tnnt2c (LOC102777397)


Basic Information

Item Value
gene id tnnt2c
gene name LOC102777397
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7895545 ~ 7897483 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792247.1
TGGAGACTTTGGTCAGCCTATCGTCACATGGTGAAGGCAAACCCTTAAAAAACCTCCACGTTGCACGCCCGAGACCCCAGTCTTCTCTTGTGTGCAACACACCAGCTGGTCTTGGTTGTTCATCCTGCTTTCTCTACCCTAGAAGGCCTCCGAGGTAACATCATGTCAGACACTGAGGAAATTGTGGAGGAGTacgaagaagaggaggaggtgaatgaggaggaagaagaagttGTAGAAGAGGAGCTGGAGGACGATGAAGCAGAGACGAAAGAAAAGCATGCAGAGGAGAACGAGCAGGAGGAGGACTCCAAATGGCGGCCTAAGACAACTTATGTGCCCAACATTGCTCCTCCGAAGCTCCCTGATGGCGAGAAGGTGGATTTCGATGACCTGCACCGCAAGAGAGTAGAAAAGGATTTCAACGACCTCCAGACCCTGATCGAGTCGCATTTCTCCACCCGtcagaaagaggaggaagagctgGTCGCGCTGCGTAACCGCATTGAGCGCCGTCGATCAGACAGGGCAGAACAACAACGTGTCCGCTCCGAGGAGGAACGTGAACGGCAAACACGTCTAGCCGGGGAGAAGACAAGGCGTGAGGAGGAGGCAGCCAAACTGCGCGCCGACGAGGAggcaaagaagaagatgatATTCACCAACAAGTCCTTTGGCGGCTACCTGCAGAAGGTGGACCAGAAGAAGGGCAAGAAGCTGACAGCAcgggaggagaaaaagaaggcCCTGATGGAGCGCCGGAAGCCACTCAACATCGACCACCTGAACCAGGAGAAGCTTGCGGAGAAGGCGCAGGACCTGTGGCAGTGGCTCCACCAGCTGCATGCAGAAAAGTTTGAGCTGGCCGAAAAGCTCAAGAGGCAGAAGTACGACATCTACGTGCTCCGAAACCGAGTCAGCGACCACCAGAGGGGCTCCAAAGCATCCAAGACCTCCCGCGGGGCCAAGGGCAAGTCTGGTTCCTGGAAGTAAACTAGACTGCCTCTAGTTGTTTCTGGACTATTTATCTCCTTTTTACAACATGTACCATAAAAGCTATCCTATGGATTGTAGGGCTGAATGATTTGGGGGGGGAACTCTAATTGTGATTTTTCTGCCAGacattgcgattgcgattcacgataacaaaaaaaaagtttagctaaagttcaatattcactgtgtaacagataaaacatgtctTGGAGtattataacatgagacaccatcaaaactgctctatATTCTTATGTAATGATGAGAACATAGATATGAGCTGCCTGAAATAAGTGTTTTTCTATTAATAAACATGGAACATTGAACAGTCAAACAAagaacatttatcacaaaagctaaagttataataataataataaaaacaattccaataagAATATCAGTACTTGTTTTGTAAactaaaatgtctgaaatgcTTCAGTTCATTAGCAGCatctacatattgcaccttctaccattatgttaaataaaataatacaaaataataaaagaaatccaCTGAAAGTgggacatttctgtaaacaatctgtGACATTATTTCAGCATCTATCTTATGAAAAAACAGTGGATATAACAATaataagaggaataaaaaatgttaaaccaaatATGACACCAAACATTTaactaaatattgcacattTGATTAATCGCGGTCGTCACGATTAGCTAATagcattttttcaaatctcGATTTCGATTATAAAACGATTAATCTTTTAGCCCCAATGGATTGTGAGTGGATTTGAGGGGGAACTCAAGTACATGAAGTTAATCAAGCCATAACATATTGAATGATATAAATGGTATACATATCTGATTGTTCTAACTTTTTCATACTGCTATTCATCTGTTTACAAGCTGTAGACTTTATTAAATCTGATGGAATGTGGGGTGGTGTTGATTTCCCTACTCAACTAGA

Function

NR:

description
troponin T, cardiac muscle isoforms-like isoform X2

GO:

id name namespace
GO:0006937 regulation of muscle contraction biological_process
GO:0005861 troponin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792247.1 True 1939 mRNA 0.43 1 7895545 7897483

Neighbor

gene id symbol gene type direction distance location
LOC120553463 LOC103356656 coding upstream 8020 7869761 ~ 7887525 (+)
LOC120553589 parpbp,LOC102779589 coding upstream 289707 7592879 ~ 7605838 (+)
LOC120553155 pah coding upstream 333340 7546428 ~ 7562205 (+)
pah pah coding upstream 371126 7509964 ~ 7524419 (+)
metap2a metap2,LOC104945620,LOC102784010,LOC102294382 coding upstream 628095 7257270 ~ 7267450 (+)
ppfibp1a LOC103362093,LOC102299773,LOC102192229 coding downstream 80594 7978077 ~ 8012811 (+)
myf6 myf6 coding downstream 564841 8462324 ~ 8464094 (+)
myf5 myf5 coding downstream 571178 8468661 ~ 8471034 (+)
acss3 acss3 coding downstream 618105 8515588 ~ 8565355 (+)
washc3 ccdc53 coding downstream 905065 8802548 ~ 8807170 (+)
G226452 igf1 non-coding upstream 187975 7616188 ~ 7707570 (+)
G226352 NA non-coding upstream 549383 7335054 ~ 7346162 (+)
G226319 usp44 non-coding upstream 623229 7272077 ~ 7272316 (+)
G226318 NA non-coding upstream 623838 7271317 ~ 7271707 (+)
G226317 NA non-coding upstream 624792 7269104 ~ 7270753 (+)
G226505 NA non-coding downstream 126878 8024361 ~ 8028661 (+)
G226507 syt1,LOC106518246,LOC100695586 non-coding downstream 150296 8047779 ~ 8057617 (+)
G226515 NA non-coding downstream 362850 8260333 ~ 8306828 (+)
G226554 NA non-coding downstream 444147 8341630 ~ 8408659 (+)
G226556 ppp1r12a non-coding downstream 458847 8356330 ~ 8359282 (+)
LOC120553156 LOC104945813 other upstream 326242 7566655 ~ 7569303 (+)
LOC120553154 LOC104945813,LOC103356648 other upstream 363468 7525892 ~ 7532077 (+)
ascl1a ascl1 other upstream 469291 7423618 ~ 7426254 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other upstream 495146 7370442 ~ 7400399 (+)
klhl42 klhl42 other upstream 527329 7363325 ~ 7368216 (+)
rps16 rps16,LOC103382554 other downstream 529152 8426635 ~ 8432697 (+)
lhfpl3 lhfpl3,LOC101483460 other downstream 1237111 9134594 ~ 9173220 (+)
ndufb2 ndufb2,LOC102790702 other downstream 1339743 9237226 ~ 9241349 (+)
G227121 kera other downstream 2799771 10697254 ~ 10699718 (+)
G227141 dcn,LOC103382665 other downstream 2834586 10732069 ~ 10737503 (+)

Expression


Co-expression Network