LOC120553672 (LOC103361951,LOC100711848,LOC101487241)


Basic Information

Item Value
gene id LOC120553672
gene name LOC103361951,LOC100711848,LOC101487241
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 25244537 ~ 25260350 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792326.1
ATCACTCAGCAGAGAGTAAAAGGATGGCGGAGGACGGGAGGGATGAGTTGGTGGCCACTGACGATGAGTCCGACCACACAGCTGCAGACGGGAGCAGCAGCCTAAACAATACGATGGTGGAAGAGGGCTCCACTCTCGTGCGCAGAATGGAGATCTGCGTTGCCGAGGCCGAGAAAAGGAGTGGTAAAAACACAGTGAACATGCAGGAAACGTTCACTGTGTACCTCATCGAAACACGGCCCATGGATGCAGTCGCGGAAGGTCGTAACCCAGCCCCTGACTCTCTGTGGAGGAGATACAGTGAATTTGAACTTCTGCGTAACTACCTGCTAGTTACCTATCCATACATCGTGGTCCCCCCTTTGCCTGAGAAGAGGGCGGAGTTTGTGTGGCATAAGCTGTCTGCTGACAACATGGACCCAGATTTTGTGGAGCGGCGCAGGATCGGGCTGGAGAACTTTCTGCTTCGCGTGGCATCACACCCAGTCCTCTCCAATGACAAGATCCTCCACCACTTTCTCACTGAGGAATATGGCTGGAAGGAAGTGGTGTATGAGACAGGATTTCAGGCAAAGGCAGATTCCAGGATCAGGGCTCTCAGTGCCACCTTCAGGGTGAGAAATCCAGATAAACGCTTCATGGAGATGAAACACTACAGCGATCAGCTGCAATCTCACACATCTCAGCTGCTCCGAGCACGGGCAAGGGTTGCAGATCGACTCTACGGTGTTTACAAGGTCCATGGGAACTATGGGAGAGTCTTCAGTGAGTGGAGCGCCATAGAGAAAGAGATGGGAGACGGACTGCAAAGTGCCGGTCATCACATGGATGCGTATGCTGCCTCAATAGATGATATCTTAGAAGAAGAGGAACATTATGCAGACCAACTGAAAGAATATCTCTTCTATGCTGAAGCTCTGAGGGCAGTGTGCAGGAAACACGAGCTGACCCAGTTTGAGCTTGAGATGGCCTCCCAGGACCTCATCTCAAAGAAGCAGCAACACGAGGAGCTGGCTACAGGGATTGTGCGGACGTTCTCCTTCAAAGGCATGACCAACAAGATTTTTGGCCAAGAGGCACCTGTGCAGAGGGAGGCCAGAATCAAGCTGCTGGAGGAGCTAATAGCAGAGGGGGAAGACactgttaaggagaaaacagtCGAGTGCGAAGAGCACGTTGAAAGGGCGTGGGTGGATATGCAGCGCTTTAAGGAGCAGAAAGACAAAGATCTGCGGGAAGCGCTCATCAACTATGCTGTCATGCAAATCAGCATGTGCAAAAAGggaATACAAATGTGGAGCAATGCCAAAGAATGTTTCCTCAAGATGTAAAAGTGAAGCCATATTCAAAGGATTCCCAGCCTCAGTAATGCTCAGCTGTGGATGCTGGAAAATGACGCCAATGTCTTGTGGTTATGGTTTACAAACAACATGCGTAAAAAGATTATGTAGTTTCAAGAATTTTCACAAAATGCAACTAATGCTCAGTAGTAATTGACATTCACTGTTAACCTGCGGTGGAGTGAGAAAAGGGAGGTCCATGAGTGAGACACTGGAGACCAGGGTTCACACACTGGCTGGACCTTCTTAATATCTAGCCAAGACCATTTTCTCTCACCTTAAGGAGGCAGTTCGACAACTGTACATTGTCAAAGTCATGTCACTAGTTGGGAAGTGAAGTGACTTTGATAGATGGGAAGTGTGGAGTTTGATAGACGTGGCCATTTAACAGCCAGAGctttttggagcttgacccatACAAGGGACTTATAGTCTGGCAATCACAGACACTGCTGCGCTGATATTGACCAGTCTTTTTAATATTGTGTATCTTCTCAGTCAGTTTATGGATCTGTAATACTAAATTCCTTGAGTGCAAAGTGTACTGATGGGTGCTTTTACTTCTATGTAACCTGTTCAAACCCTGTGAATCGTTCAGGCTGGTCTGAAACCTTTGAATCAAACTCTGgtatggaggaggaagaggaagaggaggcatatacgtatgtatgtatatatatatatatatacacacaagaTGGTTACACAAGATAAATTGGTAACCATCAGAAAGTgaaaagcattttaaaacaGTGGCTTGTttcacataaatacattttgacttCAGATAGACATCTAgagccctatcttgcacccggcgcaccGCGGCGCA

