pnpla3 (LOC103361965,LOC104964946)


Basic Information

Item Value
gene id pnpla3
gene name LOC103361965,LOC104964946
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 25218540 ~ 25241938 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792325.1
GGGTTATGGTTATAAGTCTAGCCTCCTTCATGAAACTTGGTTAAACCACATCTTCGACAGCAGATAGCGTCAACACTGGACAATAAAATAATCCAACAGGGGAATTTTCTTAGCTGAACACTAAAACAcaagtgtgcatgtaaacagaaaaacttgttttggttttagCTCTTTATATCATACAAAATCTAATACCCGCTCTTCGGTAAAAATAATTTTAGAATTAATTTCCTTATAGACGGACCACTGGACCACTGTTATCGGTGTTCTGATAGTTCTGACAGCATCTGAAGGCATCATTAGAAGTGCGTCCTGCACTTTCCTCTAAGCCAGTTGTTGACCTGTTGAGTAATATGCCGTCTGCCTTTCTCCGCTGAGCAGGACTGCTAGCCGTGTGACCGCTTCCCACTGTCCGCTCTCAGGTCTGCCCTGCCATGGTCGACCTAAACGGCGGCTGGAACCTGTCTTTCGCCGGGTGCGGGTTTCTGGGAATTTACCACATCGGAGTTGCTAGCTGCTTGCAGGAGAAAGCGCCCTACCTCATCGAAGGGGCCACCAAGTTGTACGGGGCCTCTGCCGGCGCTCTGACCGCCTCGGTGCTCGCTAGCCAGGCGTCCCTAGCCCAATGTTGTGAAGATGTGATCCAGGTGGCAAAAGAGGCCAGGAAAAGGAACCTGGGCCCCCTTCACCCCAACTTCAACCTGGTCAAGGTGTTAAAGTCTGGCCTGAATCGGGACCTGCCCTCTGATGCACATGTCCTGGCCTCGGGGCGGCTGTGCGTCTCGCTAACCCGAGTGTCTGACGGGCAGAATGAGCTGGTGTCGGAGTTCAACAGCAAAGAGGAACTCGTCGAGGCGCTGATCTGTAGCAGTTTCATTCCCATCTACTGCGGGCTGATTCCTCCATCCTTCAGAGGAGTGCGTTACGTGGATGGCGGGATCAGCAACAACCTGCCGCAGTCTGATTTGAAGAACACCATCACCATCTCTCCCTTCTCTGGCGAGTCTGACATCTGTCCCCGTGACGACTCCACCAGCTTCCACGAGCTGCGCTTCACCAACACCAGCATCCAGATGAACCTGGGCAACATGTACCGCCTCAGCAGGGCCCTGTTTCCCCCGGAAACCAAGGTAATGGCTGACATGTGTCAGAGCGGTTATAAGGATGCTCTGCGCTTCCTTGAAGAAAACAACCTGCTGATGCTCGATCGTCCAACCTCGGGCCCCGCCATGCCAGAGAGCCCGCCCACCACCTGCTGCTGTAAGCCTACAGAAACCACACAAGAGTGGGTGCTTCGGAGGCTCCGCCTACTGCGAAAACAGCACTGGTGGCTAGATGAGCAGATTGATCTGCCCACGCCCATCAAGAAAGtgttcTGTGAGGCCTGCCAAGACAAATCCGGCCTGTATACCAAGGTGTCCGAGATGCTGCCAGTCAGAGTGGCCTCCTACATGCTCATGCCATACACACTTCCTGTACAGTCGGCCTACTCAGTAGCCCAGAGGTTTGTGGAGTGGATCCCAGAGGTGCCAGCTGATATGCGCTGGCTGTGTGGGGTGGCAGGTGACATGTACCAACAGGCCTGGAAAGGAGCACCGGCTAGCTCTATTGGTGAGAAAGGCCTGAGGAAATGCCTGAGTGCGCCGCCTCTACCTACAGAGTGTGAGAAACCAATGCAGAGAGACAACCTGCCTGCTCTTTCCTCCATAGAGCTCCACGGTAACTCCTGGGAGAACGCCAAATCTACCTCCTCCTCGTCCCAAAATCATTCTCGCATCATCCCCTCCTCTCCGCAACAAGTCTGCTTCTATGTCGGCTCACAGGGTGATCAGCAGTAAAATGATTCAGGACCAGAACTTTAACAACGATTTGGTCAAATGTCCACTTTCTGTGAGGAGCTGGTGGATTGATGGACTGGTTAAATATTGAACCAATGGTGCGTAAATGTTTTAAGGAAACACACATTTATCTCTGACTCTGAACACTCCAGGCAGCACCGATATTTCACTGGGTGCTCTGGGAGACAGTGTCACAACTCACCCAGGATCATGGATGTGTTTTATTATCTCTTTTAATGCACAGCACAGAAATGTGTCTAGTTTCACAGTCTCACTACAACCCTACCTACCTGTTTGTTTAACATATactcaaacgtaacagtcattCCTCATTCCAGTACAGCTTATTGAATCAAGAGCAGGGTTCCCACACATCTGTCATGGACAACATTTCaaaacttttccatgacttttcaaGGACCCGTAATAAGATTTCAATGGGCATTTACAACATGTCACACGAATATAACTGTATACTACACTTTACTCCAAATGTTAATTATTGTATGAAAAGCTTTTTTCAATCTAAATGTTTATATTAGTTGAAGTACTTCAAACTACAGGCACAGTCAATCCACTTCCTTTATTATATCAGGCTGGAACTGGCTTTCCAGCATGAGGAGAAACCAGACCGATTGTACTATCAGTGCATTTTTAATGCATTTGATTGTAAAATCATTTTGGGATGCAAAAACAATGCATACATACTACATAATATTTCATAGCTCtctattcaattaaattcaattttatttatagtatcaaatcatagcagtagttatctcaagacactttacagatagagtaggtctagtggcaataatagtcacaataaagataatgctACTGtaactagaaataatagttgttcAGGGCTTAGTAGGGCATAGAagggcgtagcagggtatagcagggagTAGCAGGGTATAGTAGGGCGTATCAGGGCATAGTAGGCGTatcagggcatagtagggcatagtagggctGCTCACAGATACAAATTGCAGCGGTCATTAGAGAGCCATGAAATATTAAATGATCACCTCCCCGGTCTTATTCAAACGTATCAGATTCAAACATAATTTCAGCTAGCTGGAGGGAGAGATGGAACGCAGGGAGATAACGATAAAACGTACTGTACGTGATGgtaaacaaaacacacatcaaCGCAGATTAGAGCTACAGCACGTCTACAGCTTCAGTCAATAATACATGGAGGGTTATCCATGAAAGATTGCTGTAACAACTAATTACATTTAACACGACAAAATCCCTTGACTTTTCCACGCCtggaaaatgagattttaacattccatgacttttccaggtTTTCCTCGACCGTGTGAAGTGTCTCTATATATCTGTCTGTTTAGGTCATGTCTGTTTTTACAGTAGTGATGTCTACAGGCACCAAATGACGACTTCTAGGGTACACGATGCAACTTCTGGCAGCCATATTGGAGGACTGTCGGCCTCTTTATTAATTTAAAGATCCCCtccttctgtttttcttatgttTAAGTTCCCTTAAAATATGATATCTTGAC

