LOC120553583 (phyh)


Basic Information

Item Value
gene id LOC120553583
gene name phyh
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 20355616 ~ 20362520 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792164.1
tgtgtgtgtgtgtgtccgtccttTGCCCTTGCCTAACCCATGGATGTAGCCTGTAAGAGACGTACGAGACGTCTAACCCACTTTCTCTAGTTATCCATATGTAGCCTACAGGATCACACCGGGATAAAGTAACCAGACGGGAAAATGTCTCGGGCTGCGGAAAGACTCAGACTGATGATCAATCACCTTGAACGATCATCTGCCACGATTAGTGCTGTACCAACTTACGCTCAAACCTTCACCAGTCGCCCACAGACACTGAGATTCACTCATGATACCGACCTGCTGACCCCAGAACAGCGACTCTTCTATGAGGAAAATGGCTTCATCCTCATCAAGAATCTGGTGTCTGAAGAGGACATCGATAAGTTCAGGAAGGCGTTTGAACGGATCTGTCGACAGGAAGTGAAGGTTCCTGGTCTAATGGTGATGAGGGACGTGGCAATTGTTAAGTCAGAGTTCGTTGCTGATGAAAAAGCGGTTTCCAAACTCCAGGATTTCCAAGAAGACCCTGAACTGTTCCGGTACTGCAACTTGCCACAGATTCTGAACTATGTGGAGTGTTTCACTGGACCCAACATCATGGCCATGCACACAATGCTGATCAACAAGCCTCCTGATGCAGGTAAGAAGACGCCTCGTCACCCGATGCATCAGGATCTGCATTACTTCCCGTTCCGCCCAGCAGACAGCATCGTCTGCACTTGGACGGCAATGGAGAAAGTGGACAGGCAGAACGGCTGCCTGGTCGTGCTGCCGGGAACACACACCGGCACACTGCAGGAGCATGACTACCCAGAGTGGGAGGGTGGTGTAAACAAGATGTACCATGGAGTGCGTAATTATGATCCGCAGCGTCCCAGGGTGCACCTGGAGATGGAGAAGGGCGACACTGTCTTCTTCCATCCGCTGCTGATGCATGGCTCTGGCATGAACAAGACGCAGGGCTTCCGCAAGGCCATCTCCTGCCACTATGCCAGCGCTGACTGTTATTACATCGATGTGAAGGGAACCTCACAGGAAAACATAGAGAATGAGGTGAAGGACATTGCAAACAGAAAGTACGGTTTGGACGAAATTACCTTCAAGGACACCTGGGCTCTCCGAGGCCGTCTGGTGCAGGGAGAGAGGACTTCACTATAAAGGCACCACAGGCGCGCTACCAACAGACCCCACACCGTTGCAGGGTGAAGACACCTGGGCTGAAATCAGAACACTTTTATATGGTTTTGGATAAGATACAACAGTGCTGAGTGTTCTTATCATGCAATCCCGAATTCCCTTTACCAACAAAGGAATGTCATTTATAGATTATTTACTGTTCAGAATCTGtgttaattttaacattttgaaaatgtaatctAGAGCATGTTGTTTTAACAGGGAATATAAAGACAGGAAATACTattttaaatagaaaatgtCAGGTACCTCGTGAGCAAATCGGTACACagtaaaattgaattaaaggtgctgtaggtaggattgagaagttccaggacttagccaaaaaatttgaatatcgacaacttctcagtccctcccccccttcctgctgaagcccaaaacggtctc
>XM_039792166.1
gtcacaggacagtgtacaggacagtgtccgactgtcccgggacagtcatggagtcacaggacagtgtacaggacagtgacTGTCTCGGGACAGTCATAgcagtcacaggacagtgtacaggacagtttttgctgccactTGTTAACATTTGTGTCGTTTCCTTGACTTCTCGTTCTTCAGAGTGCTGTACCAACTTACGCTCAAACCTTCACCAGTCGCCCACAGACACTGAGATTCACTCATGATACCGACCTGCTGACCCCAGAACAGCGACTCTTCTATGAGGAAAATGGCTTCATCCTCATCAAGAATCTGGTGTCTGAAGAGGACATCGATAAGTTCAGGCGTTTGAACGGATCTGTCGACAGGAAGTGAAGGTTCCTGGTCTAATGGTGATGAGGGACGTGGCAATTGTTAAGTCAGAGTTCGTTGCTGATGAAAAAGCGGTTTCCAAACTCCAGGATTTCCAAGAAGACCCTGAACTGTTCCGGTACTGCAACTTGCCACAGATTCTGAACTATGTGGAGTGTTTCACTGGACCCAACATCATGGCCATGCACACAATGCTGATCAACAAGCCTCCTGATGCAGGTAAGAAGACGCCTCGTCACCCGATGCATCAGGATCTGCATTACTTCCCGTTCCGCCCAGCAGACAGCATCGTCTGCACTTGGACGGCAATGGAGAAAGTGGACAGGCAGAACGGCTGCCTGGTCGTGCTGCCGGGAACACACACCGGCACACTGCAGGAGCATGACTACCCAGAGTGGGAGGGTGGTGTAAACAAGATGTACCATGGAGTGCGTAATTATGATCCGCAGCGTCCCAGGGTGCACCTGGAGATGGAGAAGGGCGACACTGTCTTCTTCCATCCGCTGCTGATGCATGGCTCTGGCATGAACAAGACGCAGGGCTTCCGCAAGGCCATCTCCTGCCACTATGCCAGCGCTGACTGTTATTACATCGATGTGAAGGGAACCTCACAGGAAAACATAGAGAATGAGGTGAAGGACATTGCAAACAGAAAGTACGGTTTGGACGAAATTACCTTCAAGGACACCTGGGCTCTCCGAGGCCGTCTGGTGCAGGGAGAGAGGACTTCACTATAAAGGCACCACAGGCGCGCTACCAACAGACCCCACACCGTTGCAGGGTGAAGACACCTGGGCTGAAATCAGAACACTTTTATATGGTTTTGGATAAGATACAACAGTGCTGAGTGTTCTTATCATGCAATCCCGAATTCCCTTTACCAACAAAGGAATGTCATTTATAGATTATTTACTGTTCAGAATCTGtgttaattttaacattttgaaaatgtaatctAGAGCATGTTGTTTTAACAGGGAATATAAAGACAGGAAATACTattttaaatagaaaatgtCAGGTACCTCGTGAGCAAATCGGTACACagtaaaattgaattaaaggtgctgtaggtaggattgagaagttccaggacttagccaaaaaatttgaatatcgacaacttctcagtccctcccccccttcctgctgaagcccaaaacggtctcct

