hmga2 (hmga2)


Basic Information

Item Value
gene id hmga2
gene name hmga2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 25695881 ~ 25753815 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792422.1
TCGCTGCTGCATGGTCCTTCCCGGTGCCACGGTGTGCTGTAGCCGAGTTTGAGCCGCTCGGCGTCTCGGACTCCGCCGTTCCCGGTGCTCCGTCTTCTTAATGCTCGCTGAGCCAAACCTTCCAGCTGCTCACTGGCTTATTTTGATCAAAAGCCGTCAGCCCTGCTGCCTGGGACAGACTTTACAAGTAGACAACGGACCGGTTTAAAGTGCCGTTGAAACTATATCCACATCGGACTCcctctatttctttcttttctgttcACCGGGAGAACGGAGGAGCCGCAGCACCGGGAACCATGAGCGGACGCGGGGACGAGCCAGGGGAGAGCTCTGGCTCTCAGGAGCCCGCGGGGCCCGCGGAGCCCCAAAAGAGGAGGCCGGGGAGACCGAGGAAACCACAAAAAGAGCCCAGTGGAGAGCCTGTCCCCAAGCGACCGAGGGGCCGCCCCAAAGGAAGTAAGAACAAGGGCCCCTCCAAGGCAGCGCAGAAGAAAGCTGAGGCAACCGGGGAGAAAAGACCCAGGGGGCGACCCAGGAAATGGCCACAGCAAGTCGTCCAGAAAAAGCTTGCTCAGgaagaggaagaagaagaagaagaggctgGAGAGTCCCCAGAGGAGGACTAAGCTACCACACCATCAAATCGCTACCTCATTCAGCTGTCAGGTCTTTCAAAGGGAAAAGACTGCCttgaccactttttttttttttttactttttccacaTGCTATGTTACTTGGTTTAATTTCAGTTAGACAATTTCCATCTTTTCTCTGTCACTGAACAGGCAGATGTTCAGTATTATGTCTTTGTCTTTAAACTCCtttgatacatttttacataGACCATGCGGAATGCagcaaaaataatcttttagtTTGCTGCCAGCTCTTATTGGCTGAAGAGATACAAACAAGCAAACGGTTCAGCTCTAGACATTCTGCCTGTTGTAACAAACACATCAGACATGTCATCAGCCCTGTGCAACACAATTGCACTCCTCAACGAGAATAGACTAGAAACAAACCGAAACAGACACAATCAGTAAGTTCATGTTTGGGTTTTCTTTAGGCCATCGTCGTCTCCACATGAGCGAGAGCATTGGGTGCATCAGCCTGAGGACTACAATATTGTAATGAGGTGCAAATCAAATACACTCACACTGCcactgcatctctctctctctctctctctctctctctctctctctctctctctctctcatggacAGACATACAGTAGATCCACACACTCAATGACTCACTGCCATTGTTGACTGATACTCCAGACACTGATGGCCGAAAAAGAGACTGGGAAAGTCTGGTTTTGTCCTACAGACATGTAGAACAGCTGTCTACTGTCCTAATATATCAGTGTTGGCTCTAAAACAAACCAATCCACCCACCCCTTACCCAAACTGGTGTTAGGCCACcaaacacaaagagacagagatggtTCCTCAGGGCAGTATGTTTATCCATTATGTTGGATTCAAgccatttagaaaaaaaacttaCTGAAGTCGTTCGCATTGGCTCATATTTAACTTTAGCATTGGAATGagagcacattacattacatttgaaaAGGCCATCTTCCAGTAACTTCTCTCTCTGGCAATATGCAGGAAAGATACAGCCTCCAATGCAACGTTTTATCAAGTTTTATTGACAGTGCAAATGTAGCTGATGTAACCATGGCCGATGCCCAGCCATGCCCTTAATCAAACATCAGTCAAGGATTAGttgcttaaagctatagtgcgtagtttctgtcgccccccatgaggaattctaagcaatgacaataaaaca
>XM_039792423.1
TCGCTGCTGCATGGTCCTTCCCGGTGCCACGGTGTGCTGTAGCCGAGTTTGAGCCGCTCGGCGTCTCGGACTCCGCCGTTCCCGGTGCTCCGTCTTCTTAATGCTCGCTGAGCCAAACCTTCCAGCTGCTCACTGGCTTATTTTGATCAAAAGCCGTCAGCCCTGCTGCCTGGGACAGACTTTACAAGTAGACAACGGACCGGTTTAAAGTGCCGTTGAAACTATATCCACATCGGACTCcctctatttctttcttttctgttcACCGGGAGAACGGAGGAGCCGCAGCACCGGGAACCATGAGCGGACGCGGGGACGAGCCAGGGGAGAGCTCTGGCTCTCAGGAGCCCGCGGGGCCCGCGGAGCCCCAAAAGAGGAGGCCGGGGAGACCGAGGAAACCACAAAAAGAGCCCAGTGGAGAGCCTGTCCCCAAGCGACCGAGGGGCCGCCCCAAAGGAAGTAAGAACAAGGGCCCCTCCAAGGCAGCGCAGAAGCCACAGCAAGTCGTCCAGAAAAAGCTTGCTCAGgaagaggaagaagaagaagaagaggctgGAGAGTCCCCAGAGGAGGACTAAGCTACCACACCATCAAATCGCTACCTCATTCAGCTGTCAGGTCTTTCAAAGGGAAAAGACTGCCttgaccactttttttttttttttactttttccacaTGCTATGTTACTTGGTTTAATTTCAGTTAGACAATTTCCATCTTTTCTCTGTCACTGAACAGGCAGATGTTCAGTATTATGTCTTTGTCTTTAAACTCCtttgatacatttttacataGACCATGCGGAATGCagcaaaaataatcttttagtTTGCTGCCAGCTCTTATTGGCTGAAGAGATACAAACAAGCAAACGGTTCAGCTCTAGACATTCTGCCTGTTGTAACAAACACATCAGACATGTCATCAGCCCTGTGCAACACAATTGCACTCCTCAACGAGAATAGACTAGAAACAAACCGAAACAGACACAATCAGTAAGTTCATGTTTGGGTTTTCTTTAGGCCATCGTCGTCTCCACATGAGCGAGAGCATTGGGTGCATCAGCCTGAGGACTACAATATTGTAATGAGGTGCAAATCAAATACACTCACACTGCcactgcatctctctctctctctctctctctctctctctctctctctctctctctctcatggacAGACATACAGTAGATCCACACACTCAATGACTCACTGCCATTGTTGACTGATACTCCAGACACTGATGGCCGAAAAAGAGACTGGGAAAGTCTGGTTTTGTCCTACAGACATGTAGAACAGCTGTCTACTGTCCTAATATATCAGTGTTGGCTCTAAAACAAACCAATCCACCCACCCCTTACCCAAACTGGTGTTAGGCCACcaaacacaaagagacagagatggtTCCTCAGGGCAGTATGTTTATCCATTATGTTGGATTCAAgccatttagaaaaaaaacttaCTGAAGTCGTTCGCATTGGCTCATATTTAACTTTAGCATTGGAATGagagcacattacattacatttgaaaAGGCCATCTTCCAGTAACTTCTCTCTCTGGCAATATGCAGGAAAGATACAGCCTCCAATGCAACGTTTTATCAAGTTTTATTGACAGTGCAAATGTAGCTGATGTAACCATGGCCGATGCCCAGCCATGCCCTTAATCAAACATCAGTCAAGGATTAGttgcttaaagctatagtgcgtagtttctgtcgccccccatgaggaattctaagcaatgacaataaaaca

