LOC120553653 (fgf6,LOC100708453,LOC101478942,LOC103358103)


Basic Information

Item Value
gene id LOC120553653
gene name fgf6,LOC100708453,LOC101478942,LOC103358103
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 9006558 ~ 9010187 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792293.1
ttagttaattgtatttgtattgcTCAATTTTTCTTTACTTAAATTTAACATGAAATTGTGGAGGAAGGAAGTTTTGTGAGACGAAATGATGCAGGGACCTACTGGAGTTGTGATGTGTGTAAGAGTTGTAACGCGGCCACACTGTTAAGggctttattttaaaaaagcacCACAGGAAACCCTTCTTCTTATTCTCTCTGGCTTGTTTGACGCTGATGTGAAGGTGCAGCACCCCCATCATTCTTATTagaactgctgctgctggggtcCTGCAacgctctcctcctcctcccacctcCTACTTTTGATGGGGGGTGCAGCGGTGTAGTCGTagtgatgtcattttaaaatgtgagaGTCGGAGCCAAGGTGAGCTGGTTTTGCGGTGAGTGGTGTCCCCTCCACGACCAGCGTTGCCTGTACAGAGGCGCGGAGCGGCGAAAGATGATCATCGCCACCGGCACCAATTCAAGCTCCGACGCGCTCTTTCCCTCTCCTGCTCAGATCTCGGGCTATGGGGCCCTGATCTGCCTTGATCCCATATTAAGCCTTCACCACCACCATGCCAAAGGACAAACAATCAGAAGAGTTGCATTTTTAGGGCAGGTAACTTTGACCACGTGCCCCAAAGGTAAACTGGATGGCCGTTGCGCAAAGGTGCCTCTACAGTATGTCCAGCGGGGCCAGGACGCACTGGACGCTGCCAGCAGTTCTTGTACTGTGGACTTCTCTCTGGGGGATCGTTTCATCTTATCCGATTCCGAGCAGGACTAATGCGACTTTATTGGAAAAGAAGTGGGAGACCCTCTTCTCCCGCTCCTATCTGGGTATAAATGGGGGGAAATCGGAGCTGAACTGGGAGAGTGACTATTTGCAGGGCATCAAAAGAGTGCGGCGACTGTACTGCAACGTGGGCATTGGGTTTCACCTGCAGGTGCTCCCGGATGGCAGGATAAGCGGTGCACACAATGAGAACCCATACAGTCTAATAGAGATCTCCACCGTGGACCGAGGAGTGATCAGCATGTTCGGGGTGAGGAGTGGGCTGTTTGTCGCAATGAACAGCAGGGGAAGGTTATACGGAACGAAAGTCTTCGTGGATGAGTGCAAGTTCAAGGAGACTTTGCTGCCCAACAACTACAACGCCTATGAGTCTTTTGTTTACAAGGGCTTCTACATCGCCCTCAGCAAGCATGGCCGCGTTAAGAGAGGCAACAAGGCCACCCCCGCCATGACCGTCACACATTTCCTCCCGCGACTATGAGAGAAACTGGCAATAACTCAGTCATTTGCACATGTGGATGTTCTTCCAGGTAATATAGAAACGCATAGTcatgatatactgtacacaccGATGGACTGCGAGAg

Function

symbol description
fgf6 Predicted to enable fibroblast growth factor receptor binding activity and growth factor activity. Acts upstream of or within fibroblast growth factor receptor signaling pathway and positive regulation of cell population proliferation. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Biomarker of prostate carcinoma in situ.

NR:

description
PREDICTED: fibroblast growth factor 6

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04358 FGF; fibroblast growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792293.1 True 1368 mRNA 0.50 3 9006558 9010187

Neighbor

gene id symbol gene type direction distance location
LOC120553730 LOC103358107,LOC100702291,LOC101477928 coding upstream 73581 8927072 ~ 8932977 (+)
atp6v1e1b LOC100708725,LOC104926722,LOC103358108,LOC106937970,LOC103156918,LOC106914460 coding upstream 79762 8918234 ~ 8926796 (+)
gnptab gnptab coding upstream 161533 8818570 ~ 8845025 (+)
washc3 ccdc53 coding upstream 199388 8802548 ~ 8807170 (+)
acss3 acss3 coding upstream 441203 8515588 ~ 8565355 (+)
fgf23 fgf23 coding downstream 6899 9017086 ~ 9020129 (+)
llph llph coding downstream 76986 9087173 ~ 9089548 (+)
guca1a LOC103358093,LOC102788764 coding downstream 106618 9116805 ~ 9119985 (+)
LOC120553346 ergic2 coding downstream 258011 9268198 ~ 9273908 (+)
cd36 NA coding downstream 663804 9673991 ~ 9679815 (+)
LOC120553611 NA non-coding upstream 63021 8941841 ~ 8943537 (+)
G226720 NA non-coding upstream 71007 8935050 ~ 8935551 (+)
G226641 mybpc1 non-coding upstream 122881 8881817 ~ 8883677 (+)
G226638 NA non-coding upstream 135847 8870018 ~ 8870711 (+)
LOC120553277 NA non-coding upstream 386063 8617814 ~ 8620495 (+)
G226716 NA non-coding downstream 1955 9012142 ~ 9012662 (+)
G226717 NA non-coding downstream 2656 9012843 ~ 9013646 (+)
G226747 NA non-coding downstream 5428 9015615 ~ 9015901 (+)
G226748 NA non-coding downstream 5886 9016073 ~ 9016275 (+)
G226755 NA non-coding downstream 27586 9037773 ~ 9039826 (+)
rps16 rps16,LOC103382554 other upstream 573861 8426635 ~ 8432697 (+)
LOC120553156 LOC104945813 other upstream 1437255 7566655 ~ 7569303 (+)
LOC120553154 LOC104945813,LOC103356648 other upstream 1474481 7525892 ~ 7532077 (+)
ascl1a ascl1 other upstream 1580304 7423618 ~ 7426254 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other upstream 1606159 7370442 ~ 7400399 (+)
lhfpl3 lhfpl3,LOC101483460 other downstream 124407 9134594 ~ 9173220 (+)
ndufb2 ndufb2,LOC102790702 other downstream 227039 9237226 ~ 9241349 (+)
G227121 kera other downstream 1687067 10697254 ~ 10699718 (+)
G227141 dcn,LOC103382665 other downstream 1721882 10732069 ~ 10737503 (+)
impdh1b LOC104968094,LOC103355171,LOC102293685,LOC102194436,LOC104918784 other downstream 1938098 10948285 ~ 10986201 (+)

Expression


Co-expression Network