LOC120553739 (ascl4,LOC103372058)


Basic Information

Item Value
gene id LOC120553739
gene name ascl4,LOC103372058
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 16980006 ~ 16980757 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792432.1
AAGAAGTGCCCACTTACTCATAAGAGATCACAATCTAGTAATTTAATTACAAAGCGGCGAGATTTAAAAGGAAACTCTTGCTGAAAACCCGAGATGACTGTGAGGAGTCTCTGACAGGAGAGATGTCTTATCACAGTAAGGAGTTAATGGAGCCGGTTCCATATGTCCCTCCACTGGCTCTCCGCGGCTTTTCCATGGACAACAGTGGAGCACACTACAAGGATGCGCTTCGACTTGGACTGCCCTTGCACCTGGAAGCTGGATACCTTGACCCTGTGCACGGCCAGAGGTTACCCTACAGACAATTATCCTATTTCCCCTTCCACGTCCCCCTCGGTGTTTGTGATTATTCCTTTGAGCCAGCGTTCATCCGGAAAAGGAACGAAAGGGAGCGGCATCGAGTGCGCTGCGTAAACGCGGGTTACGCGCGGCTCAGAGAGCATCTGCCGCAGGAGTTTGAGGACAGACGGCTCAGCAAAGTGGAGACACTGCGGGCGGCTATTGACTATATCAAACACCTGCAGAGCCTGCTGGACTTAAACGTGTCTGGGATGGAGATGTCACTTGGAGACGCGTGTAACCGTGCGCAGCTGCCGCAGAGGACAGAGTGTAACAGTGATGGAGAATCCAAAACTGGCCTCAGCGACAGTGGGGAAATAGTTgactaa

Function

symbol description
ascl4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of RNA polymerase II transcription regulator complex and chromatin.

NR:

description
PREDICTED: achaete-scute homolog 4

GO: NA

KEGG:

id description
K09067 ASCL; achaete-scute complex protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792432.1 True 668 mRNA 0.52 2 16980006 16980757

Neighbor

gene id symbol gene type direction distance location
tnnt2e NA coding upstream 125132 16833664 ~ 16854874 (+)
dock4b NA coding upstream 506333 16358792 ~ 16473673 (+)
gpr85 gpr85,LOC106576049 coding upstream 759421 16216041 ~ 16220585 (+)
LOC120553010 NA coding upstream 766129 16213082 ~ 16213877 (+)
ppp1r3aa NA coding upstream 803845 16163395 ~ 16176161 (+)
cdkn1d NA coding downstream 20188 17000945 ~ 17005314 (+)
LOC120553296 LOC103372063 coding downstream 41135 17021892 ~ 17032722 (+)
wnt7ba wnt7b,LOC106575957 coding downstream 207429 17188186 ~ 17196857 (+)
LOC120553078 LOC104966316,LOC103366982,LOC104933494 coding downstream 253255 17234012 ~ 17237437 (+)
kdm5a NA coding downstream 257178 17237935 ~ 17260868 (+)
G228326 LOC106583082,LOC106565661 non-coding upstream 60435 16917000 ~ 16919571 (+)
G228328 strip2 non-coding upstream 92443 16882838 ~ 16887563 (+)
G228272 NA non-coding upstream 147885 16831604 ~ 16832121 (+)
LOC120553146 NA non-coding upstream 218845 16477197 ~ 16761161 (+)
G228276 NA non-coding upstream 367301 16612502 ~ 16612705 (+)
G228353 NA non-coding downstream 27045 17007802 ~ 17010730 (+)
G228354 NA non-coding downstream 32924 17013681 ~ 17014664 (+)
G228355 NA non-coding downstream 34321 17015078 ~ 17015306 (+)
G228356 NA non-coding downstream 36788 17017545 ~ 17017992 (+)
G228374 NA non-coding downstream 129011 17109768 ~ 17112423 (+)
G228335 ahcyl2,LOC103371314,LOC107725924,LOC107656398 other upstream 57183 16919663 ~ 16922823 (+)
morn2 morn2 other upstream 63078 16880276 ~ 16916928 (+)
stmp1 NA other upstream 112210 16866310 ~ 16867796 (+)
cald1a LOC102212027,LOC102781594,LOC102298269,LOC103382882,LOC106941466,LOC103156466,LOC101472471,LOC106916645,LOC106525550,LOC107395349,LOC103356441 other upstream 148763 16771058 ~ 16831243 (+)
tmem168a LOC103368481 other upstream 699945 16267136 ~ 16280061 (+)
srr srr,LOC105936311,LOC103459528 other downstream 1549379 18530136 ~ 18533114 (+)
LOC120553630 muc19 other downstream 1842075 18822832 ~ 18855314 (+)
LOC120553164 NA other downstream 2372226 19352983 ~ 19355551 (+)
G228784 LOC103359233,LOC104943309,LOC100709697 other downstream 2429733 19410490 ~ 19413704 (+)
LOC120553210 LOC104943308 other downstream 2651180 19631937 ~ 19839382 (+)

Expression


Co-expression Network