kdm7aa (kdm7a)


Basic Information

Item Value
gene id kdm7aa
gene name kdm7a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 9243404 ~ 9266246 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792212.1
TCATTCCTGCGTTGTTTAGGGACACTAGGAAGATGGCGGCGGCCCCGCTGTACTGTGTCTGCCGGCAGCCCTACGATGTAAGCCGGTTTATGATCGAGTGCGACATCTGTAAAGACTGGTTTCACGGCAGCTGTGTGCAGGTAGAAGAGCATCATGCTGTGGATATCGACGTTTACCACTGTCCCAACTGTGATGTCGTACACGGACCCTCCCAGATGAAAAAGCGCAACAATGGCCACAGGCACGACTACACAGAACCAGACGATGGATCGAAGCCGGTGCAGGCTGGCACTCGAGTGTTTGTCCAGGAGCTCCAGAACAGGACCTTCGCCAGTGGTGAGGAGATCATGATGCACATGAAGGGCGAGCAGGTGACAACCAGGTACCTGGAGAGGCACGGCTTCAACTACCCCATAGCGGTCACAGAGATGGAGGGCCTGGGACTCAAACTACCAGTCTCTACTTTCTCTGTCAAAGATGTGGAGCAGTATGTCGGTGGCGACAAAATCATCGATGTGATAGATGTGGCACGGCAGGCGGACAGCAAGATGAAGCTCAGCGAGTTTATCAAGTATTACACCAACCCACATCGACCCAAAGTCCTCAACCTCATCAGCCTGGAGTTCTCTGACACTAAGATGTCAGAGTTGGTGGAGGTTCCTGACGTGGCTCGTAAGATGTCCTGGGTAGAGAACTACTGGCCGGACGACTCCTTCTTCCCCAAGCCCTTTGTCCAGAAGTACTGTCTTATGGGGGTTAAGGACAGCTACACAGATTTCCACATAGACTTCGGAGGCACCTCTGTCTGGTACCATGTTCTCTGGGGTGAGAAGATCTTCTACTTGATCAAGCCCACTCTCGCCAACCTTGCACTATATGAGGCATGGAGCTCCTCGCCCAATCAGAGCGAATTGTTCTTTGGGGACAAAGTGGAGAAGTGCTACAAGTGTGTAGTGTCCCAAGGAACCACCCTGCTCATCCCTACAGGCTGGATCCATGCTGTTCTCACCTCTCAGGATTGCATGGCATTTGGAGGGAACTTCCTTCACAACCTCAATATTGGCATGCAGCTCAGGTGTTATGAAATGGAGCGCCGCCTGAAAACCCCAGACCTCTTTAAGTTTCCGTACTTCGAGGCCATCTGTTGGTACGTGGCCAAGAACCTCTTGGAAATGCTAAAAGAGCTACGAGAGGACAACTGTCCACCACCAACCTACCTAGTGGAGGGAGTCAAGGCTTTAATCAGTGCACTGAGGACCTGGTTGAAAAGAGAGGTGACTGAGCCCACCAGTGAAGTACCAGACCATATCAGGCCTAACCATCTCATTAAAGAGCTGACCAAGGAAATCCGCTACCTGGAGGAGGAACCAGTCAGTGGTAGCAAGCCAGTGAAGTCTCAGGGAAGTGGGTGTGGAGTTCCATCTGGATCAAATGCCTGCCCGGCTACTCGTGCTACGCTGGAGAAGCTGTCCCAGGCCCGCCAGGCGAGAAGGGCCGCCAGGCGGTTGAGGGAGCAGCAGCGGCAGACCCCTAAAGTGCCCTCCAACTTGGACATCTTAGAGCAGCACACCCGGGAGGTGCTAAGGAGGCTGGAGGTGGGGCCGCTCGAGGAGGATGCGGCGTTCTGTGCCAAGGTTCGCGGGAAGCTCAACAAAGTGTCAACTGCATCCGCAGCTGCAGAGACTTTAGAGGAGAACCACCTACGGCTAATGCTGGTCAACGGCAGAATTATCAGAGATATGAGGCGGCCAGGCAGCAGCCCGGTAAAGACGGAGGGTGAGCGGTCATCTGTTGGCCCACCAAAGAGTTGTGTGGACGTGAAGTCGGAGAGGACGCGGCACAGTCAAGAGCAGCACAGCACAGTTGAGAAACCCCCACTCTTCAGTGGTCTGGAGAGGGTGAAGACTGAACTCAGGGAAGAAGTCTCAGGACACACCAGTGTGTCAGACGTGGATTTAGACAGCGACTCTCCCACAGAGCGTAAAGCATCATTGTCGtcatcgtcgtcgtcgtcgtcctcTTCTGACGAGGATTCAGGGAGTTcccaggaggaagaggaggacgaggagaaGAAGGGCTTATATCAGCAGAGAGGCTCAGGGCACACCATAGAGCTGGACCAGTCTGGCCAGAAACTcaggcacaaacacaaaccacTCAAACGAGAACGTCCTACCTCACCCAGCACAGAAGAGGCCATTCAGGGGATGCTATCTATGGCTGGTCTGCTGTGCTCCTCCAAGCCGGAGAAGGTAGGCTCGTCCCAGGAGCCCTGGTGGTCCAGCTCCAGCCAGTGCTCGCCGCTGGAGCAGAGGGAGGAGGCGCAGCACCAGCACCGACTGCAGGGGGACAAGAGCCCGATGGACAGCCAGGGCAACAGCAGCGAGGCCTGGGACAATCAGGGGCTCCCTAGCCCTCTTAGCCGAAGCCACGGCAGCAGCCCAGAGACAGACTACCAGTACTGTGACCCCTCAATGTCTCCACCCCACCCCTCCAAGAGGCACGCCCCCAACCCCCCACCTATCAGCAATCAGGCCACGAAAGGCAAGCGGCCCAAAAAAGGAATGGCCACAGCCAAGCAGAGACTGGGGAAGATCCTAAAACTCAACAGACATAATCGCGTCTTTGTGTAACACTCCAAATCTTCAAAAGCAAAATGATGCATGGGGACATTTTcttgaagacaaaaaaaggaaacattggCGTATTTGTTACAAGACACTTTTGTGCTGTGGAaatggagagaggaaaaaaaacccgAACACACTGCCTGGAGACTAATCTTGACTGAATCTTGACACGTAAAACACGCTCACTGTGCATGCTTAGGAGACAGGGTATTTGATATGAAATAAGCAAGTGCACGACTTCACCACACAAGCACACtaagaacaaaaacagaaaagagctACAGGAAGCAGAGCGGGACAAGCATGTCATAAAATGTTCTGCTGCAGGGAAAGGTGGATCCAAGCTCCTGCGGGCATTCAAATGGACAAAGGAGATGTAGGAGGTATACCAAACTAACAAGAAAATGACTCGCTTTGCTGGGAAGCAGCTTCTGATGCTAAGATCATCTGCATCACATCTTGATATTTACTCTCCCTGCTGAacgaacccccccccccactccgcACAACATTCACTTGCTTCATGTCTATCTGAGACAAACTGAACATGGAGGAGCAGATGCAACTGAGCTGTACATCTCGAGCAgggtctttttttcccccccctctGGCTCGGAGGATGGAGACGAGGTGCTAAGGAGGACGCGGTGAACTGAAATTTCAAAATGGTGCTTATTGTTTGTACTTTTCTCCACTCATGCTTGTCCCAAGCCCTCACACCCCTTTATCTTAATCACACCAGCAATAATGACTTTGAGGAGAGAAGAAACGGTGAGAGGCAGCACTTTGGTGCATTATTCCCCAATTCTTCTAtttgta

