dclre1c (dclre1c,LOC106595997)


Basic Information

Item Value
gene id dclre1c
gene name dclre1c,LOC106595997
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7089340 ~ 7100004 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792272.1
AAACAAACGACGAAGAAGAGTCACTGAAATTGATGGGCGGGACAAACAAACAGGCGATGTCAACAAAATAGCTGTCTGTCTATCCGCTGGAAACAATGCTTGATTAATTTAACACGATACCACCAACCGGTTCCTCgcattaacagtctatggttccgCGTAAAGATGAGTTCATTTGCAGGTCGAATGAAGGAGTATCCCACCCTTTCTCTGGACCGGTTCGACCGGGAGAACTTACATTCCCGGGCATATTTCCTCTCCCACTGTCACAAAGATCACATGAAAGGACTAAAAGGACCAATACTGAAGAGAAAACTGCAGTTCAGTCGTACAGTCAGGCTTTACTGCTCCTTCGTGACCAAAGAACTTCTGCTGAGCAATCCCAAGTACGCTTTCTGGGAGGAATACATTGTTCCTTTAGAGCTAGAGAGCCCAACTCAGATATCTCTGGTTGACGAGGCATCTGGAGAGAAAGAAGAGATTGTGGTCACGTTGCTTCCTGCAGGCCACTGTCCCGGCTCTGTTATgTTCCTGTTTGAGGGTTCCCGTGGAAACGTTCTGTATACAGGAGACTTCAGGTTGGCTGCTGGTGACGTCTCGAGAATAGAACATCTGCACTCTGGCAGCAGAGTGAAGGATATTCAGAGTGTTTATCTGGACTCCACTTTCTATGACCCACGATTCTACCAGATTCCTACTCGGgagGTCTGTCTGAACGGTATCTCAGAGCTTGTTGGGAGCTGGATCAGTAAGAGTTCATATCATGTTGTGTGGCTCAACTGTAAAGCTGCGTATGGATATGAATATCTGTTTACCAACCTGGGAGAGGAGTTcaacacacagATTCATGTCAAAAATCTGGCGATGTTCAAGAAGATGCCGGAGATCCTGAACTACGTGACGACTGACCGAAGGACACAGATCCATGCCTGTCGACACCCTAGGGATGAGGAGTTTTTCCAAGGCAGCCGGCTGCCGTGTGGCTGCACAGCCTCTGACGGGACTCCTCTTAGTATCATCAGCATCAAACCGTCCACCATGTGGTTCGGAGAGAGAATGAAGAAAACCAACGTTATAATAAAaaCAGGAGCCAGTTCCTTTAGAGCCTGCTTCAGTTTTCACTCCTCCTACTCAgagATTAAAAACTTCCTCTCCTACCTCCAACCAGTCAACATATACCCCAGTGTTATCCCTATTGGTCGGACCCTCACTGAAGTTACACAAATGCTGAAGCTGATGTGTAGAAACCAGTCTGATCAAGCAGCGTCTATATACAAACCTCTGGGAGTCCTCAAACGCGGCATAGTGGAGCAACCTACATACAATTCAGACAGCGATGACGGGCTGTTTGAGCAGCTGGACCTGGCACCAGTGAGGAAGAAGATGGCGCTGAACCGAGACACAAAAAACGTGAAAGCTCAGAGTCCTCAGAAGACAGCGGCCCCTGTGTCTGTGGAGGAGTCTTTCCCTCTGACGGTCGCAGACGCGCAGCCTGTCGCTCGCAACTATGTGGACTGCACCGAGTCcaatgatgaagaggaagatgaggggggggaggaggaggagaatgagGGAAAGGAGGATACAAAACTGACTAAGGAGGAGGTGAACAGGACGATAAAGGGAACTGAGAAAAAGGTGATTGAGGTCGAAGGAAGTGGCTCCTCTAATCCTCCGAAATGGGAGGACTTCTTCACTACGGAAACGCTGACTGACAGCCAGAACAGCCTCACCAGCCAATTACAGTCCTGCTGCTCTGTCCCGAGCTCCTCCCCCTCTAAAACGACTGGTTCACAGACCCCAGATCTGTTCAGCGATGAGGAGGAAACCCCCGATAACTTCAGTCTGACCCTGTCCGCCTCTCTGTCAAATCATTCCTCCCAGAACCAGGACTCGTATTTACCTGACACTCTGATCCTCCAAACAGAGCAGAGGGGGCGGGAACAAGGAGACTCTAGGACCAATACCGTTTCTCTGGAGAAGGAGAGCAACAGCCAAAACATCCAATCAGAGCTGGAAGAGCTCTCAGAGTCTCAGGCCTCGTCGGACTTTGATATTCCCTGCACGCCAGAGTCCAAAATACCACAAACTGATGAACTGTCGCAGTTGTACAGGAAGCTGGCGTCAGGAGACGAAGTTGTCATCAGAAAGGGAAGTCAGGGCTCCATGTGAAGGAATGTTAAAGGACATTTTTGGTGGATTTTATCCACCTATATGCTGCAAGATTACTGGTTCATGTGTGTGATAAGCACATAACTTCATGAACTTCTATAATACCTTACATGCCTTAAAGTGAGACCATTCCTCTCCAGTCTCAGTCGAACCTCCAAACCACACAAACCTCAGTATGTAAAGTAACCCACACAACATTTATTCCAATGCACTTTAAGTTCCCCGGTGCCCTACATACATTAATGCACCTGTGCACTGCACAGCTGACGCTCCATTTTTGTTGACAGTTTGTGGTTTGTTCTGTTAAACATTTCAAGGATCAAGTAGGTGACGTTTTTGTATCAAATCAGAAATCTTTGTGTCCTGaaccaaattaaaaatatttcaaataaaCAGCATTTTAGTAAACCTTGAAA

