nudt5 (nudt5)


Basic Information

Item Value
gene id nudt5
gene name nudt5
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 20565597 ~ 20570560 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792466.1
aAATAGTCTACCCCCACTGAAGGCTAAACTCCGGTGACGTTTGCGATCCCAGGAAGTGGCGACAGAGTGACACCTCACTGTTTTTTTCACATCTAttctctactactactactgcagtTCGGTTTTCACTTGGCCACAAATTGAAAATGAGCAACTCCGAAGAACCCAAAGTGACTTGTGCTCCACACATAGTGAAAGAAGAGCTCATGGCAGCAGGAAAGTGGCTGAAGCTGGAGAACACTACGTACGTGGaccgagctggaaaaaccagAACCTGGGAGACCGTGAAAAGGACGACGAGGCAAACCAACACCGAAACAGACGGCGTCGGTGTTATCGCCCTGCTGAAGCGGACCCTCCATAAAGACTGCGTAGTGATGGTGAAGCAGTTTCGTCCTCCTTTGGGATGCCACACTCTGGAGTTTCCTGCAGGGTTGATTGACGAGGGGGAAACTGCAGAGGCTGCTGCACTGAGGGAGCTAAAAGAAGAAACTGGCTACAAAGGGGAGGTAGTTGGAGTCACTCCAGTGACCTGTCTGGACCCCGGTCTGTCTAACTGCACCACCCAGATCATCATGGTCAACATCAACGGAGATGAAGGGGAGAACATCAACCCAAAACAAGAGCTCGGTGATGGAGAATTTGTTGAGGTCATTCTTTTACCACTTGATGAATTCCAGAAGAAAATAGATGATCtgatgaagaaagaaaagatcGTGGTGGATGCTAAAGTGTACATCTTTGCCATGGGGATGGTCCAGGCCTTCTTTAAGCCGAGGGAGCTCCCCGTTCTGAAGCAGTGAAGGAAAACGTTCAGGATGAGAACGAGAGAAGAAGAAATAGTCTTTTATGTTACATAGGGCTCCTACACAGGACTGGAAAATCTGTATTAAAAAGGACATGGAGGACTTCCAAATTGTAATAAGAATttgtatgaaaatgtgttgtTGCATTGTGGGGTTTAGCCACCATGTAACCTCATATTTCAATTTTAGTTTCTATAAAGTATAATGGCCATACATGGAGTAATATGAAAGTTAGAAGACACAGTACAACTTTGTGTGTTAATCATACTGAACACAAACATCAAATTATGAAATCAAagtcttgtaaaaaaaaaaaaaaactttggctttagaaagtgaaCCTATGAAGGAGCCCTGTTTGCACTACATGCACTGGACTACTTTTTGTTCTCAGTACGAAGGCCTGAAACACACTCTGGTGGCCAATTGTTAATTGTTTGCACACTTAACGCAGAGTAGTTTCAGCCTTTAGGTCTCAGAATGCCTTACTTGACAAATAGtattttccaggtttttatgaGATTACATGTAGTTTAATGAGATGCaatttgttgtcatttttattagTGATCGTAAAACATTCCTAACAGTACTGTTGCAGacttgacggcggaaaaaaatCCACCTCCAAACACTTTTCCTGTTGCTCCGTTGCTTCTCTTGCTGAAGTACGATGCAATTCTTTCATTTCGTTTGTTGTGTTCTACTTTTTCACTTAGATAACCCATGCATTGTGATAATAGATACATATAGTATTTGGTTGGGCTATTAACAACAGTGTTAACAATATGATGGGGGGGATTGCCCTGTGTTACTCCCCTGTAATGTACAACAGAGATACTGTCATGATAGAGGCAGTAACTGATTCATAGGAAGTCATCCATGCTGTGCCTCCAACCTCATTATGGTACAGTTAGCTGGACATCGATGCTGTACTTACCCTAGCAACTACAAATTACTGACCAATGAATAAATGTGATACTACTTTTGTTCTTA
>XM_039792467.1
AGCAGCTATCTAGTGTTAAATAAACAAGTAacgaataaataaaaaaagctaaaagtggAAAAGGAACACGGGGAGTTAAATTTGGTTAGCGTTGCCTGGCTTTAGCAGCTAATTGAGTAACGTTAACTCAAAACGTTTCGTCAGCATTGAAATGTTGGCCACAAATTGAAAATGAGCAACTCCGAAGAACCCAAAGTGACTTGTGCTCCACACATAGTGAAAGAAGAGCTCATGGCAGCAGGAAAGTGGCTGAAGCTGGAGAACACTACGTACGTGGaccgagctggaaaaaccagAACCTGGGAGACCGTGAAAAGGACGACGAGGCAAACCAACACCGAAACAGACGGCGTCGGTGTTATCGCCCTGCTGAAGCGGACCCTCCATAAAGACTGCGTAGTGATGGTGAAGCAGTTTCGTCCTCCTTTGGGATGCCACACTCTGGAGTTTCCTGCAGGGTTGATTGACGAGGGGGAAACTGCAGAGGCTGCTGCACTGAGGGAGCTAAAAGAAGAAACTGGCTACAAAGGGGAGGTAGTTGGAGTCACTCCAGTGACCTGTCTGGACCCCGGTCTGTCTAACTGCACCACCCAGATCATCATGGTCAACATCAACGGAGATGAAGGGGAGAACATCAACCCAAAACAAGAGCTCGGTGATGGAGAATTTGTTGAGGTCATTCTTTTACCACTTGATGAATTCCAGAAGAAAATAGATGATCtgatgaagaaagaaaagatcGTGGTGGATGCTAAAGTGTACATCTTTGCCATGGGGATGGTCCAGGCCTTCTTTAAGCCGAGGGAGCTCCCCGTTCTGAAGCAGTGAAGGAAAACGTTCAGGATGAGAACGAGAGAAGAAGAAATAGTCTTTTATGTTACATAGGGCTCCTACACAGGACTGGAAAATCTGTATTAAAAAGGACATGGAGGACTTCCAAATTGTAATAAGAATttgtatgaaaatgtgttgtTGCATTGTGGGGTTTAGCCACCATGTAACCTCATATTTCAATTTTAGTTTCTATAAAGTATAATGGCCATACATGGAGTAATATGAAAGTTAGAAGACACAGTACAACTTTGTGTGTTAATCATACTGAACACAAACATCAAATTATGAAATCAAagtcttgtaaaaaaaaaaaaaaactttggctttagaaagtgaaCCTATGAAGGAGCCCTGTTTGCACTACATGCACTGGACTACTTTTTGTTCTCAGTACGAAGGCCTGAAACACACTCTGGTGGCCAATTGTTAATTGTTTGCACACTTAACGCAGAGTAGTTTCAGCCTTTAGGTCTCAGAATGCCTTACTTGACAAATAGtattttccaggtttttatgaGATTACATGTAGTTTAATGAGATGCaatttgttgtcatttttattagTGATCGTAAAACATTCCTAACAGTACTGTTGCAGacttgacggcggaaaaaaatCCACCTCCAAACACTTTTCCTGTTGCTCCGTTGCTTCTCTTGCTGAAGTACGATGCAATTCTTTCATTTCGTTTGTTGTGTTCTACTTTTTCACTTAGATAACCCATGCATTGTGATAATAGATACATATAGTATTTGGTTGGGCTATTAACAACAGTGTTAACAATATGATGGGGGGGATTGCCCTGTGTTACTCCCCTGTAATGTACAACAGAGATACTGTCATGATAGAGGCAGTAACTGATTCATAGGAAGTCATCCATGCTGTGCCTCCAACCTCATTATGGTACAGTTAGCTGGACATCGATGCTGTACTTACCCTAGCAACTACAAATTACTGACCAATGAATAAATGTGATACTACTTTTGTTCTTA

