dera (dera)


Basic Information

Item Value
gene id dera
gene name dera
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 25768737 ~ 25779615 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792221.1
cagcagcagcagcagcagcagcagcagaagaagaagaagaagcagcagagtgttgaccatagacagtatataagaaggtgTTGACAGGTCTCTCGGCTGAAGGTGGCTGTAACATGTGCCTGTGATTAGATCCTATCAGTTCTTCAACATGTCTGCCAGGAACCCGGGGATGAAGCTCGACCTGGGCTGGATCTCTAAAGTGAGAGTGAACACACACGCCGTCCTGAAGAGAGCTCAGACCATCCAGGGACACAAGACCCCCAAGAAACAGTGGCAGGCGGCCTGGCTGCTGAAGGCTGTCACATGTATCGACCTGACAACTCTTGCTGGAGACGATACACCGTCCAACGTCCACCGGCTGTGTCTGAAAGCCATCCAGCCGGTCCCATACCACCTGCTCAACAAGATGGACATGCACGACCAAGGAGTAACtactgcagctgtgtgtgtgtatccgtcTCGGGTGGCTGATGCCGTTAAATCACTGAAAGCAGCCAACTCCAGCCTCGCTGTGGCCTCAGTGGCCACTGGTTTCCCAGCAGGCCAGACACCACTGGAGACCCGGCTGCAGGAAGTCCGCTTGGCGGTGGCTGACGGTGCCACAGAGATCGACATCGTCATCAACAGGACGCTGGCGCTCACTGGACAGTGGGAAGCCATGTACGAGGAGGTGCGTCAGTTCCGGGAGGCCTGCGGGGACGCCCACATGAAGACCATCCTGGCTGTGGGAGAGCTGGGCACCTTCACCAATGTGTACAAGGTCAGCCTGGTAGCCATGATGGCCGGTTCGGACTTCATCAAGACGTCCACAGGAAAGGAGTCCGTCAACGCCACTTACCCTGTCGCCATAGTGATGGTGAGGGCCATCCGGGACTACTTCTTGTGTACAGGCCATAAGGTGGGCTTTAAGCCAGCGGGGGGGATCCGCACGGCTCACGAGTCTCTGCTGTGGCTCACGCTGATCAAAGAGGAGCTGGGACACGATTGGCTCTGCCCGCACCTTTTCCGCCTCGGAGCCAGCAGCCTATTGGCTGACATCGAGAGGCAGATCTACCATCATGTGACTGGACAGTATGCGGCCTATCATGAGCTGCCTATGGCCTGAagctgtgacttcctgttttaaTGACCAATCAGAACCTCAGACTCACCACACAAGCCTGACAGTGTTGTTCAGTGCTTTAACTGAACTGACTGGGACCAATGTCTGTGACACAACGAGAACGGCTTCTTCAGAAGCATATTACTGTACTACATTATACACTTGTCACAGTATTTTGTTACACAATAAACAGTGTGTCATGTTCGGCAGTCATTGTGAA

Function

symbol description
dera Predicted to enable deoxyribose-phosphate aldolase activity. Predicted to be involved in carbohydrate catabolic process and deoxyribonucleotide catabolic process. Predicted to be located in cytoplasm. Is expressed in several structures, including intermediate cell mass of mesoderm; liver; pronephric duct; retinal pigmented epithelium; and ventral mesoderm. Orthologous to human DERA (deoxyribose-phosphate aldolase).

NR:

description
PREDICTED: deoxyribose-phosphate aldolase

GO: NA

KEGG:

id description
K01619 deoC, DERA; deoxyribose-phosphate aldolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792221.1 True 1322 mRNA 0.55 9 25768737 25779615

Neighbor

gene id symbol gene type direction distance location
hmga2 hmga2 coding upstream 14922 25695881 ~ 25753815 (+)
lemd3 lemd3,LOC104964688,LOC106576661 coding upstream 128647 25621443 ~ 25640090 (+)
tmbim4 tmbim4 coding upstream 154292 25608506 ~ 25614445 (+)
cdnf LOC104964768 coding upstream 194715 25568539 ~ 25574022 (+)
prl2 LOC104964766,LOC103356682,LOC100697904 coding upstream 215736 25546940 ~ 25553001 (+)
il17ra1a NA coding downstream 366292 26145907 ~ 26158913 (+)
LOC120553199 LOC104965315 coding downstream 436526 26216141 ~ 26219357 (+)
cnot4b NA coding downstream 443174 26222789 ~ 26253935 (+)
braf braf coding downstream 607200 26386815 ~ 26427044 (+)
aebp2 LOC103362558,LOC104950851 coding downstream 1239747 27019362 ~ 27044417 (+)
G230415 NA non-coding upstream 46251 25721653 ~ 25722486 (+)
G230404 NA non-coding upstream 149478 25618202 ~ 25619259 (+)
G230401 NA non-coding upstream 152066 25595592 ~ 25616671 (+)
G230339 NA non-coding upstream 264301 25503664 ~ 25504436 (+)
G230337 NA non-coding upstream 268528 25499847 ~ 25500209 (+)
G230418 NA non-coding downstream 8991 25788606 ~ 25789256 (+)
LOC120553708 NA non-coding downstream 18374 25797989 ~ 25801309 (+)
G230488 NA non-coding downstream 275908 26055523 ~ 26055735 (+)
G230510 NA non-coding downstream 346417 26126032 ~ 26126398 (+)
G230520 NA non-coding downstream 391773 26171388 ~ 26173594 (+)
msrb3 msrb3 other upstream 105918 25641840 ~ 25662819 (+)
LOC120553523 NA other upstream 394741 25362882 ~ 25373996 (+)
G230148 LOC102781993,LOC101465723 other upstream 990479 24620812 ~ 24778258 (+)
LOC120553083 NA other upstream 1454030 24309542 ~ 24314707 (+)
LOC120553686 LOC105929833,LOC107382334 other upstream 1823097 23934300 ~ 23945640 (+)
LOC120553706 NA other downstream 30792 25810407 ~ 25812828 (+)
arhgef39 arhgef39 other downstream 258573 26038188 ~ 26106823 (+)
mrps33 mrps33,LOC106591474 other downstream 593099 26372714 ~ 26381109 (+)
LOC120553759 NA other downstream 913741 26693356 ~ 26971853 (+)
LOC120553194 NA other downstream 1289462 27069077 ~ 27072552 (+)

Expression


Co-expression Network