LOC120553589 (parpbp,LOC102779589)


Basic Information

Item Value
gene id LOC120553589
gene name parpbp,LOC102779589
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7592879 ~ 7605838 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792172.1
TGTCTACTAAAAGCTGATTGGTCAGGAGGTACTAAACGTCATCGGCAGTTTAAAAATTCAAAACTGCTTTTTGTCGTGGACGTGTATTCTCGGAGACTGCTACAATATTAGAGGAGAACATGGAAGCTGTAGGAGACCGTCTGAaggtgatggttaaagtcttcAGGAGAGAGTGCCACAGGGTTTTACACTCTGAGAGGACCACCATTCATGGAGCTGATGGCATGCTGATGTTGCTGCAGCTGGCCATGGCAGATGTTAATAAGCAGCACAGCGGAGAGTTCAAAGTGGCTCTGAGTGATGTCCTGATGGCCTGGAAACACTTACTGTTTGACAAACTTCACCTGCCACCCCCCAACATTGCACGCTTGGAGAACTATGATCTCATCCTGGAGACATACGAATCCTTCCTGAAACGCTCCAACACTGTGGACCTGGTTGATATCCTCTCCATGTACAAACAGCTGAGCTTAGTGGACTCAGACCCACAGGAGCCTGTGAGTCCGATCCAGCTGTTTGAGTTTTTATCAGGTAACACGGATGTCTCAGAGTTACCAGACTCTTCAGTCCCATCAACACCGTCTAGTAAAAGCAGACCCTGCAACTCTCAGGTAAAAATGGCAGTGAGAAGGGTTTTCTGCTCCTATCTGAATTTGCTTGTGAATGCCAAGAACGACATGGCGCTGGCGCTAACCATTGACGTCCCTAGTCGCACTCTTGGACGTCAGGCATTTACCGACATAAAGCATGCTGCACATAACAACAACACTTCTCTCTTCTTGGCTGTGACATCTTTTGTGAGGGCCATCCAGCTCGGAGGGAAGGGCTACGCTCCAGCTGAGTCTGACCCGCTGAGGAAACATGTCAAAGGCCTGTCTGACTTTGTTCAGTTTCTAGACAACCTGGAAGAAATACTGGGAGAGATTCCTGACCCAAGTGTGTGTGGAGCCAGGCTGGTGACTGCCATCAGGGCAGTGCTGGTGAAGGGACGCAGCAGTGGAGATGCAGTGTTCACTGCAGCTGAGGAGACGACAAAGGAGCTGAAGGAGAGGATCTGCCAGCTACACCAGATCCAGAAAGGGATTGCTAATGGAAGCGGGACGGGGATAAGCCCTGCCAGGCCAAAGGCTTATGCGGTCAATCACTGCACTGCATACGGAGGTCGGGACACTGTGAAGGTGCTGATGGCTCTGCTGGATGAAGAAGCGCTGACTCCTCCGTGTCAGAACAAGGCAGACCTGCTGTCTGAGGACCAGCCCACCCTCAGTGGGGCAGAGGGGACCTGCGTCCTCAATTTGTTCAGATCCCCTGAAGTGTCTACTGGATGTTCTCCAGAACCTCTAAAGAACCGAGTCCAGAGCCGACTAGACCTGCTCAAACCCAAGCCCAGAGACAAAGTCATTCGATCCCAGTTTTCGTGCACATACAAGGATGAAGAACTGCCACTCAACCGTGTGCTGGACTTCCCCAGCACCAGCCAGGTCCCTACCTGTGTGCACCCAGCACCCAAACGCCAAACCATCCCAGCTGTGGATGGGGAGTGCAGCTCTGATGTGGAGGAGACAATCGAAGCCAAGTCTACATCTGAATGCCCGAATAAGGAGCAGAGCGGTGTGCAGCGGGGGCCAGCTCTTGAGCCAAGAAGTGGAAATGTGCAAAACAGAGGTGCAGGCCCGGGCAATAGGAAGAAAACTGGCACTCAGATGCAGAGGAAGGGCAACAAGAGGAAGCAGGTGGATTCTGACCAACATGGAGGATCAGAGAACGAGCCTCCACAGAAGAAACAGCTCACTAGTGTCTTGGTCCAAATGCAGAGCAAGAATGTCAGTAAGGCCTCGAGTAAGAAGAAGCTGATAGCTGGGCAGGGAAAGCTAACCAGCTTCTTCAGACTCTAATACGGGTTTGTACTGGTTTCATGTCAGTCTATGGACTTTCTGTCAAATGGCGTTCATACAAAGCAGCTGAATGttgttcatttgttttcttccactgACAAATCTTGTGCACTATGTTCCAGttaaggctgcaactaatgatttttAGTCCCAGTTAATCTGTTCActgtttatgatttttttt
