downstream 1197306 7269037 ~ 7278324 (-)
meig1 meig1 other downstream 1386462 7086944 ~ 7089168 (-)
tmem243b tmem243 other downstream 1389308 7073893 ~ 7086322 (-)
ppfia2 ppfia2 other upstream 54928 8565242 ~ 8793910 (-)
dram1 dram1 other upstream 299079 8809393 ~ 8814440 (-)
G227082 anks1b other upstream 2003180 10513494 ~ 10522962 (-)
G227197 LOC102293685,LOC104918784,LOC102194436 other upstream 2469884 10980198 ~ 10981259 (-)
hgfa LOC103365344,LOC104958230 other upstream 2948267 11458581 ~ 11482578 (-)

Expression


Co-expression Network