lrig3 (lrig3)


Basic Information

Item Value
gene id lrig3
gene name lrig3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19546626 ~ 19569057 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792228.1
atgtgttcCTCTACGCAGGCTCGCAGTTTAGCAAGACTCGCCGTGGTTTTCCTACTGTTTGTGAAGCTCCAGCGTGGATCGGGTGCTAACGCAAGGACGTGTCCCCCTCCCTGCGTGTGTACTGAGGAGCTTTTGGACTGCAGTCGGCTGAAGAGGGGCCAAATTCCAGACACGATCCCGGAATGGACAGTTCAACTAGACCTGAGCCATAACAAATTGCAGGTGCTTGACGGCACTTTGTTTTCCAAACTACAACATCTAAGTGAAATAAAGCTGAACCACAATGAACTGGAGGCAATACCTGATTTGGGCCCTTATGCTTCAAACATCACAACACTCATTCTAGCAAACAACAGGATCACGAGGATCTCTGTGGAGCAGCTTAGGCCCTTCCTCGCTCTGGAAATGCTCGACCTCAGCAACAACAATattgtggaaataaaggccggCTCCTTCCCAGCTCTGCCTCTCAAGGACCTgtTCCTCAACAACAATCGTATCTCGTCACTCGAGACGGGCTGCTTCACCAACCTGTCCAGCAGTCTGCAGGTTCTTCGGCTCAACCGCAACCGGCTCTCCACCATCCCAGCTAAGATCTTCCAGTTGCCCAACCTCCAGCATCTggagTTGAGCAGGAACCGGGTTCGCAAAGTGGAGGGCCTGACCTTCCACGGTCTGCAAGCTCTTCGCTCCTTAAAAATGCAGAGAAACGGCCTGAGCCGCCTGATGGACGGAGCCTTCTGGGGCCTCGGCAAAATGGAAGTCCTGCAGCTGGACTACAACAACCTGACGGAGGTGAGTAAGGGCTGGCTCTACGGCCTGTTGACTCTGCAGAAGCTCCACCTCGGCCACAACGCCATCGGCAGGATCCAACCTGACGCCTGGGAGTTCTGCCAGAAACTCAGTGAGCTCAACCTCTCCTCCAACCATCTGTCCAGACTGGAGGAATCCAGCTTCGTAGGCCTCAGCCTGCTGGACGAGCTCCACATCGGAAACAACCGTGTGAGCTTTATTGCAGACGGAGCTTTCCGTGGCCTCTCCAACCTGCAGATGCTGGATCTCCAAAATAATGAAATCTCCTGGACCATTGAAGACATGAATggccctttctctgctttggaCAAGCTGAAAAAACTatTTCTGCAGGGGAACCAGATCCGCTCGGTGACCAAAAAGTCTTTCTCTGGCCTGGACGCGCTGCAGCACCTAGATCTGAGCAATAACGCCATCATGTCCATCCAAGCGAACGCCTTCTCTCAGATGAAGAACCTGCAGGAGCTGCGTCTGAATACCTCCAGTTTGCTGTGCGACTGCCAGCTAAAGTGGCTTCCCGTCTGGGTGGCAGAACAAACCTTCCTGCCCTGCGTCAACGCCAGCTGCGCCCACCCGCAGATGCTGAAGGGCAGGAGCGTGTTTGCCGTCAGCCAGGAGGAgtttgtgtgtgATGACTTCCCAAAGCCTCAAATCACTGTGCAGCCGGAGACCCAGTCAGCCCTCAAGAGCACCAACGTGACGTTCGTCTGCTCAGCAGCCAGCTCCAGCGACTCACCAATGACCTTTGCTTGGAAGAAAGACAATGAGGGCCTGAACGACGCGGAGATCTACAACCAGGCCCACTTGCGGGTGCAGAAAAGCGCAGGAGGCGAGACGGAGGTGACGGAGTACACAACCACCCTTCAGCTACGTAATGTGGAGTTCTCCAGCGAGGGAAAGTACCAGTGCGTCATCTCAAACCACTTTGGATCATCCTATTCAACAAAGGCCAGACTCACTGTCAACATGCTCCCTTCCTTCACCAAGATGCCAATGGACCTGAGTATCCGTGCTGGAGCAACAGCCAGGCTGGAATGTGCCGCCGTTGGTCACCCTTCCCCTCAGATTGCCTGGCAGAAAGACGGAGGCACCGACTTCCCTGCTGCCCGCGAACGCCGCATGCACGTCATGCCGGAGGACGACGTGTTTTTCATAGTGGACGTCAAGACAGAGGACATCGGCGTTTATAGCTGCACAGCTGCGAACACAGCTGGCACCGTTTCTGCAAATGCTACGCTAACTGTTCTAGAAACCCCTTCCTTCTTACGGCCCCTCATGGATCGCACTGTGGCCAAGGGCGAAACCGCTGTCCTCCAGTGCATAGCTGGTGGCAGTCCTCCCCCAAGGCTAAACTGGACCAAAGACGACAGCCCGCTGGTAGTGACCGAGCGCCATTTCTTCGCAGCAGCCAACCAGCTCCTCATCATCGTTGACGCTGCAGAGGCTGACGCAGGGAAGTACACCTGCGAGATGTCCAACGCGCTGGGCACGGAGAGGGGTAACGTTCGGCTGGCTGTCATACCAAATCCCAACTGCGACTCTGGAGTGCAGGGCGGCGTGGGAGTCGGCATCGCGGGCGGGGTTGGGTCAGACGATGATGGGTGGACCACAGTGGGAATCGTCATCATAGCTGTGGTGTGCTGTGTGGTGGGCACTTCACTGGTTTGGGTGGTCATCATCTACCACACACGGCGACGCAATGAGGACTGCAGCGTCACCAACACAGATGAGACCAACCTGCCTGGCGACATTCCCAGCTACCTGTCCTCCCAGGGCACACTCGCTGACCGTCAGGACGGCTACATCCCATCAGAGAGTGGCAGCAGCCATCAGTATATGGCTTCGTCTATTAGCGGCTTCTACCTGCAGCCTAAAGACATGAATGGTTTTTGTCAGCTGGATACAGGAAGTGAAGCCGACATGGAGGCAGCCATCGATCCTCTCCTCTGCCATTATCAAGGTCCAATCAGCTCCCTGCTTCGCCAGGACAACATCTACTCCGCTGACCCATCGGAAGTCTTCACAGgCTGTTCTATCGACCAAAGGCCCGTCTGCATGGACTCTTACAGTGGCAGCCTGACCAGCTCTAAAATGAGGGACTACTTCCTGTCTGAGCATTTTGacctctgctcctcctctgtcCTGATGCAGCTCCCCAACGCCAGTCTCCCTCACGGCCCCTCTCACCAGCAGAGTGACCGCCGACCATCCATGGAGGAGGGAGAAGCCATCGACTACGGGAGACCTCATGAATGTCTTCCCCCCTCCAACACCTTCATGGGAACATTTGGGAAAGCTCCCTGGAGGCCTCATAAGGACCAATACACAGGCTTTGCCCCGCCGTCGGTGACGCGTAACGGAATAACTCTGCATGAGAATCCTTACATCGCTCCAGATGCCGATTCAGACCTCGAGGACAACGGTCTCGCCAAGGACTCGGCGTCAGAGCAGAGCAACAGCGTTTATGAACAGCTGTATGACAGCAAAAGGACTGATCCCATCCCACAGCGCAGAACGAGCACTTAGCTCAGTGACTGTTTTTAATGAAGAGGACGACCAAAAAAATAAGAACATTTCTACCTCACTGAATGGACACTTTTGCAATAAAGGACTCCTCAAATGTGCAACGAGTGAATGTAACGGACACTTTGATGTTCCAAGAGAAAAGTAAAAAGGAGCATATTAGCAGCTGTTCTTCAAGGACACAGCTTCAGTTAAATATAgatgaatatataaatatacgtttttttatataaagtttattatattttgtaaatTGTATATAAACAGATTCCATTATTTTTGCTTA