>XM_039792174.1
ACCATTAAATTAACATTGTCCGTGATTTAGTGCAGCCATCAACATTTGATACTCTTAATTATATCTGTGCATCGTGTGGGAGCTGACATAAAGACACATCGTGATACGTGTTTTGAAATAAATAGAGAACATGGAAGCTGTAGGAGACCGTCTGAaggtgatggttaaagtcttcAGGAGAGAGTGCCACAGGGTTTTACACTCTGAGAGGACCACCATTCATGGAGCTGATGGCATGCTGATGTTGCTGCAGCTGGCCATGGCAGATGTTAATAAGCAGCACAGCGGAGAGTTCAAAGTGGCTCTGAGTGATGTCCTGATGGCCTGGAAACACTTACTGTTTGACAAACTTCACCTGCCACCCCCCAACATTGCACGCTTGGAGAACTATGATCTCATCCTGGAGACATACGAATCCTTCCTGAAACGCTCCAACACTGTGGACCTGGTTGATATCCTCTCCATGTACAAACAGCTGAGCTTAGTGGACTCAGACCCACAGGAGCCTGTGAGTCCGATCCAGCTGTTTGAGTTTTTATCAGGTAACACGGATGTCTCAGAGTTACCAGACTCTTCAGTCCCATCAACACCGTCTAGTAAAAGCAGACCCTGCAACTCTCAGGTAAAAATGGCAGTGAGAAGGGTTTTCTGCTCCTATCTGAATTTGCTTGTGAATGCCAAGAACGACATGGCGCTGGCGCTAACCATTGACGTCCCTAGTCGCACTCTTGGACGTCAGGCATTTACCGACATAAAGCATGCTGCACATAACAACAACACTTCTCTCTTCTTGGCTGTGACATCTTTTGTGAGGGCCATCCAGCTCGGAGGGAAGGGCTACGCTCCAGCTGAGTCTGACCCGCTGAGGAAACATGTCAAAGGCCTGTCTGACTTTGTTCAGTTTCTAGACAACCTGGAAGAAATACTGGGAGAGATTCCTGACCCAAGTGTGTGTGGAGCCAGGCTGGTGACTGCCATCAGGGCAGTGCTGGTGAAGGGACGCAGCAGTGGAGATGCAGTGTTCACTGCAGCTGAGGAGACGACAAAGGAGCTGAAGGAGAGGATCTGCCAGCTACACCAGATCCAGAAAGGGATTGCTAATGGAAGCGGGACGGGGATAAGCCCTGCCAGGCCAAAGGCTTATGCGGTCAATCACTGCACTGCATACGGAGGTCGGGACACTGTGAAGGTGCTGATGGCTCTGCTGGATGAAGAAGCGCTGACTCCTCCGTGTCAGAACAAGGCAGACCTGCTGTCTGAGGACCAGCCCACCCTCAGTGGGGCAGAGGGGACCTGCGTCCTCAATTTGTTCAGATCCCCTGAAGTGTCTACTGGATGTTCTCCAGAACCTCTAAAGAACCGAGTCCAGAGCCGACTAGACCTGCTCAAACCCAAGCCCAGAGACAAAGTCATTCGATCCCAGTTTTCGTGCACATACAAGGATGAAGAACTGCCACTCAACCGTGTGCTGGACTTCCCCAGCACCAGCCAGGTCCCTACCTGTGTGCACCCAGCACCCAAACGCCAAACCATCCCAGCTGTGGATGGGGAGTGCAGCTCTGATGTGGAGGAGACAATCGAAGCCAAGTCTACATCTGAATGCCCGAATAAGGAGCAGAGCGGTGTGCAGCGGGGGCCAGCTCTTGAGCCAAGAAGTGGAAATGTGCAAAACAGAGGTGCAGGCCCGGGCAATAGGAAGAAAACTGGCACTCAGATGCAGAGGAAGGGCAACAAGAGGAAGCAGGTGGATTCTGACCAACATGGAGGATCAGAGAACGAGCCTCCACAGAAGAAACAGCTCACTAGTGTCTTGGTCCAAATGCAGAGCAAGAATGTCAGTAAGGCCTCGAGTAAGAAGAAGCTGATAGCTGGGCAGGGAAAGCTAACCAGCTTCTTCAGACTCTAATACGGGTTTGTACTGGTTTCATGTCAGTCTATGGACTTTCTGTCAAATGGCGTTCATACAAAGCAGCTGAATGttgttcatttgttttcttccactgACAAATCTTGTGCACTATGTTCCAGttaaggctgcaactaatgatttttAGTCCCAGTTAATCTGTTCActgtttatgatttttttt

