atp5f1c (atp5c1)


Basic Information

Item Value
gene id atp5f1c
gene name atp5c1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 6506578 ~ 6513168 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792329.1
TTTTGCTTTTTGCCTTTACCTTGCGCCTGCGCAGTCCTGCGTGTCTGACCTTCATAGGAGTAACCATGTTCGCCAGGACCAGCGCGTTGGTGTTCTCCCCACAATGTGGGCAGGTCAGGAACATGGCCACCTTGAAGGACATCACCCTTCGGTTGAAGTCCATCAAGAACATCCAGAAAATCACCAAGTCCATGAAAATGGTGGCCGCTGCCAAGTATGCTCGTGCTGAGAGGCAGCTGAAGCCAGCCAGAGTCTATGGCACTGGAGCTCTGGCCCTCTACGAGAAGGCCGAAATCAAAGCGCCAGAAGACAAGTCAGCCAAGCATTTGCTCATTGGTGTGACGTCCGACCGTGGACTCTGTGGTGCCATCCACACTGGTGTGGCCAAGCTCATTAAGAGCGAGATCGCCGCCCTGACCAGCGCTGGCAACGAGGTCATGGTGGTCAATGTGGGAGACAAGCTGAGAAACCTGCTGCACAGGTCTCATGGACAGCACATCATTCTGAACTGTAAGGAGGTGGGCCGCAAGCCCCCCAGCTTCAATGACGCTTCGATCGTCGCCTCCGAGCTGCTCAACTCTGGACATGAATTTGACCAGGGCACCGTCTTCTTCAACAGATTCAAGTCTGTTATCTCATACAAGACGGACAGGAAGCCTTTGTTTTCCACCGACACAATTACTAACGCAGAGAGTATGGGAATCTATGACGACATTGATGCTGACGTGCTGAGGAACTACCAGGAGTTTGCTCTGGTCAACATCATCTTCCTGGCCATGAAGGAGTCCACCACCTCTGAGCAGAGTGCCAGGATGACCGCTATGGACAACGCCAGCAAGAACGCCTCTGACATCATTGAAAAGCTGACCCTCAAATTCAACCGTACCCGACAGGCCGTCATCACCAAGGAGCTCATTGAGATCATctctggagctgctgctctGAACTGAGGCTTGTTTTAACAGAGGAGCTAAACGGGCGAGATCTTCGTTTCCATTAACTAGAGTTCTTCAAAGTACTTTAGACACATGTTGTCGGAAGTCTATGAACATTTGTGCTTCTATTTGTAAAATATATGGTAAAAATAAACCTCTTATAGAACCCTCATGCTTTTCATCAGTCCCTGTATCTGTCATTCCTCACAATAAATGCTGATGActgagaaataaaaatgttgatgcTTTA
>XM_039792330.1
TTTTGCTTTTTGCCTTTACCTTGCGCCTGCGCAGTCCTGCGTGTCTGACCTTCATAGGAGTAACCATGTTCGCCAGGACCAGCGCGTTGGTGTTCTCCCCACAATGTGGGCAGGTCAGGAACATGGCCACCTTGAAGGACATCACCCTTCGGTTGAAGTCCATCAAGAACATCCAGAAAATCACCAAGTCCATGAAAATGGTGGCCGCTGCCAAGTATGCTCGTGCTGAGAGGCAGCTGAAGCCAGCCAGAGTCTATGGCACTGGAGCTCTGGCCCTCTACGAGAAGGCCGAAATCAAAGCGCCAGAAGACAAGTCAGCCAAGCATTTGCTCATTGGTGTGACGTCCGACCGTGGACTCTGTGGTGCCATCCACACTGGTGTGGCCAAGCTCATTAAGAGCGAGATCGCCGCCCTGACCAGCGCTGGCAACGAGGTCATGGTGGTCAATGTGGGAGACAAGCTGAGAAACCTGCTGCACAGGTCTCATGGACAGCACATCATTCTGAACTGTAAGGAGGTGGGCCGCAAGCCCCCCAGCTTCAATGACGCTTCGATCGTCGCCTCCGAGCTGCTCAACTCTGGACATGAATTTGACCAGGGCACCGTCTTCTTCAACAGATTCAAGTCTGTTATCTCATACAAGACGGACAGGAAGCCTTTGTTTTCCACCGACACAATTACTAACGCAGAGAGTATGGGAATCTATGACGACATTGATGCTGACGTGCTGAGGAACTACCAGGAGTTTGCTCTGGTCAACATCATCTTCCTGGCCATGAAGGAGTCCACCACCTCTGAGCAGAGTGCCAGGATGACCGCTATGGACAACGCCAGCAAGAACGCCTCTGACATCATTGAAAAGCTGACCCTCAAATTCAACCGTACCCGACAGGCCGTCATCACCAAGGAGCTCATTGAGATCATctctggagctgctgctctCTAAACGGGCGAGATCTTCGTTTCCATTAACTAGAGTTCTTCAAAGTACTTTAGACACATGTTGTCGGAAGTCTATGAACATTTGTGCTTCTATTTGTAAAATATATGGTAAAAATAAACCTCTTATAGAACCCTCATGCTTTTCATCAGTCCCTGTATCTGTCATTCCTCACAATAAATGCTGATGActgagaaataaaaatgttgatgcTTTA
>XM_039792331.1
TTTTGCTTTTTGCCTTTACCTTGCGCCTGCGCAGTCCTGCGTGTCTGACCTTCATAGGAGTAACCATGTTCGCCAGGACCAGCGCGTTGGTGTTCTCCCCACAATGTGGGCAGGTCAGGAACATGGCCACCTTGAAGGACATCACCCTTCGGTTGAAGTCCATCAAGAACATCCAGAAAATCACCAAGTCCATGAAAATGGTGGCCGCTGCCAAGTATGCTCGTGCTGAGAGGCAGCTGAAGCCAGCCAGAGTCTATGGCACTGGAGCTCTGGCCCTCTACGAGAAGGCCGAAATCAAAGCGCCAGAAGACAAGTCAGCCAAGCATTTGCTCATTGGTGTGACGTCCGACCGTGGACTCTGTGGTGCCATCCACACTGGTGTGGCCAAGCTCATTAAGAGCGAGATCGCCGCCCTGACCAGCGCTGGCAACGAGGTCATGGTGGTCAATGTGGGAGACAAGCTGAGAAACCTGCTGCACAGGTCTCATGGACAGCACATCATTCTGAACTGTAAGGAGGTGGGCCGCAAGCCCCCCAGCTTCAATGACGCTTCGATCGTCGCCTCCGAGCTGCTCAACTCTGGACATGAATTTGACCAGGGCACCGTCTTCTTCAACAGATTCAAGTCTGTTATCTCATACAAGACGGACAGGAAGCCTTTGTTTTCCACCGACACAATTACTAACGCAGAGAGTATGGGAATCTATGACGACATTGATGCTGACGTGCTGAGGAACTACCAGGAGTTTGCTCTGGTCAACATCATCTTCCTGGCCATGAAGGAGTCCACCACCTCTGAGCAGAGTGCCAGGATGACCGCTATGGACAACGCCAGCAAGAACGCCTCTGACATCATTGAAAAGCTGACCCTCAAATTCAACCGTACCCGACAGGCCGTCATCACCAAGGAGCTCATTGAGATCATctctggagctgctgctctgtaa