Function

symbol description
lrig3 Is expressed in brain; eye; pharyngeal arch 3-7; presumptive shield; and shield. Orthologous to human LRIG3 (leucine rich repeats and immunoglobulin like domains 3).

NR:

description
PREDICTED: leucine-rich repeats and immunoglobulin-like domains protein 3

GO: NA

KEGG:

id description
K24610 LRIG1_3; leucine-rich repeats and immunoglobulin-like domains protein 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792228.1 True 3622 mRNA 0.53 19 19546626 19569057

Neighbor

gene id symbol gene type direction distance location
rpap3 NA coding downstream 42320 19495419 ~ 19504306 (-)
trnal-cag_24 NA coding downstream 93598 19452946 ~ 19453028 (-)
trnal-cag_23 NA coding downstream 94076 19452469 ~ 19452550 (-)
trnal-cag_22 NA coding downstream 94553 19451988 ~ 19452073 (-)
trnal-cag_21 NA coding downstream 98480 19448064 ~ 19448146 (-)
LOC120553212 fam19a2,LOC103364248 coding upstream 164009 19733066 ~ 19806755 (-)
LOC120553419 timp3,LOC103152565 coding upstream 414422 19983479 ~ 20000522 (-)
cep83 cep83 coding upstream 690968 20260025 ~ 20272144 (-)
hcfc2 hcfc2 coding upstream 703469 20272526 ~ 20286587 (-)
mcm10 mcm10,LOC102783079 coding upstream 825009 20394066 ~ 20409676 (-)
G228882 NA non-coding downstream 32192 19514103 ~ 19514434 (-)
G228881 atp23,LOC106609469 non-coding downstream 39066 19506683 ~ 19507560 (-)
G228880 NA non-coding downstream 47016 19499238 ~ 19499610 (-)
G228871 NA non-coding downstream 63473 19482867 ~ 19483153 (-)
G228870 NA non-coding downstream 64009 19482172 ~ 19482617 (-)
LOC120553214 NA non-coding upstream 148165 19717222 ~ 19718412 (-)
G228946 LOC103364246,LOC103152567,LOC106913527,LOC103459763,LOC106945279 non-coding upstream 283907 19852964 ~ 19905943 (-)
G228949 NA non-coding upstream 289046 19858103 ~ 19858863 (-)
G228947 LOC103152567,LOC106913527,LOC106945279,LOC106922717,LOC102300237 non-coding upstream 308040 19877097 ~ 19882079 (-)
G229062 NA non-coding upstream 786579 20355636 ~ 20357563 (-)
sox5 sox5 other downstream 276290 19028609 ~ 19270336 (-)
LOC120553633 slc2a13,LOC103369283 other downstream 723536 18738396 ~ 18823090 (-)
gramd4a gramd4,LOC103376144 other downstream 1125219 18363259 ~ 18421407 (-)
tafa5a fam19a5,LOC103356475,LOC102793695 other downstream 1445631 17830616 ~ 18100995 (-)
G228465 NA other downstream 2244428 17295122 ~ 17302198 (-)
G228934 fam19a2,LOC103364248 other upstream 164045 19733102 ~ 19807098 (-)
etv6 etv6 other upstream 237757 19806814 ~ 19839350 (-)
rerg rerg other upstream 497838 20066895 ~ 20122393 (-)
cdk17 LOC104930593 other upstream 732035 20301092 ~ 20354627 (-)
G229199 NA other upstream 1388600 20957657 ~ 20958220 (-)

Expression


Co-expression Network