Function

symbol description
phyh Predicted to enable phytanoyl-CoA dioxygenase activity. Predicted to be involved in fatty acid alpha-oxidation. Is expressed in intestinal bulb and liver. Human ortholog(s) of this gene implicated in Refsum disease; Zellweger syndrome; orofacial cleft; and peroxisomal disease. Orthologous to human PHYH (phytanoyl-CoA 2-hydroxylase).

NR:

description
PREDICTED: phytanoyl-CoA dioxygenase, peroxisomal

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0051213 dioxygenase activity molecular_function

KEGG:

id description
K00477 PHYH; phytanoyl-CoA hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792164.1 True 1575 mRNA 0.48 9 20355616 20362518
XM_039792166.1 False 1543 mRNA 0.48 8 20357331 20362520

Neighbor

gene id symbol gene type direction distance location
elk3 LOC104930592,LOC102779228,LOC102209493,LOC102296588 coding upstream 57530 20287264 ~ 20298086 (+)
plxnc1 NA coding upstream 95188 20212787 ~ 20260428 (+)
LOC120553751 NA coding upstream 164708 20185082 ~ 20190908 (+)
LOC120553750 NA coding upstream 171253 20174451 ~ 20184363 (+)
LOC120553415 NA coding upstream 193577 20124641 ~ 20162039 (+)
LOC120553582 phyh coding downstream 2283 20364803 ~ 20376348 (+)
ccdc3a ccdc3,LOC102778083 coding downstream 60317 20422837 ~ 20434548 (+)
nudt5 nudt5 coding downstream 203077 20565597 ~ 20570560 (+)
fbxo18 NA coding downstream 208468 20570988 ~ 20603179 (+)
rbm17 rbm17 coding downstream 280387 20642907 ~ 20655914 (+)
G228989 NA non-coding upstream 54175 20298734 ~ 20301441 (+)
LOC120553527 NA non-coding upstream 433762 19921100 ~ 19921854 (+)
G228922 NA non-coding upstream 439299 19916115 ~ 19916317 (+)
G228912 NA non-coding upstream 483893 19869393 ~ 19871723 (+)
LOC120553215 NA non-coding upstream 513954 19834007 ~ 19841662 (+)
G229058 NA non-coding downstream 76938 20439458 ~ 20448557 (+)
G229060 NA non-coding downstream 80147 20442667 ~ 20454788 (+)
G229108 cdc123,LOC102776001 non-coding downstream 200543 20563063 ~ 20565180 (+)
G229130 NA non-coding downstream 244712 20607232 ~ 20607530 (+)
G229182 NA non-coding downstream 561428 20923948 ~ 20925059 (+)
LOC120553418 NA other upstream 130431 20190928 ~ 20225185 (+)
LOC120553749 NA other upstream 182209 20147078 ~ 20173407 (+)
G228924 NA other upstream 369968 19982248 ~ 19985648 (+)
LOC120553104 LOC103364246,LOC103152567,LOC106913527,LOC103459763,LOC103459764,LOC106945279 other upstream 449664 19852928 ~ 19905952 (+)
LOC120553210 LOC104943308 other upstream 516234 19631937 ~ 19839382 (+)
ucmaa NA other downstream 19873 20382393 ~ 20391406 (+)
LOC120553023 LOC106946322,LOC103151516,LOC104922640 other downstream 785747 21148267 ~ 21150351 (+)
arid2 arid2 other downstream 1014352 21376872 ~ 21429238 (+)
G229423 NA other downstream 1475402 21837922 ~ 21847020 (+)
G229425 NA other downstream 1486691 21849211 ~ 21850601 (+)

Expression


Co-expression Network