nopchap1 (LOC104942935)


Basic Information

Item Value
gene id nopchap1
gene name LOC104942935
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24566241 ~ 24571321 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792452.1
ATTGCAGAGCGCAAGCGCAGGCACCTtggtgttatttagttatttttatcATAAAAATCTTTGGTTCGTTACTTTTTCTGATAGCTTCCGTAAACATGAGGAGTTGTAACGATGTTTTAATGGTCTGGTTGTTTATTAGCGTTAATGTTCGTTGTCTGTGCGATTTTACAGCCAACTTCACACAGTCTAATTTCGTGAAGTCTTCCGAAACAGGAGAGGGTGCTATGTTTATTTTCTTGCCATCCACAACGGAAACCACCCGGATGTTGCTTTTAGTAGttagctaatacatccatgagtgaGACACATGTCGACACAAACGTTGCCTCTAAAATGGAATTAAACGTCAAGAAAACGAGTTCAAAGGCGTTGCTTTCATGTGGGAACGGACAAGGTCTCAGTGAGAAGCTTCTCCTCAAGCCAAAGGCTGGCAGACCCCCGCAGACGGAGAGAGTCCCGAGGAGCAGCGtgttgGAGCGGCTGCAGAGCTTCCTGCCTCAGATGGCCGCGGCCAATGAGAAGCTGAAGCAGCAGATGGACGAGGCTCCGGCTGGACGCTTCGACATCGAGAGCGTGGAGGGGGCCGAGAAGGTCATAGAGATGGACGTAGCGCTGGTGGAGCTCAGCGGGTCCGACAGCGACTCAGAAGATGGAGAGGAGACGTCGGAGGAGGACTCCGGCGAGGAGAGCGACGTCACAGAGCAGAACCTTAAACTACCGGGAGACAACGGCAAGAGGAAGAAAGCCTTCATCCAGGTTCTCCATCCACCGGGAGAGTAGAGAAGGTGGCGCCACAGACTTTTTGGCTGCGTGTTGAGTTCCTTTTCCGCATGAGGTGATGCGGGTTTAAACTGACCAGGGACAAAAACCTCTGCCTGCCTCAGGCGTGGAGTGATTTCAACCTacttcacagacacagagacagagaacagGAAGACACAGATCTTCCTCCTCTCATCCCTATGGGAACAAATATCATTTTGTACATTTAAGGCTCACAGCTGCAAAAGTGCCTTTGGAGCCAGAACAGATGCTCTGATTACCTCATCAGCTGACCTCTGAGTGGACATAATgtgcagggtttcccccagaaaagccCGAtggcaagtgtttttttttcgtcAAGGGCCCGGCTGGGGCCGGTcccagactgatggcagcattaatgtagagcccaataacagaatcatggacgGAATCGGGACATTGTGAGTTTTAAAAAGCTAATGGCTCTAAAGGCTCTACATtgagtcagtgctaaaagctaactggagattcaAAAATATGACTGTGTCTAAGTTTCCAACCGAGCCGCCCCACTGCaactgttgttaaaaaaaaaaaaacacacacacacccagtggCTAAGGCCTGGTGGGGGGCAATTTATGCCCGGTGGGCCACCTGGTTTacaatacactgggggaaaccctgatgTGTTTAGGCGTAATACTCGCCTTGTTTGTTGGCCTCTGTTCATAGTTTCATCAGTTTAGGCCGCAACGTATTGTGTATTGTGCTTTCATGAAGCACAGTTGGGATCTTCTCAAGGAAGATAGattaccagattttttttttttacatggcaATCCAAATAAAGCCTCTGTGCACAAGC

Function

NR:

description
PREDICTED: uncharacterized protein C12orf45 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792452.1 True 1615 mRNA 0.48 4 24566241 24571321

Neighbor

gene id symbol gene type direction distance location
chst11 chst11 coding upstream 87478 24384898 ~ 24478763 (+)
LOC120553464 LOC107381693,LOC105020203 coding upstream 200892 24320276 ~ 24365349 (+)
ift46 LOC107372934 coding upstream 257797 24301765 ~ 24308444 (+)
mkln1 mkln1 coding upstream 316734 24209619 ~ 24249507 (+)
asb13a.1 LOC103363234,LOC100709988,LOC105929846,LOC101482319,LOC102215476,LOC108241840 coding upstream 632365 23924156 ~ 23933876 (+)
LOC120553040 NA coding downstream 26029 24597350 ~ 24604947 (+)
LOC120553385 NA coding downstream 49544 24620865 ~ 24635265 (+)
LOC120553387 NA coding downstream 160875 24732196 ~ 24749828 (+)
LOC120553386 NA coding downstream 202180 24773501 ~ 24788753 (+)
LOC120553142 NA coding downstream 258877 24830198 ~ 24835745 (+)
G230109 NA non-coding upstream 80724 24482310 ~ 24485517 (+)
G230011 NA non-coding upstream 302176 24260059 ~ 24264065 (+)
G229994 NA non-coding upstream 450120 24112965 ~ 24116121 (+)
LOC120553514 NA non-coding upstream 471076 24088025 ~ 24095165 (+)
G229976 net1 non-coding upstream 499252 24065214 ~ 24066989 (+)
G230192 NA non-coding downstream 224632 24795953 ~ 24798741 (+)
G230249 NA non-coding downstream 613491 25184812 ~ 25191943 (+)
G230260 NA non-coding downstream 780556 25351877 ~ 25352174 (+)
G230259 NA non-coding downstream 805026 25376347 ~ 25377601 (+)
G230327 NA non-coding downstream 864830 25436151 ~ 25494355 (+)
LOC120553083 NA other upstream 251534 24309542 ~ 24314707 (+)
LOC120553686 LOC105929833,LOC107382334 other upstream 620601 23934300 ~ 23945640 (+)
adm2a NA other upstream 717617 23833018 ~ 23848624 (+)
kcnc2 kcnc2,LOC100689973,LOC101475944 other upstream 1125578 23315421 ~ 23440663 (+)
phlda1 phlda1 other upstream 1823062 22739717 ~ 22743179 (+)
G230148 LOC102781993,LOC101465723 other downstream 49491 24620812 ~ 24778258 (+)
LOC120553523 NA other downstream 791561 25362882 ~ 25373996 (+)
msrb3 msrb3 other downstream 1070519 25641840 ~ 25662819 (+)
LOC120553706 NA other downstream 1239086 25810407 ~ 25812828 (+)
arhgef39 arhgef39 other downstream 1466867 26038188 ~ 26106823 (+)

Expression


Co-expression Network