gxylt1b (gxylt1,LOC103355206,LOC103459445)


Basic Information

Item Value
gene id gxylt1b
gene name gxylt1,LOC103355206,LOC103459445
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15511849 ~ 15521235 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792223.1
TAGTGGCATAGCATGCCATTTGTGTGTAATCTTGTACATTCTTCCCACTCTGTTCTATTACACAAGACTATTCTATACTTATTCCTTcagatcaaacaaacaaacaaacaaccaaccaaccaaccaaccaaccaaccaaccaacaacaacaacaacaacaacaacaacaagtaaaTAAAGCTATTGTCATTGTTTCAAAAGCTTTAATAGTAAGAAATGTAGAGAAGGTTGCAGAGCCAGACCGCCAGAGGGCGTAATTACCACGCCTgataagttttattttttaaacgctGACCGGAAGTGCGTTACAATTGCGAGGAGCTTCGCAGTTATTATTTTTACCATACGCTAGTTTCTGTGTCATGACTTTAGCTCCAAGTTGCGTTTTCAAACTCCAAAATGCGGCGTTACATTCGTGCACTAATGTTGTGCACGGTGTTTGCCATGTTTTCGGGCTTGTATGtttacagtaaactgttttactCGGACGTGTCGGGCGGTGGAAACGGACCTAGAAGGGTTTTCATCCCACAGAGAGTCCCCGGAGGCAGGCGAGGTGCCGCGGACAAAACTGGGCCCCAAAGCCCACACTGGTACAATAGGTACATCATGCGTCAGCGGGGTCAGGGGGAGGCAGGTGGCGGCAGCGTTCAGAGCAGACCCGAACCTCCCATGCACCTGGCTGTGGTGGCCTGTGGCGAGAGGCTGGAGGAGACTCTCACCATGATCAAGTCTGCTGTGCTTTTCAGCATCAAGAGCCTCCACCTGCACATCTTTGCTGAAGATCAGCTACATGCCAGCTTCATTAAAGCTTTGGAGTCGTGGCCTGGTTTTATTCACTCCAGGTTCAACTACACAGTCTACTCCATCAGCTTCCCCAGTGAGAACGCAGCCGAGTGGAAGAAACTCTTCAAACCCTGCGCTTCTCAGAGGCTCTTCCTACCTCTGATCCTGAAGGATGTTGACTCAGTCGTGTATGTCGACTCAGACATCCTCTTCCTGCAGCCTGTAGACCACCTGTGGGCGTTCCTGTCCCAGTTTAATTCCTCCCAGTTGGCTGCTATGGCCCCGGAGCACGAGGAGCCCCGTATTGCCTGGTACAACCGCTTCGCCCGCCACCCCTTCTATGGCAGGACGGGCATCAACTCAGGGGTCATGTTAATGAACATGACAAGGATGAGAAACATGTTCTTTAAGAATGACATGACGTCTGTGGGGCTGCGTTGGGAGGAGCTGCTGATGCCTCTACTTCAGAAATACAAACTCAACATAACCTGGGGAGACCAGGACCTTCTCAATATCATTTTCCACCACAACCCTGAGTGCTTGCTGGAGTTTCCGTGCCAGTGGAATTATCGTCCTGATCATTGTATCTATGGCAGTAACTGTGCGTCAGCTGAAGAAGATGGCATCTACATACTGCATGGAAACAGAGGGGTTTACCACGACAACAAACAACCTGCCTTCAGGGCTGTTTACGAGGCCATACGAAAGTACTCTTTTGGTGCAGACCCAGTGACTTCTTTGTTGGATCCACTAGAAGAGGAGCTGTTGAAGACGACACACACTTATTGTGGTAAATCCCACGCGCTCCTTACCAAGAGACTGGCACACAGCCTGGCAAACATCAACAGAAAGGCCCCACGTGGACGGTGACAAAACTGAATCACAATGATGGGACGGAGGTCAAAAATAGAGACTCCGAGAGACTTTATCTTGAGTACAGGCTTGTTGTCCTTGAGCAAGAAACTAAACCCCCAGCAGGGATTTttgacagatatatatatatatatatatatatatatatatatatatatata
>XM_039792224.1
