LOC120553682


Basic Information

Item Value
gene id LOC120553682
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17109537 ~ 17112443 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792344.1
CTTCTTCACTCATTGCTCCCTCTAACGCCATGTTGGCTGTTATGAGTTGACTTGTTGTTTTCATCAGTCTTACTACGGACTTGACAGGAGTGGCTCTTTTAAACTCCCCCCCTGCGCCCTTGGAGACGCTTTTATTCCATTTTTGCGCGTACGCGTTTTGGATGATACGCGCGGAGTATGCACGCATCATCCCTGTGACTTTGCATTTTAAAGGAATACTACTTGGAAATAGAAGTTTAAAAGGGtttggttgttgtttgttttgtttccccccaccacccccccacccTTGTCATATGTGCAACAAAATGTCAGATGTTCGCCTTTCTAATGCGAGCCCGACATTGGAGAGGGTGGATGCGCGGCAGCCAGACAACGTCAGACCTTCGGTCCGCAGAAACCTTTTCGGCAGACCTGACCCAGCGGAGATACAAAGGAATGTGACGGCTTCGATACAGGAAGATGTGCGGAGTTTCACGGAGACGTACAATTTCGATCCCATCAACGAGACACCGCTCGCTCCGCGCAATTACGACTGGCAGGAGGACCGCAACGCGCCGGAGTTTTATGTCCGACCGCCTCACGGGAGCCAGCGGCCCCAGCAGCGAGATCAGGACTTCCCCGGCGAAAACAACCGGCAGGATGCCGAGACGAGGTGTGAGCGCCAGTCGGATCAACCACACAGAGATGGTTCGAGAAAAAGACGTTCAGGTCCCTGCTCCAGCGAGTGTCAGAGTAAAAGGTCGCATACCGACGAAGATGAGGATGAAGACCAGTCGGACGGTGCAGGAAGTCAGGCGGTAAAAGCAGCGGAGGAGAGACCCAGCAGGTCCGAGAAGAGCGCGGAGGTGCAGTGAAAAGCAGTGCCAGAGCGGGAGACCTGTTGCTGGTGGAATACTGTAGCCTTTCTCATCACCTGACAGATGGgagagaaaatataaaaaacgcAGCCTTTTCCTAaagaagggaggaggagaggctgCACAAGCACTGATTATGTACACTATCAAGTTTTGGCActcattttaattaaattgcCTCAGAAGCAGCAGACAATGTAGCATTGTGCAAATGGattttgccctttttttttatctactaCCTATGTTTCAGATgtagcacataaaaaaaaagcatattatGCTTTTCATACCTTTCGTTAAATGTTTTTGAATAAGTGTGTGACTTTGACTCGGGAAGTTGCAGTGCAATTTCCAACAGAGaaatattattttgttaaaGTGGTCATATTGTGTCATTATTCAGGTAATTGATgtaagttttaaaaaatgcaGATATCAAAAGTCAGGGTTGTGTGGAAACAAAATGTCTTCACTTTTTCTATGGCTTTATTTGTCCCAGTGTTATAAATCTTGTTTTTGAAGGCCCAGATGGCCACACTGTAAGATGAGGGTCCATCTAACTGGGAACCGCCATGACAGataaagtttacatgcaaatATATTCTCCCTCTTTCAcccattttttttcttagaatgtaattattattacattttttttgtattgtattttttgttttgtttttgccaaaGTTTGAACCTTTTTGTTCTGGGGGTGAGGGGAGGGGTGGGAGCTAAACTGCTGAGCAATATCCAACCAAATTGTAACAGTATTTGCTAATAATCCTAAGaattagcttttattttttaaattaggtttatatTTTAGTGACTTTTAGGTCACATAATCCGCCCCTTGTAATAATCGGTGTAGTCCAGgttaacataaataaaatatgttacTGCACTGGGCTACTTATGCAAATATGTGAATCAAAGATTTGTCTTTGTGGTGTTGAATTCATGTGGAACATGTAATTGCACTATTGTtgatttctcttcttttttttttttgagggcagaaaaacaaagtgacaCTGCCTCGTTTGGTGTAAAACTTTGtagtgtaccttttttttttttttttaaaaacactgaaaaaattatactaaCTTATTTATGTTGAGCTTTTTGTTGTGGGTGTATGTATAGCTTCCCAAAGCGACaatttttgtaaatatatattttaatttttaagataaataaactgttgcaaAACTGAGCCTAATAATCGATTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792344.1 True 2100 mRNA 0.42 3 17109537 17112443

Neighbor

gene id symbol gene type direction distance location
sapcd1 NA coding downstream 121982 16983903 ~ 16987555 (-)
prdm4 prdm4,LOC102777312 coding downstream 130502 16972532 ~ 16979035 (-)
tmem209 tmem209 coding downstream 137090 16965571 ~ 16972447 (-)
ahcyl2b ahcyl2,LOC103371314 coding downstream 144593 16917305 ~ 16964944 (-)
strip2 strip2 coding downstream 196908 16882811 ~ 16912629 (-)
cdpf1 cdpf1 coding upstream 1565 17114008 ~ 17116453 (-)
pparaa ppara coding upstream 4310 17116753 ~ 17135130 (-)
atxn10 atxn10 coding upstream 84498 17196941 ~ 17207454 (-)
LOC120553673 NA coding upstream 96183 17208626 ~ 17220357 (-)
trim24 LOC103366983 coding upstream 109891 17222334 ~ 17234693 (-)
G228363 NA non-coding downstream 102537 16952943 ~ 17007000 (-)
G228360 NA non-coding downstream 159731 16914607 ~ 16949806 (-)
G228295 NA non-coding downstream 278298 16824829 ~ 16831239 (-)
G228290 NA non-coding downstream 362497 16746743 ~ 16747040 (-)
G228283 NA non-coding downstream 573244 16536018 ~ 16536293 (-)
G228401 NA non-coding upstream 24827 17137270 ~ 17138275 (-)
G228423 NA non-coding upstream 108762 17221205 ~ 17222228 (-)
G228439 kdm5a non-coding upstream 131022 17243465 ~ 17243980 (-)
G228474 NA non-coding upstream 160505 17272948 ~ 17275477 (-)
LOC120552976 NA non-coding upstream 289805 17402248 ~ 17402832 (-)
slc37a3 slc37a3 other downstream 88802 17007724 ~ 17020735 (-)
G228291 LOC103356441,LOC102298269,LOC102212027 other downstream 286105 16748842 ~ 16823432 (-)
G228191 NA other downstream 1317684 15771238 ~ 15791853 (-)
znf800b znf800,LOC103364713,LOC103355189,LOC108412280 other downstream 2019554 15055475 ~ 15089983 (-)
grm8a grm8 other downstream 2056252 14634110 ~ 15053285 (-)
G228465 NA other upstream 182679 17295122 ~ 17302198 (-)
tafa5a fam19a5,LOC103356475,LOC102793695 other upstream 718173 17830616 ~ 18100995 (-)
gramd4a gramd4,LOC103376144 other upstream 1250816 18363259 ~ 18421407 (-)
LOC120553633 slc2a13,LOC103369283 other upstream 1625953 18738396 ~ 18823090 (-)
sox5 sox5 other upstream 1916166 19028609 ~ 19270336 (-)

Expression


Co-expression Network