Function

symbol description
dclre1c Predicted to enable 5'-3' exodeoxyribonuclease activity and damaged DNA binding activity. Predicted to be involved in double-strand break repair via nonhomologous end joining; interstrand cross-link repair; and protection from non-homologous end joining at telomere. Predicted to act upstream of or within DNA recombination and DNA repair. Predicted to be located in nucleus. Predicted to be part of nonhomologous end joining complex. Human ortholog(s) of this gene implicated in Omenn syndrome; common variable immunodeficiency; severe combined immunodeficiency; and severe combined immunodeficiency with sensitivity to ionizing radiation. Orthologous to human DCLRE1C (DNA cross-link repair 1C).

NR:

description
PREDICTED: protein artemis

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K10887 DCLRE1C, ARTEMIS, SCIDA; DNA cross-link repair 1C protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792272.1 True 2588 mRNA 0.48 15 7089340 7100004

Neighbor

gene id symbol gene type direction distance location
cd9b LOC103364503,LOC102202019,LOC101471915,LOC102790892,LOC100690342,LOC102311668 coding upstream 16337 7051855 ~ 7073003 (+)
LOC120553268 NA coding upstream 77060 6976407 ~ 7012280 (+)
LOC120553270 NA coding upstream 93752 6976332 ~ 6995588 (+)
gnsa gns,LOC102788091 coding upstream 354931 6719108 ~ 6734409 (+)
sfmbt2 sfmbt2 coding upstream 452659 6579112 ~ 6636681 (+)
lamb1b lamb1,LOC103364103 coding downstream 15958 7115962 ~ 7144005 (+)
trnaw-cca_35 NA coding downstream 47265 7147269 ~ 7147340 (+)
vezt vezt coding downstream 140848 7240852 ~ 7255885 (+)
metap2a metap2,LOC104945620,LOC102784010,LOC102294382 coding downstream 157266 7257270 ~ 7267450 (+)
pah pah coding downstream 409960 7509964 ~ 7524419 (+)
LOC120553621 NA non-coding upstream 588280 6429094 ~ 6501060 (+)
LOC120553126 NA non-coding upstream 799441 6183044 ~ 6289899 (+)
G226097 NA non-coding upstream 991432 6097678 ~ 6097908 (+)
G226085 NA non-coding upstream 1169926 5919094 ~ 5919414 (+)
G226042 NA non-coding upstream 1312907 5750128 ~ 5776433 (+)
G226292 eri1,LOC102785739 non-coding downstream 57486 7157490 ~ 7157887 (+)
G226306 ndufa12 non-coding downstream 113388 7213392 ~ 7216386 (+)
G226316 NA non-coding downstream 167505 7267509 ~ 7268758 (+)
G226317 NA non-coding downstream 169100 7269104 ~ 7270753 (+)
G226318 NA non-coding downstream 171313 7271317 ~ 7271707 (+)
prkcq prkcq,LOC102789446 other upstream 402701 6660520 ~ 6686639 (+)
abcc9 abcc9,LOC107387088 other upstream 1715703 5281258 ~ 5373637 (+)
G225894 NA other upstream 2431371 4657444 ~ 4657969 (+)
LOC120553793 NA other upstream 3150386 3935674 ~ 3938954 (+)
LOC120553144 rap1b,LOC101070080,LOC100707998,LOC103368175,LOC102210937 other upstream 3248166 3814481 ~ 3841174 (+)
snrpf snrpf,LOC106576293 other downstream 218513 7318517 ~ 7321189 (+)
amdhd1 amdhd1 other downstream 223066 7323070 ~ 7332259 (+)
klhl42 klhl42 other downstream 263321 7363325 ~ 7368216 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other downstream 270438 7370442 ~ 7400399 (+)
ascl1a ascl1 other downstream 323614 7423618 ~ 7426254 (+)

Expression


Co-expression Network