Function

symbol description
nudt5 Predicted to enable ADP-ribose diphosphatase activity. Predicted to be involved in nucleoside phosphate metabolic process and ribose phosphate metabolic process. Predicted to be active in nucleus. Orthologous to human NUDT5 (nudix hydrolase 5).

NR:

description
PREDICTED: ADP-sugar pyrophosphatase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K13987 NUDT5; ADP-sugar pyrophosphatase / 8-oxo-dGDP phosphatase / ADP-D-ribose pyrophosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792466.1 False 1802 mRNA 0.42 10 20565597 20570560
XM_039792467.1 True 1827 mRNA 0.42 10 20565804 20570560

Neighbor

gene id symbol gene type direction distance location
ccdc3a ccdc3,LOC102778083 coding upstream 131049 20422837 ~ 20434548 (+)
LOC120553582 phyh coding upstream 189249 20364803 ~ 20376348 (+)
LOC120553583 phyh coding upstream 203077 20355616 ~ 20362520 (+)
elk3 LOC104930592,LOC102779228,LOC102209493,LOC102296588 coding upstream 267511 20287264 ~ 20298086 (+)
plxnc1 NA coding upstream 305169 20212787 ~ 20260428 (+)
fbxo18 NA coding downstream 428 20570988 ~ 20603179 (+)
rbm17 rbm17 coding downstream 72347 20642907 ~ 20655914 (+)
pfkfb3 pfkfb3,LOC102775874,LOC104933238 coding downstream 107489 20678049 ~ 20689946 (+)
ntf3 ntf3 coding downstream 245559 20816119 ~ 20864618 (+)
LOC120553788 NA coding downstream 326659 20897219 ~ 20906821 (+)
G229108 cdc123,LOC102776001 non-coding upstream 417 20563063 ~ 20565180 (+)
G229060 NA non-coding upstream 110809 20442667 ~ 20454788 (+)
G229058 NA non-coding upstream 117040 20439458 ~ 20448557 (+)
G228989 NA non-coding upstream 264156 20298734 ~ 20301441 (+)
LOC120553527 NA non-coding upstream 643743 19921100 ~ 19921854 (+)
G229130 NA non-coding downstream 36672 20607232 ~ 20607530 (+)
G229182 NA non-coding downstream 353388 20923948 ~ 20925059 (+)
G229205 NA non-coding downstream 467388 21037948 ~ 21062435 (+)
G229233 NA non-coding downstream 649888 21220448 ~ 21220812 (+)
G229263 NA non-coding downstream 693836 21264396 ~ 21264699 (+)
ucmaa NA other upstream 174191 20382393 ~ 20391406 (+)
LOC120553418 NA other upstream 340412 20190928 ~ 20225185 (+)
LOC120553749 NA other upstream 392190 20147078 ~ 20173407 (+)
G228924 NA other upstream 579949 19982248 ~ 19985648 (+)
LOC120553104 LOC103364246,LOC103152567,LOC106913527,LOC103459763,LOC103459764,LOC106945279 other upstream 659645 19852928 ~ 19905952 (+)
LOC120553023 LOC106946322,LOC103151516,LOC104922640 other downstream 577707 21148267 ~ 21150351 (+)
arid2 arid2 other downstream 806312 21376872 ~ 21429238 (+)
G229423 NA other downstream 1267362 21837922 ~ 21847020 (+)
G229425 NA other downstream 1278651 21849211 ~ 21850601 (+)
G229422 NA other downstream 1287423 21857983 ~ 21859209 (+)

Expression


Co-expression Network