slc38a4 (slc38a4)


Basic Information

Item Value
gene id slc38a4
gene name slc38a4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21518625 ~ 21571113 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792248.1
TGAGACACAAAACAGCTGCAGCCGCTCGCCCATTCACCTGTCCTTCATCTTGTTTAAGAATACATTTATTCCAAAAGAAAGTAAAGGAACAATCCGGATACCAATTtaaggattttttatttatttttattttttatgaaGTCTTTTGTAACAACTTCTAGCAGAGGTTACAGAAGAAGCACATCGACGCCTTGTGAATACCAAACGCTGAAATACTGAAAACCGAACTTCTCCGCCTCTCGCCCTGCCGCGCACCACTATGCCGGGAGCCGTGGATCGTATGGAGCTAAGTAAAGTCTCCACAGAGGCTGATGATGACAGCACCGACAGCCTGGATGACCGCTTCACAGAGCCCATCGACTCTGAGAAGGCCACCATTGACAGTCAGTTTATGGATGACAATGAGGACGGAGAAAGCCAGAAGTTCCTGTCAAATGGtttgatgaagaagaagaaatatgaGGAATACCATGAAGAATATCATCCCGGCCACACCTCCTTCGGGATGTCTGTGTTCAACTTGAGCAACGCTATCATGGGCAGCGGCATCCTGGGCCTGTCCTACGCCATGGCAAACACCGGCATTGTGCTCTTTACAATCCTCCTCGTCGCTGTGGCCAGCCTCTCCTTATATTCTGTAcatcttctccttatgacaGCTAAAGAAGGAGGATCCCTCATCTATGAGAAGCTGGGAGAGAGAGCATTTGGTTGGCCCGGGAAAATGGCAGCATTCGGATCCATAATTATGCAGAATATTGGAGCCATGTCCAGCTACCTCTTTATCGTGAAGTATGAGCTACCTGAAGTGATAAGAGCCTTCTTGGGTTTAGATGAAATCtctggTGAATGGTACCTGAACGGGAACTACCTGGTGGTGTTTGTGTCCATTGGAATCATTCTGCCTTTATCGATCCTTAAAAATCTGGGCTACCTGGGCTACACCAGCGGCTTTTCCCTTTCCTGCATGGTCTTCTTCCTGGGTGTGgTGATCTACAAGAAGACCCAGCTGCCCTGCCCTCTTCCTTTCTTTTACCACCACTCAGCCAACCTCAGCATGAACGCCACAGACATACAGGGGTTGTACCCGCTAAACAACTCGGCGCACATAGATTTCTCCCGGGCCGACGTTTCCCCGGCTGTGCTCGGCACCCACGACGGCCACCACTCCACCGGCGTCCACGTCGAGCCTCACCCCAACGACGAGGAGATGTGCACGCCCAAATACTTTGTCTTCAACTCACAGACGGCGTACACCGTGCCCATCCTGGCCTTCGCCTTTGTCTGCCATCCCGAAGTGTTGCCTATCTACAGTGAGCTGAAAGATCGCAGCCGGAAAAAGATGCAGAACGTCTCCAACCTGTCCATCCTGACTATGCTCATCATGTACATGCTGTCAGCCCTGTTTGGCTACCTCACCTTCTATGACAACGTAGAGGACGAGTTGCTCCACACCTTCACCAAAGTGTATAAGTTTGACacgttgctgctgctggtgcgTTTGGCTGTTCTCACTGCCGTCACTCTGACTGTCCCCATTGTGCTGTTCCCTatcCGCACTTCCATCAACACACTGCTGTTCAGCAATCGAGACTTCAGCTGGGCTCGCCACATGCTGATTGCCGCCGGCATCCTGGCCTTCAACAACATGTTGGTCATCTTCGTCCCCACCATCAGGGACATCTTCGGTTTCATCGgttcCTCTGCAGCCACTATGCTCATCTTTATTCTACCTGCTGCCTTTTACATCCGCCTGGTCAAATCCGTGCCGTTCCGCTCCCCGCAGAAAATCGGGGCGGCCGTCTTCCTAGTCGTGGGAATCGTCTTCATGATTGGCAGCTTGTCACTCATCGTCCTCGACTGGGTCCACAACCCCCCAGGCTCCAGCGGCGGTCACTAAGCTCCTTCTTCCCTCCTCAGATTCACATTTGACAGTGCAGCaaccaccccctcccccccttcatCAAATCACAAACATCAATTATAAAACCCCTCAACATATGGACATAATATGCTGCATAGAATATCACTGGAGGGAGACTTTTTTGGCTTGGTTTctattttgttgttgctgtaaaaGTTCACAACGCAAACGAGAGAatcaaaaaaaaccaaaaaaacagagAGGGATCCGGTTTGCCACAAAGA