Function

symbol description
atp5c1 Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP biosynthetic process and ion transport. Located in mitochondrial inner membrane and myelin sheath. Is expressed in several structures, including alimentary system; genitourinary system; integumental system; nervous system; and sensory organ. Orthologous to human ATP5F1C (ATP synthase F1 subunit gamma).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02136 ATPeF1G, ATP5C1, ATP3; F-type H+-transporting ATPase subunit gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792329.1 True 1185 mRNA 0.50 10 6506578 6513168
XM_039792330.1 False 1158 mRNA 0.50 9 6506578 6513168
XM_039792331.1 False 947 mRNA 0.53 8 6507301 6513168

Neighbor

gene id symbol gene type direction distance location
gata3 gata3,LOC102792415 coding downstream 73852 6417232 ~ 6432726 (-)
celf2 celf2,LOC106927059,LOC103370671,LOC107092344,LOC101484207,LOC100706659,LOC106576215,LOC106609337 coding downstream 716286 5552494 ~ 5790292 (-)
usp6nl usp6nl coding downstream 978070 5402055 ~ 5528508 (-)
LOC120553314 NA coding downstream 1302488 5187025 ~ 5204090 (-)
LOC120553207 trhde,LOC102788275 coding downstream 1414110 4826853 ~ 5092468 (-)
itih2 itih2 coding upstream 6189 6519357 ~ 6533661 (-)
tmem110l LOC101465056,LOC103375076,LOC102308360,LOC100692898,LOC102790606 coding upstream 40290 6553458 ~ 6574482 (-)
tbc1d30 tbc1d30,LOC102788373 coding upstream 177406 6690574 ~ 6717944 (-)
zgc:194209 LOC103375033,LOC102787798,LOC102205194,LOC101467670 coding upstream 223438 6736606 ~ 6745985 (-)
rassf3 rassf3,LOC102298244,LOC102210289,LOC103364097,LOC106956171,LOC103129390 coding upstream 234333 6747501 ~ 6823905 (-)
G226113 NA non-coding downstream 64254 6442038 ~ 6442324 (-)
G226083 NA non-coding downstream 672364 5833734 ~ 5834214 (-)
G226074 NA non-coding downstream 952163 5553966 ~ 5554415 (-)
G226070 NA non-coding downstream 1059005 5446741 ~ 5447573 (-)
G226054 NA non-coding downstream 1135264 5371040 ~ 5371314 (-)
LOC120553101 NA non-coding upstream 121482 6634650 ~ 6688822 (-)
G226199 NA non-coding upstream 219270 6732438 ~ 6735270 (-)
G226216 NA non-coding upstream 410863 6924031 ~ 6926245 (-)
G226244 NA non-coding upstream 515580 7028748 ~ 7028958 (-)
G226259 NA non-coding upstream 551457 7064625 ~ 7072997 (-)
LOC120553807 LOC104934913 other downstream 1243526 5242890 ~ 5263052 (-)
cpm cpm,LOC106925010 other downstream 1723819 4756921 ~ 4782759 (-)
LOC120553649 NA other downstream 1966781 4529987 ~ 4539797 (-)
G225751 NA other downstream 2455387 4047316 ~ 4051191 (-)
G225672 cand1,LOC106591200,LOC107725503,LOC107571724,LOC107694273,LOC107655592 other downstream 2702327 3800138 ~ 3804251 (-)
G226200 gns other upstream 217139 6730307 ~ 6730782 (-)
tmem243b tmem243 other upstream 560725 7073893 ~ 7086322 (-)
meig1 meig1 other upstream 573776 7086944 ~ 7089168 (-)
usp44 usp44,LOC102783730 other upstream 755869 7269037 ~ 7278324 (-)
LOC120553151 LOC107386793,LOC104950937 other upstream 908997 7422165 ~ 7494307 (-)

Expression


Co-expression Network