Function

symbol description
hmga2 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be located in chromatin. Predicted to be active in nucleus. Is expressed in several structures, including cardiovascular system; head; nervous system; pectoral fin bud; and pronephric duct. Human ortholog(s) of this gene implicated in Silver-Russell syndrome; leiomyoma; lipoma; and ovarian cancer. Orthologous to human HMGA2 (high mobility group AT-hook 2).

NR:

description
PREDICTED: high mobility group protein HMGI-C

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792422.1 True 1817 mRNA 0.48 5 25695881 25753815
XM_039792423.1 False 1766 mRNA 0.47 4 25695881 25753815

Neighbor

gene id symbol gene type direction distance location
lemd3 lemd3,LOC104964688,LOC106576661 coding upstream 55791 25621443 ~ 25640090 (+)
tmbim4 tmbim4 coding upstream 81436 25608506 ~ 25614445 (+)
cdnf LOC104964768 coding upstream 121859 25568539 ~ 25574022 (+)
prl2 LOC104964766,LOC103356682,LOC100697904 coding upstream 142880 25546940 ~ 25553001 (+)
LOC120553524 dennd5b,LOC102198357 coding upstream 204149 25402355 ~ 25491732 (+)
dera dera coding downstream 14922 25768737 ~ 25779615 (+)
il17ra1a NA coding downstream 392092 26145907 ~ 26158913 (+)
LOC120553199 LOC104965315 coding downstream 462326 26216141 ~ 26219357 (+)
cnot4b NA coding downstream 468974 26222789 ~ 26253935 (+)
braf braf coding downstream 633000 26386815 ~ 26427044 (+)
G230404 NA non-coding upstream 76622 25618202 ~ 25619259 (+)
G230401 NA non-coding upstream 79210 25595592 ~ 25616671 (+)
G230339 NA non-coding upstream 191445 25503664 ~ 25504436 (+)
G230337 NA non-coding upstream 195672 25499847 ~ 25500209 (+)
G230336 NA non-coding upstream 200482 25495148 ~ 25495399 (+)
G230417 NA non-coding downstream 23196 25777011 ~ 25777634 (+)
G230418 NA non-coding downstream 34791 25788606 ~ 25789256 (+)
LOC120553708 NA non-coding downstream 44174 25797989 ~ 25801309 (+)
G230488 NA non-coding downstream 301708 26055523 ~ 26055735 (+)
G230510 NA non-coding downstream 372217 26126032 ~ 26126398 (+)
msrb3 msrb3 other upstream 33062 25641840 ~ 25662819 (+)
LOC120553523 NA other upstream 321885 25362882 ~ 25373996 (+)
G230148 LOC102781993,LOC101465723 other upstream 917623 24620812 ~ 24778258 (+)
LOC120553083 NA other upstream 1381174 24309542 ~ 24314707 (+)
LOC120553686 LOC105929833,LOC107382334 other upstream 1750241 23934300 ~ 23945640 (+)
LOC120553706 NA other downstream 56592 25810407 ~ 25812828 (+)
arhgef39 arhgef39 other downstream 284373 26038188 ~ 26106823 (+)
mrps33 mrps33,LOC106591474 other downstream 618899 26372714 ~ 26381109 (+)
LOC120553759 NA other downstream 939541 26693356 ~ 26971853 (+)
LOC120553194 NA other downstream 1315262 27069077 ~ 27072552 (+)

Expression


Co-expression Network