>XM_039792250.1
AAATTTCCACTCAGTCTTCTCGCTTGTTAAATGGAAAGGGTCTCCAACTCTTGTCTCCACTAAGTCCGCCTGCTAGCTGCTGCAGCTGTCCGCCTCCACCGAAACATTAGGTCTTTTGTAACAACTTCTAGCAGAGGTTACAGAAGAAGCACATCGACGCCTTGTGAATACCAAACGCTGAAATACTGAAAACCGAACTTCTCCGCCTCTCGCCCTGCCGCGCACCACTATGCCGGGAGCCGTGGATCGTATGGAGCTAAGTAAAGTCTCCACAGAGGCTGATGATGACAGCACCGACAGCCTGGATGACCGCTTCACAGAGCCCATCGACTCTGAGAAGGCCACCATTGACAGTCAGTTTATGGATGACAATGAGGACGGAGAAAGCCAGAAGTTCCTGTCAAATGGtttgatgaagaagaagaaatatgaGGAATACCATGAAGAATATCATCCCGGCCACACCTCCTTCGGGATGTCTGTGTTCAACTTGAGCAACGCTATCATGGGCAGCGGCATCCTGGGCCTGTCCTACGCCATGGCAAACACCGGCATTGTGCTCTTTACAATCCTCCTCGTCGCTGTGGCCAGCCTCTCCTTATATTCTGTAcatcttctccttatgacaGCTAAAGAAGGAGGATCCCTCATCTATGAGAAGCTGGGAGAGAGAGCATTTGGTTGGCCCGGGAAAATGGCAGCATTCGGATCCATAATTATGCAGAATATTGGAGCCATGTCCAGCTACCTCTTTATCGTGAAGTATGAGCTACCTGAAGTGATAAGAGCCTTCTTGGGTTTAGATGAAATCtctggTGAATGGTACCTGAACGGGAACTACCTGGTGGTGTTTGTGTCCATTGGAATCATTCTGCCTTTATCGATCCTTAAAAATCTGGGCTACCTGGGCTACACCAGCGGCTTTTCCCTTTCCTGCATGGTCTTCTTCCTGGGTGTGgTGATCTACAAGAAGACCCAGCTGCCCTGCCCTCTTCCTTTCTTTTACCACCACTCAGCCAACCTCAGCATGAACGCCACAGACATACAGGGGTTGTACCCGCTAAACAACTCGGCGCACATAGATTTCTCCCGGGCCGACGTTTCCCCGGCTGTGCTCGGCACCCACGACGGCCACCACTCCACCGGCGTCCACGTCGAGCCTCACCCCAACGACGAGGAGATGTGCACGCCCAAATACTTTGTCTTCAACTCACAGACGGCGTACACCGTGCCCATCCTGGCCTTCGCCTTTGTCTGCCATCCCGAAGTGTTGCCTATCTACAGTGAGCTGAAAGATCGCAGCCGGAAAAAGATGCAGAACGTCTCCAACCTGTCCATCCTGACTATGCTCATCATGTACATGCTGTCAGCCCTGTTTGGCTACCTCACCTTCTATGACAACGTAGAGGACGAGTTGCTCCACACCTTCACCAAAGTGTATAAGTTTGACacgttgctgctgctggtgcgTTTGGCTGTTCTCACTGCCGTCACTCTGACTGTCCCCATTGTGCTGTTCCCTatcCGCACTTCCATCAACACACTGCTGTTCAGCAATCGAGACTTCAGCTGGGCTCGCCACATGCTGATTGCCGCCGGCATCCTGGCCTTCAACAACATGTTGGTCATCTTCGTCCCCACCATCAGGGACATCTTCGGTTTCATCGgttcCTCTGCAGCCACTATGCTCATCTTTATTCTACCTGCTGCCTTTTACATCCGCCTGGTCAAATCCGTGCCGTTCCGCTCCCCGCAGAAAATCGGGGCGGCCGTCTTCCTAGTCGTGGGAATCGTCTTCATGATTGGCAGCTTGTCACTCATCGTCCTCGACTGGGTCCACAACCCCCCAGGCTCCAGCGGCGGTCACTAAGCTCCTTCTTCCCTCCTCAGATTCACATTTGACAGTGCAGCaaccaccccctcccccccttcatCAAATCACAAACATCAATTATAAAACCCCTCAACATATGGACATAATATGCTGCATAGAATATCACTGGAGGGAGACTTTTTTGGCTTGGTTTctattttgttgttgctgtaaaaGTTCACAACGCAAACGAGAGAatcaaaaaaaaccaaaaaaacagagAGGGATCCGGTTTGCCACAAAGA

