rbm17 (rbm17)


Basic Information

Item Value
gene id rbm17
gene name rbm17
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 20642907 ~ 20655914 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792274.1
CTGCTGGCTtccgcccatgggtgtattgcTTCCGCCTCATACAGCGAGGAGCTAGCTCGCTAGCTAACTCATATCAGATGTGCTGCTAAACCTTTTTTTATGTTATAGGCACTTACTTTTAGTTATTGTCGAGGCTTTTCTAAAACCGGATACAGAGGCACTACTGACAGGCAGCAATGTCGCTGTATGATGACCTCGGTGTAGGTGCCAGTGACACCAAGACCGAAGGCTGGTCCAAGAACTTCAAGCTGCTGCAGTCCCAGCTGAAGGTGAAGAAGGCGGCTCTTACCCAGGCCAAGacccAGCGGATGAAGCAGACCACTGTCTTGGCTCCAGTTATTGATCTAAAGCGAGGAGGCTCCAGTGAGGAGAGACAGATCATAGACACTCCTCCACATGCTGCCGCTGGACTTAAGGACGCCGTGCCCAGTGGTTTCTCCGCCGGCGATGTGCTGATCCCGTTGGCAGACGAGTACGATCCAATGTTCCCCAACGACTACGAGAAGGTGGTGAAGCGACACCGAGAGGAACGACAGCGACAGAGGGAGCAGGAGCGGCTGAAGGAGATTGATGACCGAGAGAAGAAGAGGAAAGACAGGCACGACGGCGGAGCTCCAAGCGGTTTCTCTCGTTTCCCCGCAGCAGAGGGCGAgtcagatgaggaggaggactacgagacagagaggaggaaacGAAcCATGGGTGGAGCAGCTATCGCCCCTCCTTCTTCACTTGTGGACAAGGATGGCTCATACTCCTACGAGGATGAAGGCCGTCCTGCCAGAGGGTCAAAGGCCGCCATCCCTCCACCTATGTACGAGGACTCGGAGCGGCCACGCTCACCGCCCGGACCAACCAGCTCCTTCCTGGCTAACATGGGAGGTACGGTGGCCCATAAGATTATGCAGAAGTACGGCTTCAAAGAAGGCCAGGGCCTGGGGAAGCACGAGCAGGGCCTCAGCACGGCGCTGTCAGTGGAGAAGACCAGCAAGAGAGGTGGAAAGATCATCATAGGCGACGCTGCAGAGAAACCAGGATCCAGCCAGGCAGGTGCTGCTGAGACTTCAGCCGGAGGCTCTGCAGGTTGGCATTCACTCCCAtttgctctctctcccccattggCGGACTCTTCCAAGAAGTCGGACGCCAACCCGCTCACAGAAATCCTCAAAAACCCGACCAAAGTGGTCCtgctgaggAACATGGTGGGCCGAGGAGAGGTGGACGAAGACTTGGAGGGAGAGACGAAAGAAGAGTGCGAGAAATACGGCAAAGTAGTTAAATGTGTCATTTTTGAGATTGCAGTTGTGCCAGATGATGAAGCTGTTAGGATATTTCTGGAGTTTGAGAGGGTGGAGTCAGCCATCAAAGCCGTAGTGGATCTGAACGGACGTTATTTTGGCGGGCGAGTCGTCAAGGCCTGCTTCTACAATCTAGACAAGTTTCGTGTTTTGAACCTGGGCGAGCAGGTCTGATGTCTCCAAGGCACGGACGGACACTATGGGCATACATCTCCTCACTTGTacatagacctttttttttattttattttatatttcctGAACAGCAGCGAAGTGTCTGTATGTAGTGCTGAGTCCCCCTTGtagattgtctttttttcctgtcaTTAAAAATACCTTTAAGTGAAGATTAAATAAATGGTATGAACTATGTCTA
>XM_039792275.1
CTGCTGGCTtccgcccatgggtgtattgcTTCCGCCTCATACAGCGAGGAGCTAGCTCGCTAGCTAACTCATATCAGATGTGCTGCTAAACCTTTTTTTATGTTATAGGCACTTACTTTTAGTTATTGTCGAGGCTTTTCTAAAACCGGATACAGAGGCACTACTGACAGGCAGCAATGTCGCTGTATGATGACCTCGGTGTAGGTGCCAGTGACACCAAGACCGAAGGCTGGTCCAAGAACTTCAAGCTGCTGCAGTCCCAGCTGAAGGTGAAGAAGGCGGCTCTTACCCAGGCCAAGacccAGCGGATGAAGCAGACCACTGTCTTGGCTCCAGTTATTGATCTAAAGCGAGGAGGCTCCAGTGAGGAGAGACAGATCATAGACACTCCTCCACATGCTGCCGCTGGACTTAAGGACGCCGTGCCCAGTGGTTTCTCCGCCGGCGATGTGCTGATCCCGTTGGCAGACGAGTACGATCCAATGTTCCCCAACGACTACGAGAAGGTGGTGAAGCGACACCGAGAGGAACGACAGCGACAGAGGGAGCAGGAGCGGCTGAAGGAGATTGATGACCGAGAGAAGAAGAGGAAAGACAGGCACGACGGCGGAGCTCCAAGCGGTTTCTCTCGTTTCCCCGCAGCAGAGGGCGAgtcagatgaggaggaggactacgagacagagaggaggaaacGAAcCATGGGTGGAGCAGCTATCGCCCCTCCTTCTTCACTTGTGGACAAGGATGGCTCATACTCCTACGAGGATGAAGGCCGTCCTGCCAGAGGGTCAAAGGCCGCCATCCCTCCACCTATGTACGAGGACTCGGAGCGGCCACGCTCACCGCCCGGACCAACCAGCTCCTTCCTGGCTAACATGGGAGGTACGGTGGCCCATAAGATTATGCAGAAGTACGGCTTCAAAGAAGGCCAGGGCCTGGGGAAGCACGAGCAGGGCCTCAGCACGGCGCTGTCAGTGGAGAAGACCAGCAAGAGAGGTGGAAAGATCATCATAGGCGACGCTGCAGAGAAACCAGGATCCAGCCAGGCAGGTGCTGCTGAGACTTCAGCCGGAGGCTCTGCAGCGGACTCTTCCAAGAAGTCGGACGCCAACCCGCTCACAGAAATCCTCAAAAACCCGACCAAAGTGGTCCtgctgaggAACATGGTGGGCCGAGGAGAGGTGGACGAAGACTTGGAGGGAGAGACGAAAGAAGAGTGCGAGAAATACGGCAAAGTAGTTAAATGTGTCATTTTTGAGATTGCAGTTGTGCCAGATGATGAAGCTGTTAGGATATTTCTGGAGTTTGAGAGGGTGGAGTCAGCCATCAAAGCCGTAGTGGATCTGAACGGACGTTATTTTGGCGGGCGAGTCGTCAAGGCCTGCTTCTACAATCTAGACAAGTTTCGTGTTTTGAACCTGGGCGAGCAGGTCTGATGTCTCCAAGGCACGGACGGACACTATGGGCATACATCTCCTCACTTGTacatagacctttttttttattttattttatatttcctGAACAGCAGCGAAGTGTCTGTATGTAGTGCTGAGTCCCCCTTGtagattgtctttttttcctgtcaTTAAAAATACCTTTAAGTGAAGATTAAATAAATGGTATGAACTATGTCTA

