LOC120553731 (LOC105357099,LOC107105006,LOC108233212,LOC103459183)


Basic Information

Item Value
gene id LOC120553731
gene name LOC105357099,LOC107105006,LOC108233212,LOC103459183
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10160731 ~ 10161654 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792425.1
ggggtggCCTCCCTGGCACCCCCTGCACCACCACCAGTGGGCGCTGCCCCACCCTGCTGCCGCCCAGTTGGAATCATGCACCTCCTGCGCCTGGGTCTCCTGGCCTTCAGCTGCCTCTTCTGGGCAGCTGGTTTGGGCATCTTAAGCCTGGGTGTGTGGGCACAGATTTCACTGGCAGACTACATGTTGCTGTCTGCCAATCGCTACCCCAACGCCCCGGTCATCCTTTTGTCCACAGGTGCAGCCATCACCGCCTGGGGCTTCCTGGGTTGTCTAGGGGTGGCTGCAAATCTCCCCTGCGTGCTCAGGGCTTACGGGTTTTTTCAACTTGCTGCACTAATAGCCGGTTTGGCAGCTGGACTCTCAGGTCTCTTCTATCGCGAAGACATTGCCGGAGGATTTCGCAGCGGTTTACAGCGAGCGGTGGCAGGCTACACGGAGGATGAGGGCCGTGCCGATGCATTAGACAGCCTGCAGAGGTCCCTGGAGTGTTGTGGAGCTGATGGTTGGCGTGACTGGCTCACTTCGGACTGGGCTATCCAGCATATGACCTTCCTGCCCAACGAGAACGGCACTTCTGTGTCCCTGCCGGACAGCTGCTGCGTGAGGCGCAAGGGCTGCAAGAATCGACCTCTTCTGTCGGATGATGTTGAAGGAGTAGCTGCTGCAGGAATCCATCCCCATGGCTGCTTCCGCAAAGTCTTTAGTTTGGTCAACGACAACGTATTCCACATTGCCGCCACAGTGTTAGGATTGGCCTTCACTCAAATCGGAGGCATCGCCCTGGCTTGTCTGCTGGCCAAGAAACTGGCACCAAGACAACATCGACGTGTGGTGGCACATTAATggtcaattaaaaaaattaggcaAACCATGCCAAGGAATGACCAATTAGTAGATAATTAGGATTGGGAATGAACTACG

Function

NR:

description
tetraspanin-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792425.1 True 924 mRNA 0.56 1 10160731 10161654

Neighbor

gene id symbol gene type direction distance location
foxm1 foxm1 coding upstream 13160 10140782 ~ 10147571 (+)
LOC120553300 NA coding upstream 44104 10108319 ~ 10116627 (+)
LOC120553783 LOC104962829,LOC102309285,LOC102208629,LOC100697441,LOC102795594,LOC101464871 coding upstream 52930 10104931 ~ 10107801 (+)
LOC120553071 NA coding upstream 57126 10100696 ~ 10103605 (+)
chrm2a chrm2,LOC103140231,LOC106927335,LOC100534441,LOC102208075 coding upstream 130827 9952600 ~ 10029904 (+)
def6c LOC103371612 coding downstream 3843 10165497 ~ 10174114 (+)
LOC120553550 mcat,LOC102779964 coding downstream 13489 10175143 ~ 10183282 (+)
ttll1 ttll1,LOC102779306 coding downstream 25764 10187418 ~ 10197239 (+)
trnay-gua_57 NA coding downstream 30672 10192326 ~ 10192412 (+)
trnay-gua_58 NA coding downstream 32776 10194430 ~ 10194516 (+)
LOC120553125 NA non-coding upstream 224138 9934175 ~ 9936593 (+)
G226930 LOC104947167 non-coding upstream 292646 9867575 ~ 9868085 (+)
G226921 mtpn non-coding upstream 334206 9796473 ~ 9826525 (+)
G226922 NA non-coding upstream 354129 9806242 ~ 9806602 (+)
G226918 NA non-coding upstream 406615 9751944 ~ 9754116 (+)
G227088 NA non-coding downstream 376542 10538196 ~ 10538689 (+)
G227107 tcp11l2,LOC102777109 non-coding downstream 463792 10625446 ~ 10627982 (+)
G227108 NA non-coding downstream 467154 10628808 ~ 10630212 (+)
G227116 NA non-coding downstream 504055 10665709 ~ 10667280 (+)
G227139 NA non-coding downstream 544256 10705910 ~ 10709545 (+)
ndufb2 ndufb2,LOC102790702 other upstream 919382 9237226 ~ 9241349 (+)
lhfpl3 lhfpl3,LOC101483460 other upstream 987511 9134594 ~ 9173220 (+)
rps16 rps16,LOC103382554 other upstream 1728034 8426635 ~ 8432697 (+)
LOC120553156 LOC104945813 other upstream 2591428 7566655 ~ 7569303 (+)
LOC120553154 LOC104945813,LOC103356648 other upstream 2628654 7525892 ~ 7532077 (+)
G227121 kera other downstream 535600 10697254 ~ 10699718 (+)
G227141 dcn,LOC103382665 other downstream 570415 10732069 ~ 10737503 (+)
impdh1b LOC104968094,LOC103355171,LOC102293685,LOC102194436,LOC104918784 other downstream 786631 10948285 ~ 10986201 (+)
G227216 NA other downstream 941182 11102836 ~ 11112905 (+)
G227278 LOC104928793 other downstream 1527515 11689169 ~ 11757317 (+)

Expression


Co-expression Network