pkp2 (LOC103399101)


Basic Information

Item Value
gene id pkp2
gene name LOC103399101
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14276852 ~ 14290030 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792313.1
CCCGCCCACCGCACACAACAAAGCAGGAACAGTAGCTACCCATCGAGTTAAATGAAGGGACCGACCTAGACTCTCGGCAGATTTGGATTTGTCCACAATGGAAGAggtgttttttaaatcaacGTTACCTGCGCAGGACTCGTTCGTGCTGCATGACACCAGTCTGGCTCTGCCGGCCGAGCCGACTCTAAGATCCCCCATGGGAGTGAATTCAAACGGCCGGAGTCTGCGTGTTAACCAGCAGGTTCAGCTCACACTGGCACGCAAGGGAAGAAAGGCTGTGTCCAATGGTAGTGTCCAATTACAGAAAAACACTGCAAAAAACTTTGATGCTACAGATGGACTTTTACCAAACATGAAGgtAAAAGGATCGGGCCTCACCAACCGCTCTCTCTCAAGTAACCATGTGCTGAGACCATTGAGGAGGGTGGAAGTGTCTCCAGCACAGAGCCCAGAGTTACCTCGCAGCCGCTTCAATTATAGTACCCACCGTCATGGGACCTACACCCACCCAGGGCCCAGTCAGTCACACAGGGGGGGGACCCTTCTGGACCACTCACTTGGTTCTGATTCATTTCGTCGCTATGCTTTTTCCGAGGCACCCCGTGTCACACGGTCGCTCGCATCCACATCTGCAGACAGGACCTTCCACCGGAGGTcactcagacagacagcagcACCACAGCCTGTGTTTGCAAATGCAGCGTTTCAGCCAAGTGGTGAATATGGCTCTTGCTGGGATCATAACCAAACTATTGTCAAACAGGATAAAAACACCTTGTCCTGGTTGGCTGGGCTCAGGAGGGATTGTCAGGGGCACCACAGACAGAATTCATACCCACCCTCGGTCACTAGCGTGGAGGTGGACATGGGGCGGCAGACGGAAGTAGAACTCCCCATTCAGCAGATCCATGCAGAGAATATCCTAACAATGAAGTCAGAGAACAAGCCCCCAGAGATGACGTTAGAGAGGGCCGTGAACCTGTTGACCCAGGATAATGAGGAAATGCTCATCTGTGCAGCCAGCCACATACAGAATCAATGTTTCAAGAGTGACGATGCTAAAAAGATGGTGTACTATCTCCGTGGGATTGGAAAGCTCCTGCACCTCCTGTGCAATGACAATGAGGAAGTGCAACATGCTGCCGCTGGGGCTCTACGTAATGTCGTTTACCAGAGCACCGAAAACAAGATGGAGGTAAAGGAAAATGATGGCCTCGCCACTATTTTGCGTGCGCTGAAGAGCAGCCGTGATGTGGAGACCAGACGACAACTTACTGGTCTTTTGTGGAATCTCTCCTCTCATGACCTTTTGAAGGAGCATCTATCCAAAGAAGTCTTATCAGTCCTCACCAAGTCTGTCCTGGTACCAAGTTCTGGCCTTTCTGAAGGCGAGAACCCAAAAGACGAGCTCCTAGCTGATGCTGATGCTTTCCACAGTGCTACCGGCTGCCTGCGAAATCTGAGCTCCGCTGGTCCTGATGGAAGGAAAGCAATGAGGGAGTGTGAGAATTTTATTGACTCTCTGGTCTACTACATCCGGGGAGCCGTAGCTGACAAGACAGATGACAAGTCCACAGAGAACTGTGTCTGCATCCTGCACAACCTGTCTTATCAGATAGAGGCAGAGCTTCCTAAGAGGTACACCTTAGATCTCCGAGAATCTCGACAACACTTGGCTTCTAAGCAAAAGGCTGTCGGCTGCTTTAATTATCGCAGTACCAAGATCACTGAGcatCTGGAGCGACAGTGCCCCCTGCTGGAGGAGAAGGCTAACCCCCATGGCATGGAGTGGTTGTGGAGCACCATCACTATCCGCATGTATCTGTCACTGATGGCCCGCAGTGTGCGTCAACAAACCCAGGAGGCTGCCATCGGAGCCCTGCAGAACATCACAGCTGGGAAAGGAGCGCAGGTGTCTGAAGCCATCGCCTTCACTATTGTTCAACGGGAAAATGGCCTTCAGCATGTCAAAAAGATGTtggaggagggagaaagtaATGTGAAGAGGACGGCCATATCTCTAATAGAAAACCTCTCGCGCTACCAGAAACTGCACCCTGACATTGTGAAGCAGGGGATGCCAGAGTTGGTGGGGATGCTACCCAACGACGACACCGGCACCGAACAGCCCACCGAGGTGACGGCTTCTCTGTGTCACACCCTGAGCAACCTGTGTCAGAGTGACAGGCAGCATGTCAGAGCCATCGTCAACCAGGGAGCCCTCCCGAAGATCATCAACATCAGCAGCAAGGACAACGGTCATGGACCAACCAGAGCGGGTCAGGCAGCATGCATCCTGCTGCACACCATGTGGAAACACGGTGATCTCCATGGAGCCTACAAGAAGGGTGGGTACAGGAAAGTTGATTTCATTAATGCCAGGACAACAAAGGCTGTGAACTCCGGACGAGGCTGAACTGAAGATCTATAACTCAAGTTGCACCTGCTGATAACAGCAACAATCACTTGATGCACTGTTCCTCCTTTTTAATGAAGCGCCTGTGTGTTTTTCAATGCTGAAAACATTGTGAACTGTGCCTACAtttcacttaaaggtcccatgaaatGGCTTTAAAAGTGTACATTTAATTAGTGATGCTGTTCGTGTTAGTTATGGCTTAAGGACAAACATGTATTTTGGATTATAGGACACAGGAAAAGAGcagaatattatattaaaaataatggaTAACCGAACAATAAACCAGCTTACACAAAAAGTACATTACCGAATATTTTGAGTTATGTTGACATCTCTTTCGATACATCAGATACTTCTGGCCACTGTCTTGGTGCCTCACGGTTAGAAAAActgacagatgaatgtagaaaCTTTAACTGAAAAAGCAACCACTCTCCAGCAAAAATACTGAAGTTTGTTTACTGTAGCAGCAGCTCAGCAGTTGAGTAAACTGTTAACTgcgtgttttgtttattttttgcacTTAAGACGACACTGTCATTAAACAAAGAACCACAATGAAAATATTCACACTAAAGAAATTGTGGAGGAAAAATCACAAACCATTGAAATGTTATACAAATGTATATAAAATGAATTTTTGAATACAATGATTTCCTATTGTAACACAACAACAAGCTGATTTCTTACTGCCTGACTTGAGTGGATTccttaaattaataaaatgttttgaataaaa
>XM_039792314.1
CCGCCCACCGCACACAACAAAGCAGGAACAGTAGCTACCCATCGAGTTAAATGAAGGGACCGACCTAGACTCTCGGCAGATTTGGATTTGTCCACAATGGAAGAggtgttttttaaatcaacGTTACCTGCGCAGGACTCGTTCGTGCTGCATGACACCAGTCTGGCTCTGCCGGCCGAGCCGACTCTAAGATCCCCCATGGGAGTGAATTCAAACGGCCGGAGTCTGCGTGTTAACCAGCAGGTTCAGCTCACACTGGCACGCAAGGGAAGAAAGGCTGTGTCCAATGGTAGTGTCCAATTACAGAAAAACACTGCAAAAAACTTTGATGCTACAGATGGACTTTTACCAAACATGAAGgtAAAAGGATCGGGCCTCACCAACCGCTCTCTCTCAAGTAACCATGTGCTGAGACCATTGAGGAGGGTGGAAGTGTCTCCAGCACAGAGCCCAGAGTTACCTCGCAGCCGCTTCAATTATAGTACCCACCGTCATGGGACCTACACCCACCCAGGGCCCAGTCAGTCACACAGGGGGGGGACCCTTCTGGACCACTCACTTGGTTCTGATTCATTTCGTCGCTATGCTTTTTCCGAGGCACCCCGTGTCACACGGTCGCTCGCATCCACATCTGCAGACAGGACCTTCCACCGGAGGTcactcagacagacagcagcACCACAGCCTGTGTTTGCAAATGCAGCGTTTCAGCCAAGTGGTGAATATGGCTCTTGCTGGGATCATAACCAAACTATTGTCAAACAGGATAAAAACACCTTGTCCTGGTTGGCTGGGCTCAGGAGGGATTGTCAGGGGCACCACAGACAGAATTCATACCCACCCTCGGTCACTAGCGTGGAGGTGGACATGGGGCGGCAGACGGAAGTAGAACTCCCCATTCAGCAGATCCATGCAGAGAATATCCTAACAATGAAGTCAGAGAACAAGCCCCCAGAGATGACGTTAGAGAGGGCCGTGAACCTGTTGACCCAGGATAATGAGGAAATGCTCATCTGTGCAGCCAGCCACATACAGAATCAATGTTTCAAGAGTGACGATGCTAAAAAGATGGTGTACTATCTCCGTGGGATTGGAAAGCTCCTGCACCTCCTGTGCAATGACAATGAGGAAGTGCAACATGCTGCCGCTGGGGCTCTACGTAATGTCGTTTACCAGAGCACCGAAAACAAGATGGAGGTAAAGGAAAATGATGGCCTCGCCACTATTTTGCGTGCGCTGAAGAGCAGCCGTGATGTGGAGACCAGACGACAACTTACTGGTCTTTTGTGGAATCTCTCCTCTCATGACCTTTTGAAGGAGCATCTATCCAAAGAAGTCTTATCAGTCCTCACCAAGTCTGTCCTGGTACCAAGTTCTGGCCTTTCTGAAGGCGAGAACCCAAAAGACGAGCTCCTAGCTGATGCTGATGCTTTCCACAGTGCTACCGGCTGCCTGCGAAATCTGAGCTCCGCTGGTCCTGATGGAAGGAAAGCAATGAGGGAGTGTGAGAATTTTATTGACTCTCTGGTCTACTACATCCGGGGAGCCGTAGCTGACAAGACAGATGACAAGTCCACAGAGAACTGTGTCTGCATCCTGCACAACCTGTCTTATCAGATAGAGGCAGAGCTTCCTAAGAGGTACACCTTAGATCTCCGAGAATCTCGACAACACTTGGCTTCTAAGCAAAAGGCTGTCGGCTGCTTTAATTATCGCAGTACCAAGATCACTGAGcatCTGGAGCGACAGTGCCCCCTGCTGGAGGAGAAGGCTAACCCCCATGGCATGGAGTGGTTGTGGAGCACCATCACTATCCGCATGTATCTGTCACTGATGGCCCGCAGTGTGCGTCAACAAACCCAGGAGGCTGCCATCGGAGCCCTGCAGAACATCACAGCTGGGAAAGGAGCGGTGTCTGAAGCCATCGCCTTCACTATTGTTCAACGGGAAAATGGCCTTCAGCATGTCAAAAAGATGTtggaggagggagaaagtaATGTGAAGAGGACGGCCATATCTCTAATAGAAAACCTCTCGCGCTACCAGAAACTGCACCCTGACATTGTGAAGCAGGGGATGCCAGAGTTGGTGGGGATGCTACCCAACGACGACACCGGCACCGAACAGCCCACCGAGGTGACGGCTTCTCTGTGTCACACCCTGAGCAACCTGTGTCAGAGTGACAGGCAGCATGTCAGAGCCATCGTCAACCAGGGAGCCCTCCCGAAGATCATCAACATCAGCAGCAAGGACAACGGTCATGGACCAACCAGAGCGGGTCAGGCAGCATGCATCCTGCTGCACACCATGTGGAAACACGGTGATCTCCATGGAGCCTACAAGAAGGGTGGGTACAGGAAAGTTGATTTCATTAATGCCAGGACAACAAAGGCTGTGAACTCCGGACGAGGCTGAACTGAAGATCTATAACTCAAGTTGCACCTGCTGATAACAGCAACAATCACTTGATGCACTGTTCCTCCTTTTTAATGAAGCGCCTGTGTGTTTTTCAATGCTGAAAACATTGTGAACTGTGCCTACAtttcacttaaaggtcccatgaaatGGCTTTAAAAGTGTACATTTAATTAGTGATGCTGTTCGTGTTAGTTATGGCTTAAGGACAAACATGTATTTTGGATTATAGGACACAGGAAAAGAGcagaatattatattaaaaataatggaTAACCGAACAATAAACCAGCTTACACAAAAAGTACATTACCGAATATTTTGAGTTATGTTGACATCTCTTTCGATACATCAGATACTTCTGGCCACTGTCTTGGTGCCTCACGGTTAGAAAAActgacagatgaatgtagaaaCTTTAACTGAAAAAGCAACCACTCTCCAGCAAAAATACTGAAGTTTGTTTACTGTAGCAGCAGCTCAGCAGTTGAGTAAACTGTTAACTgcgtgttttgtttattttttgcacTTAAGACGACACTGTCATTAAACAAAGAACCACAATGAAAATATTCACACTAAAGAAATTGTGGAGGAAAAATCACAAACCATTGAAATGTTATACAAATGTATATAAAATGAATTTTTGAATACAATGATTTCCTATTGTAACACAACAACAAGCTGATTTCTTACTGCCTGACTTGAGTGGATTccttaaattaataaaatgttttgaataaaa