Function

NR:

description
PREDICTED: patatin-like phospholipase domain-containing protein 2

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792325.1 True 3385 mRNA 0.47 9 25218540 25241938

Neighbor

gene id symbol gene type direction distance location
mpped1 mpped1,LOC103131679,LOC106525904 coding upstream 105347 25011234 ~ 25113193 (+)
scube1 scube1 coding upstream 226375 24869947 ~ 24992165 (+)
LOC120553142 NA coding upstream 382795 24830198 ~ 24835745 (+)
LOC120553386 NA coding upstream 429787 24773501 ~ 24788753 (+)
LOC120553387 NA coding upstream 468712 24732196 ~ 24749828 (+)
LOC120553672 LOC103361951,LOC100711848,LOC101487241 coding downstream 2599 25244537 ~ 25260350 (+)
ttll12 ttll12 coding downstream 22058 25263996 ~ 25349341 (+)
LOC120553526 NA coding downstream 150494 25392432 ~ 25400207 (+)
LOC120553524 dennd5b,LOC102198357 coding downstream 160417 25402355 ~ 25491732 (+)
prl2 LOC104964766,LOC103356682,LOC100697904 coding downstream 305002 25546940 ~ 25553001 (+)
G230249 NA non-coding upstream 26597 25184812 ~ 25191943 (+)
G230192 NA non-coding upstream 419799 24795953 ~ 24798741 (+)
G230109 NA non-coding upstream 733023 24482310 ~ 24485517 (+)
G230011 NA non-coding upstream 954475 24260059 ~ 24264065 (+)
G229994 NA non-coding upstream 1102419 24112965 ~ 24116121 (+)
G230260 NA non-coding downstream 109939 25351877 ~ 25352174 (+)
G230259 NA non-coding downstream 134409 25376347 ~ 25377601 (+)
G230327 NA non-coding downstream 194213 25436151 ~ 25494355 (+)
G230336 NA non-coding downstream 253210 25495148 ~ 25495399 (+)
G230337 NA non-coding downstream 257909 25499847 ~ 25500209 (+)
G230148 LOC102781993,LOC101465723 other upstream 440282 24620812 ~ 24778258 (+)
LOC120553083 NA other upstream 903833 24309542 ~ 24314707 (+)
LOC120553686 LOC105929833,LOC107382334 other upstream 1272900 23934300 ~ 23945640 (+)
adm2a NA other upstream 1369916 23833018 ~ 23848624 (+)
kcnc2 kcnc2,LOC100689973,LOC101475944 other upstream 1777877 23315421 ~ 23440663 (+)
LOC120553523 NA other downstream 120944 25362882 ~ 25373996 (+)
msrb3 msrb3 other downstream 399902 25641840 ~ 25662819 (+)
LOC120553706 NA other downstream 568469 25810407 ~ 25812828 (+)
arhgef39 arhgef39 other downstream 796250 26038188 ~ 26106823 (+)
mrps33 mrps33,LOC106591474 other downstream 1130776 26372714 ~ 26381109 (+)

Expression


Co-expression Network