Function

symbol description
kdm7a Enables histone demethylase activity; methylated histone binding activity; and transition metal ion binding activity. Involved in histone lysine demethylation. Located in nucleolus and nucleoplasm. Implicated in melanoma.

NR:

description
PREDICTED: lysine-specific demethylase 7A

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11445 KDM7A, JHDM1D; [histone H3]-dimethyl-L-lysine9 demethylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792212.1 True 3449 mRNA 0.53 18 9243404 9266246

Neighbor

gene id symbol gene type direction distance location
kmt2e kmt2e coding downstream 10051 9202894 ~ 9233353 (-)
orc5 orc5,LOC102789043 coding downstream 108989 9120327 ~ 9134415 (-)
golgb1 NA coding downstream 128418 9096524 ~ 9114986 (-)
hcls1 LOC106957547,LOC106924663,LOC103140207,LOC104950087,LOC103358095 coding downstream 147581 9089726 ~ 9095823 (-)
pex26 pex26 coding downstream 156271 9084081 ~ 9087133 (-)
si:dkey-97m3.1 LOC103366393,LOC101485159,LOC102205266,LOC102312910,LOC100698773 coding upstream 7923 9274169 ~ 9327128 (-)
magi2a magi2 coding upstream 68256 9334502 ~ 9594691 (-)
gnai1 gnai1,LOC107590838,LOC103382723,LOC100706147 coding upstream 382244 9648490 ~ 9669535 (-)
sema3c sema3c coding upstream 414961 9681207 ~ 9722456 (-)
LOC120553797 LOC104925308,LOC103361818,LOC104949407 coding upstream 487497 9753743 ~ 9770326 (-)
G226803 LOC103358093,LOC102788764 non-coding downstream 123433 9116810 ~ 9119971 (-)
G226800 NA non-coding downstream 203547 9037771 ~ 9039857 (-)
G226797 NA non-coding downstream 214034 9029046 ~ 9029370 (-)
G226787 NA non-coding downstream 273506 8969389 ~ 8969898 (-)
G226711 atp6v1e1,LOC103382684,LOC100708725,LOC103358108,LOC108233293,LOC101477634 non-coding downstream 320460 8918491 ~ 8922944 (-)
G226917 NA non-coding upstream 475758 9742004 ~ 9742560 (-)
G227019 NA non-coding upstream 951840 10218086 ~ 10220450 (-)
G227020 NA non-coding upstream 954710 10220956 ~ 10284085 (-)
G227021 pacsin2,LOC102778832 non-coding upstream 957248 10223494 ~ 10225897 (-)
LOC120553506 NA non-coding upstream 1243485 10509731 ~ 10537837 (-)
dram1 dram1 other downstream 428964 8809393 ~ 8814440 (-)
ppfia2 ppfia2 other downstream 449494 8565242 ~ 8793910 (-)
G226495 LOC103356655,LOC105934024 other downstream 1352093 7888571 ~ 7891311 (-)
LOC120553151 LOC107386793,LOC104950937 other downstream 1749097 7422165 ~ 7494307 (-)
usp44 usp44,LOC102783730 other downstream 1965080 7269037 ~ 7278324 (-)
G227082 anks1b other upstream 1247248 10513494 ~ 10522962 (-)
G227197 LOC102293685,LOC104918784,LOC102194436 other upstream 1713952 10980198 ~ 10981259 (-)
hgfa LOC103365344,LOC104958230 other upstream 2192335 11458581 ~ 11482578 (-)
pcloa pclo,LOC107085986,LOC103358500,LOC102794373,LOC108235068,LOC106514760 other upstream 2351109 11617355 ~ 11676832 (-)
cracr2ab LOC102301749,LOC103365394 other upstream 2571002 11837248 ~ 11848941 (-)

Expression


Co-expression Network