Function

NR:

description
PREDICTED: plakophilin-1-like, partial

GO: NA

KEGG:

id description
K12642 PKP2; plakophilin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792313.1 True 3164 mRNA 0.48 13 14276852 14290030
XM_039792314.1 False 3160 mRNA 0.48 13 14276852 14290029

Neighbor

gene id symbol gene type direction distance location
rassf8b rassf8,LOC103358112 coding downstream 14592 14241997 ~ 14262260 (-)
zgc:113263 LOC103358113 coding downstream 116783 14119739 ~ 14160069 (-)
ptpn12 ptpn12 coding downstream 170732 14053566 ~ 14106120 (-)
LOC120553471 rsbn1l,LOC104950472,LOC102308177 coding downstream 229188 14008717 ~ 14047664 (-)
LOC120553476 phtf2 coding downstream 274868 13956660 ~ 14001984 (-)
nudt4b LOC104951656,LOC104933915,LOC103358110,LOC107384862 coding upstream 792 14290822 ~ 14309611 (-)
ube2nb LOC104958109,LOC100699741,LOC104932591,LOC101482995,LOC102225258,LOC103382819,LOC107094607,LOC101068996 coding upstream 36067 14326097 ~ 14333939 (-)
mrpl42 mrpl42 coding upstream 44822 14334852 ~ 14338447 (-)
pwp1 pwp1,LOC102796104 coding upstream 49368 14339398 ~ 14348071 (-)
ano6 ano6 coding upstream 58716 14348746 ~ 14366431 (-)
G227814 NA non-coding downstream 45046 14231543 ~ 14231806 (-)
LOC120553016 NA non-coding downstream 57254 14178745 ~ 14219598 (-)
G227804 NA non-coding downstream 133593 14140179 ~ 14143259 (-)
G227784 NA non-coding downstream 326971 13949541 ~ 13949881 (-)
G227717 NA non-coding downstream 475349 13797584 ~ 13801503 (-)
G228019 NA non-coding upstream 479968 14769998 ~ 14770247 (-)
G228020 NA non-coding upstream 480468 14770498 ~ 14770967 (-)
G228021 NA non-coding upstream 484287 14774317 ~ 14774848 (-)
G228022 NA non-coding upstream 502215 14792245 ~ 14792469 (-)
LOC120553257 NA non-coding upstream 879613 15169643 ~ 15178955 (-)
LOC120553486 NA other downstream 617580 13643583 ~ 13659272 (-)
LOC120553470 wnk1 other downstream 659096 13516507 ~ 13617756 (-)
LOC120553407 napepld,LOC106940535 other downstream 768605 13485886 ~ 13508247 (-)
cacna1c cacna1c,LOC103459268,LOC106922075,LOC101471946 other downstream 932391 13126168 ~ 13344461 (-)
ube2h ube2h,LOC107690610,LOC107676921,LOC105888480 other downstream 1210324 13038151 ~ 13066528 (-)
waslb LOC103370764 other upstream 134207 14424237 ~ 14450589 (-)
grm8a grm8 other upstream 344080 14634110 ~ 15053285 (-)
znf800b znf800,LOC103364713,LOC103355189,LOC108412280 other upstream 765445 15055475 ~ 15089983 (-)
G228191 NA other upstream 1481208 15771238 ~ 15791853 (-)
G228291 LOC103356441,LOC102298269,LOC102212027 other upstream 2458812 16748842 ~ 16823432 (-)

Expression


Co-expression Network