LOC120553760


Basic Information

Item Value
gene id LOC120553760
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 11812027 ~ 11822653 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792456.1
TAGGTGGAGTCCAGATCCACTCCATACCAGTTGGTATTAATGCACAATAATATTGTTTGCCAACAGCcataaaacatcaaaaagaagagaaagaagacgaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagacgATATGGCGACTGCCAGCTGTCTGCTGTCAGAGGAGAAGTTCctgtgttctgtctgtctggatgtgttcactgaGCCAGTCTCAACGCCCTGTGGACACAATTTCTGTAGTGCATGTATTCATACGTATTGGGACGGGTGTGACATTTACCAGTGTCCTTTATGCAAAACGCCATTTTCTCCAAGACCTGAACTCCAAGTCAACACTGTCATGTCTGAGTTAGCTGCTGAGTTTAAGACATTAGTTCGAATCAAAGCCTCAACTCCAGACCCACATCTCCCTGGATCAGCAGACGTTCTTTGTGACATCTGCTCTGAGATGAAGCTAAATGCTGTTAAATCTTGCCAGACGTGTCTAGTGTCTTTCTGTGAAATGCACCTTGAGCCACATCATAGAGTTGCTGCTCTCAAGGGCCACACATTATTAGACCCTGTGAAGAATCTTGATGACAGAATGTGCAAGACGCACAACAAGACAACAGAACTGTACTGCAGGACTGAGCAggcctgtatctgtgtctcgtGTTTCAAAACCGATCACAAGAGTCACAACGTTGTCCCACTTGAGGAAGAATATGAAGCAATGATGGCAAGAAAAGATGAGACCATGGCAAATATCCAACAGACCATACAATCACGGTCCAAGAAAATAGCTGAGATTGAAAACTCTGTTGACGTCAGCCAAAGAGAagctgagaaagagaaagaaaccagTGAGCAGGTCTTCACTGACTTGATCCGCTCCCTCCAGAGAAGCCAGGCCGAGCTTGCTGAGGTGATTGAGGAGAGGTACAGAGCAACAAAGCAAAAGGCTGAAGGTTTTCTCACAGAACTGAGGATGGAGATCGCTGAGCTCGAGAGCAGAAGCACCCAGCTGGAGCAGCTGTCACGTTCTGAGGATCACCACCATTTTCTCCAGAGCTTCCCAACCTTGTGCTCCCCTTTAAACAAGGACTGGGCCAAGATTGGTGTTCACAGCGATCTGTCTTTCAAGGCAGTGAAAGGAGCTATGACGCAGCTGAAACAGAAAGTTGATGAAATAATGGAAGAGCTTCCTgagatcaaaatgaaaaaaatgagagAACATGCAGTGgacttgacctttgaccctgacACAGCATTTTGCTCACTTGTCATAAGCCAGGATGGAAAACAGGTGAAAGATGTAGACACGGAACAGAATCTTCCCGACAGCCCAAAGAGATTTAAAGTGTTTTCAGATATTTTGGCAAAGGAGGGATTCACAACAGGGAAGTTTTACTATGAAGTGCAAGTGAAAGGAAATACTGACTGGATTCTTGGAGTGGTCAAAGAGTCTGTTGATAGAAAGGAGGAAATAGCTCTGTCAGTTAAAAATGGTTACTGGACCATTGGGCTTGATGACAGTATATATTATGCATACACAAAAGCAAGTGTTAAAATCACACTAAAAGAAAAGCTTGAGAAGGTGGGCGTCTTTGTGGACTATATTAAGGGAGTGGTTTCTTTCTACAATGTGAATTCTAAATCAAATATCTATTCTTTCACTGGCTGCCACTTTACAGAGAAACTGTATCCATACTTCTGCACTCAAGGCAACACAAATGGAACAAACTCTGCCCCGATCATCATAACCCCTGTTCCTCAAACACACTGAGTTTGTTCTTTCTTTAAAAACCACGGAAAAATGAACATTGGTCTCTTTTTACACACTTAacaggggtccgtttcagaaaaCGGGTTTAGTGAAAACTAAATGTTATATTGGTAATCTACTGATCTCTTTATCTACAGGTTCTactttactgtaaatgtgtaaatgtaaacTACTGATTCTAATGTTACACAGTAATGTTGTCAGATCTTGTAGTATAATGGGGATATAATTTAATGTTACTTTAATAAGACAAAACAAAGCATGCTGTCAGTGATTGTTAAATTGTGATTTTCCTGCAAAATCACATCACACAGATCTCCTTGGCCCTTTGAATCCAGCCATACTGTTTATAGCCACTACCCTGACTACGATTTATCAGATGGAAAATTACAGAAAGGGACAGTACTGGGAAGACCAGTGTGTACGCAGTCTTCATTTTGCTTTGTTCTTGTAATTTGCAGTGGCTTTGTGCATTTGACAAGTTTGTGTAAATAAACTGCACATTAAGACTGA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792456.1 True 2327 mRNA 0.42 3 11812027 11822653