Function

NR:

description
PREDICTED: sorting nexin-4-like isoform X1

GO: NA

KEGG:

id description
K17919 SNX4; sorting nexin-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792326.1 True 2172 mRNA 0.47 14 25244537 25260350

Neighbor

gene id symbol gene type direction distance location
pnpla3 LOC103361965,LOC104964946 coding upstream 2599 25218540 ~ 25241938 (+)
mpped1 mpped1,LOC103131679,LOC106525904 coding upstream 131344 25011234 ~ 25113193 (+)
scube1 scube1 coding upstream 252372 24869947 ~ 24992165 (+)
LOC120553142 NA coding upstream 408792 24830198 ~ 24835745 (+)
LOC120553386 NA coding upstream 455784 24773501 ~ 24788753 (+)
ttll12 ttll12 coding downstream 3646 25263996 ~ 25349341 (+)
LOC120553526 NA coding downstream 132082 25392432 ~ 25400207 (+)
LOC120553524 dennd5b,LOC102198357 coding downstream 142005 25402355 ~ 25491732 (+)
prl2 LOC104964766,LOC103356682,LOC100697904 coding downstream 286590 25546940 ~ 25553001 (+)
cdnf LOC104964768 coding downstream 308189 25568539 ~ 25574022 (+)
G230249 NA non-coding upstream 52594 25184812 ~ 25191943 (+)
G230192 NA non-coding upstream 445796 24795953 ~ 24798741 (+)
G230109 NA non-coding upstream 759020 24482310 ~ 24485517 (+)
G230011 NA non-coding upstream 980472 24260059 ~ 24264065 (+)
G229994 NA non-coding upstream 1128416 24112965 ~ 24116121 (+)
G230260 NA non-coding downstream 91527 25351877 ~ 25352174 (+)
G230259 NA non-coding downstream 115997 25376347 ~ 25377601 (+)
G230327 NA non-coding downstream 175801 25436151 ~ 25494355 (+)
G230336 NA non-coding downstream 234798 25495148 ~ 25495399 (+)
G230337 NA non-coding downstream 239497 25499847 ~ 25500209 (+)
G230148 LOC102781993,LOC101465723 other upstream 466279 24620812 ~ 24778258 (+)
LOC120553083 NA other upstream 929830 24309542 ~ 24314707 (+)
LOC120553686 LOC105929833,LOC107382334 other upstream 1298897 23934300 ~ 23945640 (+)
adm2a NA other upstream 1395913 23833018 ~ 23848624 (+)
kcnc2 kcnc2,LOC100689973,LOC101475944 other upstream 1803874 23315421 ~ 23440663 (+)
LOC120553523 NA other downstream 102532 25362882 ~ 25373996 (+)
msrb3 msrb3 other downstream 381490 25641840 ~ 25662819 (+)
LOC120553706 NA other downstream 550057 25810407 ~ 25812828 (+)
arhgef39 arhgef39 other downstream 777838 26038188 ~ 26106823 (+)
mrps33 mrps33,LOC106591474 other downstream 1112364 26372714 ~ 26381109 (+)

Expression


Co-expression Network