Function

symbol description
slc38a4 Predicted to enable amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in liver. Orthologous to human SLC38A4 (solute carrier family 38 member 4).

NR:

description
PREDICTED: sodium-coupled neutral amino acid transporter 4

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14991 SLC38A4, SNAT4; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792248.1 True 2148 mRNA 0.50 16 21518625 21550067
XM_039792250.1 False 2118 mRNA 0.51 16 21518625 21571113

Neighbor

gene id symbol gene type direction distance location
gas2l3 gas2l3 coding downstream 153517 21335537 ~ 21365108 (-)
med21 med21,LOC102798687 coding downstream 217369 21295513 ~ 21301256 (-)
LOC120553384 stk38l coding downstream 225389 21269874 ~ 21293236 (-)
LOC120553569 arntl2,LOC100698791,LOC102799561,LOC102199297,LOC101476868,LOC102299859 coding downstream 256923 21234254 ~ 21261702 (-)
slc13a4 slc13a4 coding downstream 334769 21153201 ~ 21183856 (-)
LOC120553490 ano4,LOC102780176 coding upstream 113097 21684210 ~ 21753271 (-)
LOC120553085 LOC103357120 coding upstream 245069 21816182 ~ 21827934 (-)
selenoo2 LOC106935628,LOC103357121,LOC107081058 coding upstream 257898 21829011 ~ 21836596 (-)
apex1 apex1 coding upstream 319497 21890610 ~ 21894722 (-)
si:ch211-214j24.10 LOC103357125,LOC104922658 coding upstream 357126 21928239 ~ 21935396 (-)
G229351 scaf11,LOC102797309 non-coding downstream 65473 21450463 ~ 21453152 (-)
G229296 NA non-coding downstream 253813 21264501 ~ 21264812 (-)
G229248 NA non-coding downstream 319366 21198468 ~ 21199259 (-)
G229235 NA non-coding downstream 456189 21019259 ~ 21062436 (-)
G229172 NA non-coding downstream 651096 20867300 ~ 20867529 (-)
G229390 NA non-coding upstream 71402 21642515 ~ 21642768 (-)
G229392 NA non-coding upstream 84789 21655902 ~ 21656162 (-)
G229413 NA non-coding upstream 110447 21681560 ~ 21682539 (-)
LOC120553093 NA non-coding upstream 205920 21777033 ~ 21777676 (-)
G229527 LOC108228952,LOC107098074,LOC105922964,LOC106609550,LOC103375704 non-coding upstream 283270 21854383 ~ 21856289 (-)
slc38a2 slc38a2 other downstream 44023 21461076 ~ 21474602 (-)
ptprz1b NA other downstream 373092 21063691 ~ 21145533 (-)
G229199 NA other downstream 560405 20957657 ~ 20958220 (-)
cdk17 LOC104930593 other downstream 1163998 20301092 ~ 20354627 (-)
rerg rerg other downstream 1396232 20066895 ~ 20122393 (-)
LOC120553090 NA other upstream 199975 21771088 ~ 21811097 (-)
G229716 NA other upstream 1533647 23104760 ~ 23239573 (-)
glipr1a NA other upstream 1632655 23203768 ~ 23210497 (-)
LOC120553170 NA other upstream 2119406 23690519 ~ 23711804 (-)
G229907 NA other upstream 2128584 23699697 ~ 23700198 (-)

Expression


Co-expression Network