Neighbor

gene id symbol gene type direction distance location
pax4 NA coding upstream 355435 11453460 ~ 11456592 (+)
lrrc4.1 LOC104918788,LOC103365345,LOC100694050 coding upstream 444072 11362763 ~ 11367955 (+)
LOC120553009 NA coding upstream 788269 11019226 ~ 11023758 (+)
si:dkeyp-38g8.5 NA coding upstream 1137976 10672048 ~ 10674051 (+)
scyl2 NA coding upstream 1153016 10648321 ~ 10659011 (+)
LOC120553244 LOC103365396,LOC108235086,LOC101484317,LOC107085982 coding downstream 3656 11826309 ~ 11836976 (+)
mettl25 mettl25 coding downstream 30027 11852680 ~ 11864699 (+)
tmtc2a tmtc2 coding downstream 49894 11872547 ~ 11929466 (+)
LOC120553241 NA coding downstream 119212 11941865 ~ 11957172 (+)
slc6a1l LOC103365402,LOC105916091 coding downstream 143817 11966470 ~ 11981128 (+)
G227267 NA non-coding upstream 184084 11624235 ~ 11627943 (+)
G227251 NA non-coding upstream 351527 11460113 ~ 11460500 (+)
G227221 NA non-coding upstream 624245 11186939 ~ 11187782 (+)
LOC120553063 NA non-coding upstream 719353 11092190 ~ 11092674 (+)
G227217 NA non-coding upstream 757832 11043412 ~ 11054195 (+)
G227338 iqsec3 non-coding downstream 167447 11990100 ~ 11992952 (+)
G227363 NA non-coding downstream 420881 12243534 ~ 12243755 (+)
G227499 NA non-coding downstream 1165060 12987713 ~ 13043018 (+)
G227510 zc3hc1 non-coding downstream 1248892 13071545 ~ 13075348 (+)
G227639 NA non-coding downstream 1670748 13493401 ~ 13493861 (+)
G227278 LOC104928793 other upstream 54710 11689169 ~ 11757317 (+)
G227216 NA other upstream 699122 11102836 ~ 11112905 (+)
impdh1b LOC104968094,LOC103355171,LOC102293685,LOC102194436,LOC104918784 other upstream 825826 10948285 ~ 10986201 (+)
G227141 dcn,LOC103382665 other upstream 1074524 10732069 ~ 10737503 (+)
G227121 kera other upstream 1112309 10697254 ~ 10699718 (+)
st8sia1 st8sia1 other downstream 284299 12106952 ~ 12126545 (+)
plxna4 plxna4 other downstream 836615 12659268 ~ 12910189 (+)
nrf1 nrf1,LOC103372774 other downstream 1182686 13005339 ~ 13022947 (+)
yeats4 yeats4 other downstream 1651896 13474549 ~ 13479115 (+)
LOC120553473 LOC102193240,LOC101463811,LOC103146510,LOC103459282,LOC106521789,LOC108235098 other downstream 1852151 13674804 ~ 13798380 (+)

Expression


Co-expression Network