Function

symbol description
rbm17 Predicted to enable RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within regulation of RNA splicing. Predicted to be located in nucleoplasm. Predicted to be part of spliceosomal complex. Orthologous to human RBM17 (RNA binding motif protein 17).

NR:

description
PREDICTED: splicing factor 45 isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12840 RBM17, SPF45; splicing factor 45

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792274.1 True 1677 mRNA 0.53 13 20642907 20655914
XM_039792275.1 False 1638 mRNA 0.53 13 20642907 20655914

Neighbor

gene id symbol gene type direction distance location
fbxo18 NA coding upstream 39728 20570988 ~ 20603179 (+)
nudt5 nudt5 coding upstream 72347 20565597 ~ 20570560 (+)
ccdc3a ccdc3,LOC102778083 coding upstream 208359 20422837 ~ 20434548 (+)
LOC120553582 phyh coding upstream 266559 20364803 ~ 20376348 (+)
LOC120553583 phyh coding upstream 280387 20355616 ~ 20362520 (+)
pfkfb3 pfkfb3,LOC102775874,LOC104933238 coding downstream 22135 20678049 ~ 20689946 (+)
ntf3 ntf3 coding downstream 160205 20816119 ~ 20864618 (+)
LOC120553788 NA coding downstream 241305 20897219 ~ 20906821 (+)
LOC120553657 LOC103369066 coding downstream 392023 21047937 ~ 21059082 (+)
zgc:162331 LOC104922672,LOC101475914,LOC102301200,LOC102199861,LOC102799838,LOC101071909,LOC104956107,LOC100698522 coding downstream 527972 21183886 ~ 21219226 (+)
G229130 NA non-coding upstream 35377 20607232 ~ 20607530 (+)
G229108 cdc123,LOC102776001 non-coding upstream 77727 20563063 ~ 20565180 (+)
G229060 NA non-coding upstream 188119 20442667 ~ 20454788 (+)
G229058 NA non-coding upstream 194350 20439458 ~ 20448557 (+)
G228989 NA non-coding upstream 341466 20298734 ~ 20301441 (+)
G229182 NA non-coding downstream 268034 20923948 ~ 20925059 (+)
G229205 NA non-coding downstream 382034 21037948 ~ 21062435 (+)
G229233 NA non-coding downstream 564534 21220448 ~ 21220812 (+)
G229263 NA non-coding downstream 608482 21264396 ~ 21264699 (+)
G229264 NA non-coding downstream 609498 21265412 ~ 21271111 (+)
ucmaa NA other upstream 251501 20382393 ~ 20391406 (+)
LOC120553418 NA other upstream 417722 20190928 ~ 20225185 (+)
LOC120553749 NA other upstream 469500 20147078 ~ 20173407 (+)
G228924 NA other upstream 657259 19982248 ~ 19985648 (+)
LOC120553104 LOC103364246,LOC103152567,LOC106913527,LOC103459763,LOC103459764,LOC106945279 other upstream 736955 19852928 ~ 19905952 (+)
LOC120553023 LOC106946322,LOC103151516,LOC104922640 other downstream 492353 21148267 ~ 21150351 (+)
arid2 arid2 other downstream 720958 21376872 ~ 21429238 (+)
G229423 NA other downstream 1182008 21837922 ~ 21847020 (+)
G229425 NA other downstream 1193297 21849211 ~ 21850601 (+)
G229422 NA other downstream 1202069 21857983 ~ 21859209 (+)

Expression


Co-expression Network