lum (lum)


Basic Information

Item Value
gene id lum
gene name lum
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10707687 ~ 10712180 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792303.1
ccctctctccttctttccctCTGTGTTTTTCTCCAGAGACCCACACTGAACACCACACTGTTCTTACCTACTGGCCCTCCACCCCACGCACACAAAGAGTGAGAACTGCAGACGTTATGTTCCCTCTCCGTGTACCCCTGTTGGCCGTATTGGTCAGCGTAGCCCTGTGCCAATATTATGATTATGAGTACCAGCCTAATTATATGCAAGGACCCTCAGGGCCCAACTGTAATCAAGAATGTGACTGCCCAATCCACTTCCCCACTGCCATGTATTGTGACAGCCGCAAGCTCAAGTTTGTTCCAGTAGTGCCAACAGGGATCAAGTACCTGTACCTCCAGAACAACCAGATAGAAGAGATCAAGGCAGGAGTGTTTGATAACGTCACTGAGGGACTTCGCTGGCTGATACTTGACAACAACCAGATTACCAATGCTAAGATAGCAAAGGGCACAATCGACAAACTTACAGGCCTGGAGAAGCTACTCTTCAGCTACAACAACCTGACAGAGCCAGTTGTCCCTCCCTCAAAGTCCCTTGATGAGCTGAAGATAATGTACAACAAGTTATCCAAGTTCCCCTCTGGACTCTTGACTGACAAGGAGAACTTGACCTCCATCAACCTTCAGCACAATCAGCTAACGTCCGATGCCATCGGGGGGGCATTCAAAGGGCCAAAGAAGCTGCTGTCCCTGGACGTGAGCCACAACAAGCTGAAGAAGCTGCCTGCCGGAGTTCCCAGTTCACTGGAAATTCTCTATGCTGACTACAATGACATTGACAGTGTCGGAGCAGGATACCTGAGCAAGATGCCCTCGCTGCAGTACTTGAGGATCTCCAACAACAAGCTGGTGGACTCCGGACTCCCTGCTGGAGTGTTCAATGTGACATCACTAGTGGAGCTGGACCTGTCTTTCAACAAACTGCAGTCCATCCCTGAGATCAACGAGCAGCTGCAGCAACTCTACCTCCAGGCCAACGAAATCAGCAAGTTTGACCTGGCAAGTTTCTGCAAGTACATAACTCCTGTCAACTATTCCCACCTGAACCATCTGCGTCTGGACGGCAacaacatcacacacagcaGCATGCCCCCTGACACCTCCAACTGCCTGCGCCAACTTTCAGATGTCATTTTTGAATAAGGACCTCCCTCAAATCTATGACCTTTCCATTACCCCCTTTTCTACTACCATTATATGGCTCAGACCAAAGCCTTCTGGATTAAAATGGTGTAATATCCCTCCTGACATAGTGCTCACATGTCCTTGCACATAAGTAGTAAATGCTAATGCAAATCTGATGCACTGTAATGGCATCTTcatcaattaaaatatatatcttgAATAAATCAAGAGCTGGGCAAATTTGATGGCAAGAGAAGCTAGCAACAAGTTTGCAACATACTATTGGCAAACATCAGTTAAATTCATCAAACATCAAACAAAGGTTTTTAAATCTTTTGAACATTCTAATTGTTCACATAAACATGAAGgcaaaaaatagacaaaaaaaaatacaaaaatacaaaaagtaaAGGACCAAAAGTTCTATGAATAAAAATTGATTCATATGctttgaaaaacacacactttaaacATTCCAAACTTGCATTTTATTACATTGAATTCAGACACAATGGAGTAAATGATGGCTCCAATGTCTCAATTCAATCATCAATCGTCATTTTGTTGTCTGTCTTGTATGTTCTAATGTTTAGCATGTATAATATAATGTGGGTACAACAAATAATCCATTGCTGTGCAAAGGACCAGCAAACAAGGACTATGTACTCAGATTTCAGTGTGTAGTGCCCAATGTGAGAAATtatgaaaaaatgtaaaacagcaGTAACATAGAAGTCACATTTTTCAACTCCTGAATTAATCAAAGTGGTTTTAAGGTAAATACCATTGTTATTTACTTGTGTCTGCCTTTTTTACAAATGGTGCCCTGATGCAAATACCCTGATGTCCCACTGATTGACTCCTTTGAACtataaagtacacacacacacatatatatatatatatatatatatatatatatatatatatatactgtatatataccaACTAAGACATTTCTATTTCTTCACGAAAATAACTCCTTCAACCCAAATTTAAGTAGGACTTAGCTCTTTGTGAAGAGTAGAATAAATGACACATGATTAAAAGGCATTGGTACTATCCTTTAAACTACTGTACTTTCTCTGCTCAGTTAAACGTTGAAATGATTGAAGAGTCAAATTGTTTCTTTACGTTATCTTACTTCATAGCTGTCCACTTTCATGCGCATTGCTGATTTGTATACATTTGCATTACTTGCATGCAACCAATGGTACCATTCTTTTATAATAAACTACAGcttttgcagttaaggcgctcTCATTGTTACGTTGTTGTTCACCATGGTTGATAAATGCTTCTTACTGATACAAAGTCAACTTGACAGCAGTGTCTTGAATTCAGGATTGTCATTAATGAAGTTATGTTATTAGAATATCACattatgtttaggtcatttttcattttatcatGATTTCTTTTGTGGCCTTTGACTCGGTAACTGCTCTTGGATTTGCTGTGAGAAAACCGGACACACACTTtaaataaagttgaataaaatatgtttccaacataca

