ssbp1 (ssbp1,LOC102786007)


Basic Information

Item Value
gene id ssbp1
gene name ssbp1,LOC102786007
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 6963276 ~ 6974561 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792345.1
CGTTAAactctaaagaagaagaagacatccGGTAGACTGTCGGGCTTTTGTTGAAGACGGACCGGAAACAGCGTGAGGTTACCAAAGTCTGCTCTGAAGTCTTGCACCTGaTCTGTCCCTAAAAAGTCCTCGGAGCTGTCTGCGCAGCACAGACAAGATGTTGAGAAGTGCCTCAGCACAGATCTTCAGACAGGTGGTGCGATACAGAAGCACAGACACCAGCCTCATCCTGGAGAGATCGATAAACCGTGTGCAGCTGTTAGGCCGAGTGGGTCAGGACCCAGTGATGAGACAAGTGGAGGGTCGTAACCCGGTTACCATCTTCTCCTTAGCAACCAATGAAATGTGGCGGTCTGGAGACGGAGAGATGAGTCCAACAGGTGACATCAGTCAGAAGACGACGTGGCATCGCGTGTCGGTGTTCAAACCTGGTTTGAGAGACGTGGCCTACCAGTACGTCAAGAAAGGgtCAAGGATTCTCGTAGAGGGGAAACTGGACTACGGAGAATATGTGGACAAGAACCAAGTCAGACGCCAGGCCACCACCATCATCGCAGACAACATCGTCTTCCTGAGCGACAACATTCGAGACAGAACTTGAAGCACTTTCTTCTTTGTCACCACCCAACAACAAGTCCACTTCTTTTTGTATTCTCTACAAAATAAAGACTGAGGCCCTGAACGCCACCAAGTAAAGGAACTGACTTACCCAAGGAGAAGGGGGACAGAATATGTTGTGACACTCCGGTCATATTTGACTGTGACGCCTCCCTGCAGAACTTGAGGCATCAAGAGAAGCTGAAAGAGCCCACTTGTGTAGTATAAATACACGTACTGATTATGGTTTTCTTTGTGCTACTTGTACTGAACCGTTAAAAGATACAGTTTATGCCCTTTTTCTGTGTACTCAAGTTTTATGTATGGGAATGTATGAGAATAATGTTGGAAATACAAGTTTGAGTCTAAAATGTTTTCACTGTGTTTGACGACTCGGTACAAGATGTTGTAGACGTAGCTCTGTTAACAGCAACTCTTACTCGTGTCCTTAGActaaggttattatagtttttcttcttttctaaatcAAATTGTTTCTAGGTGAGGAAAACTGTAAATCAGGAGTCTCAAACTACTAGTCTGATGGCCAGAGTTGTCCTTTTTTATATGTTTGCAAGGAACTATTTGCAGCTGCATTTAATGGGATTTTTTGAcagtaagaaaaatatagatcATCACCAGATGAAAGTATTTGTTCCTTCTTGTAATATGTCTCACTTGTCgctgtctctcttttcttcaTGTATTTCTCTGGTAAATGAAAGTTGTTCCACTGGAGAGAAATGTGCGTGTTTACTGAAACTGCTCGAGAGGCCAGCATGAAAATTTAGAGGAAGCACGTTCAATTAAATTCACCATATTTCCCCCCTGTTATAACGGAAcattaatgtatgtatttgaTGTTTTATCTACTCCTGTTGTCTGctttgtcattttctttcagTTATCACACTTATCTGTTTTTCATTTCCTTCCTGGGCAGTGACTTGTTGATTTCAGCTCACACTGCTGGTTCATTTCTCTGTAATGGTTGCTATAATAGACCTTATTTTCTAGACTGCT

Function

symbol description
ssbp1 Predicted to enable single-stranded DNA binding activity. Predicted to be involved in mitochondrial DNA replication and positive regulation of helicase activity. Predicted to act upstream of or within DNA replication. Predicted to be active in mitochondrial nucleoid. Human ortholog(s) of this gene implicated in optic atrophy. Orthologous to human SSBP1 (single stranded DNA binding protein 1).

NR:

description
PREDICTED: single-stranded DNA-binding protein, mitochondrial-like

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005739 mitochondrion cellular_component
GO:0003697 single-stranded DNA binding molecular_function

KEGG:

id description
K03111 ssb; single-strand DNA-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792345.1 True 1620 mRNA 0.43 7 6963276 6974561

Neighbor

gene id symbol gene type direction distance location
creb3l2 creb3l2 coding downstream 1182 6926311 ~ 6962094 (-)
dgki NA coding downstream 42664 6840140 ~ 6920612 (-)
LOC120553692 NA coding downstream 131564 6824521 ~ 6831712 (-)
rassf3 rassf3,LOC102298244,LOC102210289,LOC103364097,LOC106956171,LOC103129390 coding downstream 139371 6747501 ~ 6823905 (-)
zgc:194209 LOC103375033,LOC102787798,LOC102205194,LOC101467670 coding downstream 217291 6736606 ~ 6745985 (-)
c23h12orf56 NA coding upstream 56651 7031212 ~ 7048093 (-)
eri1 eri1,LOC103356631,LOC102785739 coding upstream 179239 7153800 ~ 7160787 (-)
tmcc3 tmcc3 coding upstream 188445 7163006 ~ 7208199 (-)
ndufa12 ndufa12 coding upstream 238835 7213396 ~ 7216409 (-)
LOC120553227 fgd6,LOC103356634 coding upstream 243239 7217800 ~ 7240443 (-)
G226216 NA non-coding downstream 37031 6924031 ~ 6926245 (-)
G226199 NA non-coding downstream 228006 6732438 ~ 6735270 (-)
LOC120553101 NA non-coding downstream 274454 6634650 ~ 6688822 (-)
G226113 NA non-coding downstream 520952 6442038 ~ 6442324 (-)
G226083 NA non-coding downstream 1129062 5833734 ~ 5834214 (-)
G226244 NA non-coding upstream 54187 7028748 ~ 7028958 (-)
G226259 NA non-coding upstream 90064 7064625 ~ 7072997 (-)
G226273 NA non-coding upstream 127377 7101938 ~ 7107207 (-)
LOC120553545 NA non-coding upstream 127951 7102512 ~ 7105702 (-)
LOC120553544 NA non-coding upstream 131176 7105737 ~ 7107199 (-)
G226200 gns other downstream 232494 6730307 ~ 6730782 (-)
LOC120553807 LOC104934913 other downstream 1700224 5242890 ~ 5263052 (-)
cpm cpm,LOC106925010 other downstream 2180517 4756921 ~ 4782759 (-)
LOC120553649 NA other downstream 2423479 4529987 ~ 4539797 (-)
G225751 NA other downstream 2912085 4047316 ~ 4051191 (-)
tmem243b tmem243 other upstream 99332 7073893 ~ 7086322 (-)
meig1 meig1 other upstream 112383 7086944 ~ 7089168 (-)
usp44 usp44,LOC102783730 other upstream 294476 7269037 ~ 7278324 (-)
LOC120553151 LOC107386793,LOC104950937 other upstream 447604 7422165 ~ 7494307 (-)
G226495 LOC103356655,LOC105934024 other upstream 914010 7888571 ~ 7891311 (-)

Expression


Co-expression Network