CTAGAAAGGAAAGACCTGCGAAACCTGTTAAGTGGGTGAGATGTATAAAATCTTAACAGAAATGTAAAGTATCAAACATACCAAAAATAGAATGAAAGCAGAAAGGCATAGGGATAATATATTGTAGAAtcaaaaacactaaaaatgTAAGCTGTGACAATCTGGGACAGCTTTgttttgttacattgttttcCACACTAAAAAACTGTCACACAgtatttaaattgttaaatagCATTTATCTAGTGGCATAGCATGCCATTTGTGTGTAATCTTGTACATTCTTCCCACTCTGTTCTATTACACAAGACTATTCTATACTTATTCCTTcagatcaaacaaacaaacaaacaaccaaccaaccaaccaaccaaccaaccaaccaacaacaacaacaacaacaacaacaacaagtaaaTAAAGCTATTGTCATTGTTTCAAAAGCTTTAATAGTAAGAAATGTAGAGAAGGTTGCAGAGCCAGACCGCCAGAGGGCGTAATTACCACGCCTgataagttttattttttaaacgctGACCGGAAGTGCGTTACAATTGCGAGGAGCTTCGCAGTTATTATTTTTACCATACGCTAGTTTCTGTGTCATGACTTTAGCTCCAAGTTGCGTTTTCAAACTCCAAAATGCGGCGTTACATTCGTGCACTAATGTTGTGCACGGTGTTTGCCATGTTTTCGGGCTTGTATGtttacagtaaactgttttactCGGACGTGTCGGGCGGTGGAAACGGACCTAGAAGGGTTTTCATCCCACAGAGAGTCCCCGGAGGCAGGCGAGGTGCCGCGGACAAAACTGGGCCCCAAAGCCCACACTGGTACAATAGGTACATCATGCGTCAGCGGGGTCAGGGGGAGGCAGGTGGCGGCAGCGTTCAGAGCAGACCCGAACCTCCCATGCACCTGGCTGTGGTGGCCTGTGGCGAGAGGCTGGAGGAGACTCTCACCATGATCAAGTCTGCTGTGCTTTTCAGCATCAAGAGCCTCCACCTGCACATCTTTGCTGAAGATCAGCTACATGCCAGCTTCATTAAAGCTTTGGAGTCGTGGCCTGGTTTTATTCACTCCAGGTTCAACTACACAGTCTACTCCATCAGCTTCCCCAGTGAGAACGCAGCCGAGTGGAAGAAACTCTTCAAACCCTGCGCTTCTCAGAGGCTCTTCCTACCTCTGATCCTGAAGGATGTTGACTCAGTCGTGTATGTCGACTCAGACATCCTCTTCCTGCAGCCTGTAGACCACCTGTGGGCGTTCCTGTCCCAGTTTAATTCCTCCCAGTTGGCTGCTATGGCCCCGGAGCACGAGGAGCCCCGTATTGCCTGGTACAACCGCTTCGCCCGCCACCCCTTCTATGGCAGGACGGGCATCAACTCAGGGGTCATGTTAATGAACATGACAAGGATGAGAAACATGTTCTTTAAGAATGACATGACGTCTGTGGGGCTGCGTTGGGAGGAGCTGCTGATGCCTCTACTTCAGAAATACAAACTCAACATAACCTGGGGAGACCAGGACCTTCTCAATATCATTTTCCACCACAACCCTGAGTGCTTGCTGGAGTTTCCGTGCCAGTGGAATTATCGTCCTGATCATTGTATCTATGGCAGTAACTGTGCGTCAGCTGAAGAAGATGGCATCTACATACTGCATGGAAACAGAGGGGTTTACCACGACAACAAACAACCTGCCTTCAGGGCTGTTTACGAGGCCATACGAAAGGGACCGAACTGCAAGCAAATGAGCCGCATAAAAAATGGTAATTCCCCTTTGATTTCCTCGGAGCATTGTAAAGGCTCCTTCATTATTGGGAAGACAGAAATTTCTACTGTAATCCCTGGTTATCGCTGGACGGTAAGCCTATAGCATAAAACTGACTCCAACCATGTGGACTGCTTTATGTTTTGCCcggctgaccaatcagattagATGTGGATTCCCTTCTGATCTCAGCATGCCTTGCGGATTTAGTTTTTAATTTATCCAGGGAAAGATATCCTCCAAGCCCAAATGCTGCCCAAAGCACCACTTTGCTTACTTACTGAGGGAATCTGATCAATTCCACTGGAACAGTAGGAGGCTAAGAGCTGTCCTCGGGGAGTTTTGATAGTAGTTTGGGATTTCAGCCTGCTCACTTTAAGTTTCAAAGCCCACTCCTCCTACCCTCCAGACAACCATCATCCCCGTGTTTCAGCTCTTTGAAGAAACAGGAGAGTACAAGTCATCTTACGAGTCTGCCTTCATATTCAGTACAATTccttgttttaaaatgtcctcgttatcgtgTGCTTTTTGTTTACTGAATGTCTCAACATGTAGGATCAATACATTTAAATTGAAGGGATCTTATTCTTTGGATTAAGAGAAAAGTGCTTTGGAATTTATCTTTAGATCATCGAAGcaaacaatacaatacatcaCACCAAATCCAACCAATGAATTGTTTTAT