Function

symbol description
lum Acts upstream of or within collagen fibril organization and embryonic camera-type eye morphogenesis. Predicted to be located in collagen-containing extracellular matrix and extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including digestive system; epidermis; head mesenchyme; heart; and nervous system. Human ortholog(s) of this gene implicated in carotid artery disease; coronary artery disease; and pancreatic cancer. Orthologous to human LUM (lumican).

NR:

description
PREDICTED: lumican

GO:

id name namespace
GO:0030199 collagen fibril organization biological_process
GO:0007601 visual perception biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process

KEGG:

id description
K08122 LUM; lumican

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792303.1 True 2644 mRNA 0.40 3 10707687 10712180

Neighbor

gene id symbol gene type direction distance location
kera kera,LOC103355179 coding downstream 4525 10696480 ~ 10703162 (-)
epyc LOC104967728,LOC104925085 coding downstream 13391 10674459 ~ 10694296 (-)
si:ch211-244b2.4 NA coding downstream 36503 10666502 ~ 10671184 (-)
si:ch211-244b2.3 NA coding downstream 42201 10660920 ~ 10665486 (-)
LOC120553733 NA coding downstream 71767 10634748 ~ 10635920 (-)
dcn dcn,LOC103382665 coding upstream 13185 10725365 ~ 10745791 (-)
LOC120553735 LOC103355188,LOC104967726,LOC103399077 coding upstream 60076 10772256 ~ 10776872 (-)
btg1 btg1 coding upstream 130392 10842572 ~ 10851811 (-)
fam3c fam3c,LOC103355174 coding upstream 198157 10910337 ~ 10916577 (-)
si:dkey-159a18.1 LOC104968091,LOC103355173 coding upstream 204522 10916702 ~ 10932643 (-)
LOC120553135 NA non-coding downstream 47188 10639747 ~ 10660499 (-)
G227127 NA non-coding downstream 48760 10602594 ~ 10658927 (-)
G227089 NA non-coding downstream 169271 10538204 ~ 10538416 (-)
LOC120553506 NA non-coding downstream 169850 10509731 ~ 10537837 (-)
G227021 pacsin2,LOC102778832 non-coding downstream 481790 10223494 ~ 10225897 (-)
LOC120553801 NA non-coding upstream 228198 10940378 ~ 10942825 (-)
G227190 LOC104968094 non-coding upstream 236478 10948658 ~ 10949164 (-)
LOC120553014 samd3,LOC101476819 non-coding upstream 248180 10960360 ~ 10975333 (-)
G227211 NA non-coding upstream 311228 11023408 ~ 11023880 (-)
G227215 NA non-coding upstream 317664 11029844 ~ 11031005 (-)
G227082 anks1b other downstream 184725 10513494 ~ 10522962 (-)
dram1 dram1 other downstream 1893247 8809393 ~ 8814440 (-)
ppfia2 ppfia2 other downstream 1913777 8565242 ~ 8793910 (-)
G226495 LOC103356655,LOC105934024 other downstream 2816376 7888571 ~ 7891311 (-)
LOC120553151 LOC107386793,LOC104950937 other downstream 3213380 7422165 ~ 7494307 (-)
G227197 LOC102293685,LOC104918784,LOC102194436 other upstream 268018 10980198 ~ 10981259 (-)
hgfa LOC103365344,LOC104958230 other upstream 746401 11458581 ~ 11482578 (-)
pcloa pclo,LOC107085986,LOC103358500,LOC102794373,LOC108235068,LOC106514760 other upstream 905175 11617355 ~ 11676832 (-)
cracr2ab LOC102301749,LOC103365394 other upstream 1125068 11837248 ~ 11848941 (-)
G227429 LOC104958361,LOC103370548 other upstream 1572746 12284926 ~ 12288154 (-)

Expression


Co-expression Network