LOC120553582 (phyh)


Basic Information

Item Value
gene id LOC120553582
gene name phyh
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 20364803 ~ 20376348 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792163.1
AACCCACTTTCTCTCTAGTTATCCATGTGTAGCCTAAATGATCACACCAGGATACAAGCAGACAGGAAAATGTCTCAGGCTGCGGAAAGACTCATGATCAATCACCTTGATGGATCATCTGCCACGATTAGTGCTGTACTAACTTCCGCTCAGACCTTCACCAGTCGCCCACAGACACTGAGATTCACTCATGATACCGACCTGCTGACCCCAGAACAGCGACTCTTCTATGAGGAAAATGGCTTCATCCTCATCAAGAATCTGGTGTCTGAAGAGGACATCGATAAGTTCAGGAAGGCGTTTGAACGGATCTGTCGACAGGAAGTGAAGGTTCCTGGTCTGGTGGTGATGAGGGACGTGGCAATTGTTAAGTCAGAGTTCGTTGCTGATGAAAAAGCGGTTTCCAAACTCCAGGATTTCCAGGAAGACCCTGAACTGTTCCGGTACTGCAACTTACCAcagATTCTGAACTATGTGGAGTGTTTCACTGGACCCAACATCATGGCCATGCACACAATGCTGATCAACAAGCCTCCTGATGCAGGTAAGAAGACGTCTCGTCACCCGATGCATCAGGATCTGCATTACTTCCCGTTCCGCCCAGCAGACAGCATCGTCTGCACTTGGACGGCAATGGAGAAAGTGGACAGGCAGAACGGCTGCCTGGTCGTGCTGCCGGGAACACACACCGGCACACTGCAGGAGCATGACTACCCAGAGTGGGAGGGTGGCGTAAACAAGATGTACCATGGAGTGCGTGGCTATGATCCGAAGCACCCCAGGGTGCACCTGGAGATGGAGAAGGGCGACACTGTCTTCTTCCATCCGCTGCTGATCCATGGCTCTGGCATGAACAGGACGCAGGGCTTCCGCAAGGCCATCTCCTGCCACTATGCCAGCGCTGACTGTTATTACATCAATGTGAAGGGAACCTCACAGGAAAACATAGAGAATGAGGTGAAGGACATCGCAAACAGAAAGTACGGTTTGGGCGAAATGACCTTCAAGGACATCTGGGCTCTCCGAGGCCGTCTGGTGCAGGGAGAGAGGACTTCGCTATAAAGGCACCACAGGCGCGCTACCAACAGACCCCACACCGTTGCAGGGTGAAGACCGCTGGGCTGAAATCAGAACAGATTTATATGGTTTTGGATAAGATACAACAGTGCTGAGTGTTCTTATCATGCAATCCCGAATTCCCTTTACCAACAAAGGAATGTCATTTATAGAttatttactgtttatttaattaAGGCTTCACAATCTGTGTTAATTGTAACATTCTGAAAATGTAATCTAGAGCATGTTGTTTTAACAGGGACTATAAAGACAGGAAATACTATTTAAATAGAAAATGTCGGGTTTCTCGTAAGCGAATCGGTACACAGTAAAATGGAATGAACCTTGATTACACCTCCTGCTACTTGCTGAACAAAATCTTACAGCACAAAATGGAGTTGAAATCACACTTAGCAAAACAGTGGAATAGAGTGAATGCATCTGTTAAATGTCAATAAAATAGTTTTAATTTACCAAAACATTATTAAGAGTAATGAAAGATGATATTTAAGCAGAAATGTGTGAATAGTCAGTGTTGATTGTAGTTCTTGTTAATTAACACAAACAGAGGCCTTGTCCTAAACTGCCTTATAAATGTATAGAAATATCAGTTTGATAATGAGCGaatgaatgtttgtttttgttttctagaATCAtgcaaatgtcatgttttaataacatataacaataaaaatgcattaattaaata

Function

symbol description
phyh Predicted to enable phytanoyl-CoA dioxygenase activity. Predicted to be involved in fatty acid alpha-oxidation. Is expressed in intestinal bulb and liver. Human ortholog(s) of this gene implicated in Refsum disease; Zellweger syndrome; orofacial cleft; and peroxisomal disease. Orthologous to human PHYH (phytanoyl-CoA 2-hydroxylase).

NR:

description
PREDICTED: phytanoyl-CoA dioxygenase, peroxisomal

GO: NA

KEGG:

id description
K00477 PHYH; phytanoyl-CoA hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792163.1 True 1768 mRNA 0.44 9 20364803 20376348

Neighbor

gene id symbol gene type direction distance location
LOC120553583 phyh coding upstream 2283 20355616 ~ 20362520 (+)
elk3 LOC104930592,LOC102779228,LOC102209493,LOC102296588 coding upstream 66717 20287264 ~ 20298086 (+)
plxnc1 NA coding upstream 104375 20212787 ~ 20260428 (+)
LOC120553751 NA coding upstream 173895 20185082 ~ 20190908 (+)
LOC120553750 NA coding upstream 180440 20174451 ~ 20184363 (+)
ccdc3a ccdc3,LOC102778083 coding downstream 46489 20422837 ~ 20434548 (+)
nudt5 nudt5 coding downstream 189249 20565597 ~ 20570560 (+)
fbxo18 NA coding downstream 194640 20570988 ~ 20603179 (+)
rbm17 rbm17 coding downstream 266559 20642907 ~ 20655914 (+)
pfkfb3 pfkfb3,LOC102775874,LOC104933238 coding downstream 301701 20678049 ~ 20689946 (+)
G228989 NA non-coding upstream 63362 20298734 ~ 20301441 (+)
LOC120553527 NA non-coding upstream 442949 19921100 ~ 19921854 (+)
G228922 NA non-coding upstream 448486 19916115 ~ 19916317 (+)
G228912 NA non-coding upstream 493080 19869393 ~ 19871723 (+)
LOC120553215 NA non-coding upstream 523141 19834007 ~ 19841662 (+)
G229058 NA non-coding downstream 63110 20439458 ~ 20448557 (+)
G229060 NA non-coding downstream 66319 20442667 ~ 20454788 (+)
G229108 cdc123,LOC102776001 non-coding downstream 186715 20563063 ~ 20565180 (+)
G229130 NA non-coding downstream 230884 20607232 ~ 20607530 (+)
G229182 NA non-coding downstream 547600 20923948 ~ 20925059 (+)
LOC120553418 NA other upstream 139618 20190928 ~ 20225185 (+)
LOC120553749 NA other upstream 191396 20147078 ~ 20173407 (+)
G228924 NA other upstream 379155 19982248 ~ 19985648 (+)
LOC120553104 LOC103364246,LOC103152567,LOC106913527,LOC103459763,LOC103459764,LOC106945279 other upstream 458851 19852928 ~ 19905952 (+)
LOC120553210 LOC104943308 other upstream 525421 19631937 ~ 19839382 (+)
ucmaa NA other downstream 6045 20382393 ~ 20391406 (+)
LOC120553023 LOC106946322,LOC103151516,LOC104922640 other downstream 771919 21148267 ~ 21150351 (+)
arid2 arid2 other downstream 1000524 21376872 ~ 21429238 (+)
G229423 NA other downstream 1461574 21837922 ~ 21847020 (+)
G229425 NA other downstream 1472863 21849211 ~ 21850601 (+)

Expression


Co-expression Network