Function

symbol description
gxylt1 Enables UDP-xylosyltransferase activity. Involved in O-glycan processing. Predicted to be integral component of membrane.

NR:

description
PREDICTED: glucoside xylosyltransferase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792223.1 False 1820 mRNA 0.48 7 15512092 15521235
XM_039792224.1 True 2464 mRNA 0.45 7 15511849 15520901

Neighbor

gene id symbol gene type direction distance location
zcrb1 zcrb1 coding upstream 18426 15491283 ~ 15493423 (+)
pus7l pus7l coding upstream 143730 15360929 ~ 15368119 (+)
LOC120553796 LOC104934096,LOC103355199 coding upstream 166124 15338839 ~ 15345725 (+)
fgl2a fgl2 coding upstream 255526 15246158 ~ 15256323 (+)
LOC120553461 NA coding upstream 757599 14750780 ~ 14754250 (+)
akap14 NA coding downstream 238076 15759311 ~ 15759832 (+)
avpr2l LOC103369361,LOC104965399,LOC107098425 coding downstream 241558 15762793 ~ 15764738 (+)
LOC120553452 NA coding downstream 248777 15770012 ~ 15772705 (+)
LOC120553449 LOC102291490,LOC101477496,LOC100701114,LOC102193524 coding downstream 255680 15776915 ~ 15789611 (+)
tfec tfec coding downstream 303109 15824344 ~ 15852844 (+)
G228065 NA non-coding upstream 221341 15290187 ~ 15290508 (+)
G227995 nampt,LOC102790888 non-coding upstream 345640 15154129 ~ 15166209 (+)
G227969 NA non-coding upstream 366651 15141212 ~ 15145198 (+)
G227972 znf800,LOC102791911 non-coding upstream 451015 15060004 ~ 15060834 (+)
G227970 NA non-coding upstream 454371 15054705 ~ 15057478 (+)
G228119 NA non-coding downstream 9896 15531131 ~ 15531439 (+)
G228128 cntn1 non-coding downstream 156120 15677355 ~ 15680269 (+)
G228130 NA non-coding downstream 159138 15680373 ~ 15681491 (+)
G228136 NA non-coding downstream 168673 15689908 ~ 15699902 (+)
LOC120553205 NA non-coding downstream 200289 15721524 ~ 15722242 (+)
yaf2 yaf2,LOC102236902 other upstream 671 15494677 ~ 15511178 (+)
prickle1b prickle1 other upstream 39962 15441985 ~ 15471887 (+)
lrrc17 LOC103355197,LOC103382847 other upstream 180671 15300522 ~ 15331178 (+)
LOC120553256 gsap,LOC102790605 other upstream 308808 15168604 ~ 15203041 (+)
LOC120553353 spam1,LOC103370765,LOC102199515,LOC101470336,LOC102310263 other upstream 1049375 14454593 ~ 14462474 (+)
tmem168a LOC103368481 other downstream 745901 16267136 ~ 16280061 (+)
cald1a LOC102212027,LOC102781594,LOC102298269,LOC103382882,LOC106941466,LOC103156466,LOC101472471,LOC106916645,LOC106525550,LOC107395349,LOC103356441 other downstream 1249823 16771058 ~ 16831243 (+)
stmp1 NA other downstream 1345075 16866310 ~ 16867796 (+)
morn2 morn2 other downstream 1359041 16880276 ~ 16916928 (+)
G228335 ahcyl2,LOC103371314,LOC107725924,LOC107656398 other downstream 1398428 16919663 ~ 16922823 (+)

Expression


Co-expression Network