Function

symbol description
parpbp Predicted to enable DNA binding activity. Predicted to be involved in negative regulation of double-strand break repair via homologous recombination. Predicted to act upstream of or within DNA repair. Predicted to be located in cytoplasm and nucleus. Predicted to be active in chromatin. Orthologous to human PARPBP (PARP1 binding protein).

NR:

description
PREDICTED: PCNA-interacting partner

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792172.1 False 2079 mRNA 0.50 11 7592879 7605838
XM_039792174.1 True 2090 mRNA 0.50 11 7592998 7605838

Neighbor

gene id symbol gene type direction distance location
LOC120553155 pah coding upstream 30674 7546428 ~ 7562205 (+)
pah pah coding upstream 68460 7509964 ~ 7524419 (+)
metap2a metap2,LOC104945620,LOC102784010,LOC102294382 coding upstream 325429 7257270 ~ 7267450 (+)
vezt vezt coding upstream 336994 7240852 ~ 7255885 (+)
trnaw-cca_35 NA coding upstream 445539 7147269 ~ 7147340 (+)
LOC120553463 LOC103356656 coding downstream 263923 7869761 ~ 7887525 (+)
tnnt2c LOC102777397 coding downstream 289707 7895545 ~ 7897483 (+)
ppfibp1a LOC103362093,LOC102299773,LOC102192229 coding downstream 372239 7978077 ~ 8012811 (+)
myf6 myf6 coding downstream 856486 8462324 ~ 8464094 (+)
myf5 myf5 coding downstream 862823 8468661 ~ 8471034 (+)
G226352 NA non-coding upstream 246717 7335054 ~ 7346162 (+)
G226319 usp44 non-coding upstream 320563 7272077 ~ 7272316 (+)
G226318 NA non-coding upstream 321172 7271317 ~ 7271707 (+)
G226317 NA non-coding upstream 322126 7269104 ~ 7270753 (+)
G226316 NA non-coding upstream 324121 7267509 ~ 7268758 (+)
G226452 igf1 non-coding downstream 10350 7616188 ~ 7707570 (+)
LOC120553625 NA non-coding downstream 285571 7891409 ~ 7955485 (+)
G226505 NA non-coding downstream 418523 8024361 ~ 8028661 (+)
G226507 syt1,LOC106518246,LOC100695586 non-coding downstream 441941 8047779 ~ 8057617 (+)
G226515 NA non-coding downstream 654495 8260333 ~ 8306828 (+)
LOC120553156 LOC104945813 other upstream 23576 7566655 ~ 7569303 (+)
LOC120553154 LOC104945813,LOC103356648 other upstream 60802 7525892 ~ 7532077 (+)
ascl1a ascl1 other upstream 166625 7423618 ~ 7426254 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other upstream 192480 7370442 ~ 7400399 (+)
klhl42 klhl42 other upstream 224663 7363325 ~ 7368216 (+)
rps16 rps16,LOC103382554 other downstream 820797 8426635 ~ 8432697 (+)
lhfpl3 lhfpl3,LOC101483460 other downstream 1528756 9134594 ~ 9173220 (+)
ndufb2 ndufb2,LOC102790702 other downstream 1631388 9237226 ~ 9241349 (+)
G227121 kera other downstream 3091416 10697254 ~ 10699718 (+)
G227141 dcn,LOC103382665 other downstream 3126231 10732069 ~ 10737503 (+)

Expression


Co-expression Network