copg2 (copg2)


Basic Information

Item Value
gene id copg2
gene name copg2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 12316147 ~ 12325770 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792485.1
ACCGGAAGTGAGTTTACATTTTGGCTACGTGGAAGTAGCTCCTCTTATGATCGAGGTTGAGAGCATCTTTTGCCCTCGTCCGCCAGCTTCATTCcgacataatgattaaaaaGTTTGATAAGAAAGACGAGGAGTCTGGAAGTGGGTCGAACCCTTTCCAGCATCTGGAGAAGAGTGCCGTGTTGCAGGAGGCGCGTATCTTCAATGAGACGCCTATCAACCCAAGAAGATGCCTCCACATTCTCACCAAGATTATCTATCTCCTCAACCAGGGAGAGCATTTTGGGACCACAGAGGCCACGGAGGCCTTCTTTGCAATGACCAGGCTCTTTCAGTCCAATGATCAAACCCTGAGGAGGATGTGCTACCTGACAATCAAAGAGATGGCCAACATCTCTGAGGATGTCATCATTGTCACTAGCAGCCTGACCAAAGACATGACTGGGAAGGAAGATGTATACCGAGGACCTGCTATCAGAGCCCTCTGCAGGATTACAGATACCACCATGCTGCAGGCCATTGAGAGATACATGAAACAGGCTATTGTTGACAAGGTGCCCAGTGTGTCCAGCTCAGCCCTGGTCTCCTCACTGCACATGGTGAAGATGAGCTACGATGTGGTGAAGCGTTGGGTGAATGAAGCCCAGGAGGCCGCTTCCAGTGACAACATCATGGTCCAGTACCATGCCCTGGGCCTGCTGTATCACCTCCGGAAGAACGACCGTCTTGCTGTCACCAAGATGCTCAACAAGTTCACCAAGTCTGGTCTCAAGTCTCCATTTGCCTACTGCATGCTCATCAGGATCGCCAGCAAACTGCTGGATGAGACGGATGGAGGTCACGACAGCCCCTTGTTCGACTTCATTGAGAGTTGCCTGAGGAACAAGAATGAGATGGTGGTGTATGAAGCTGCCTCTGCCATTGTCCATATGCCCAACTGTACTGCCCGGGAACTGGCCCCGGCTGTGTCTGTGCTGCAGCTCTTTTGCAGCTCTCCCAAGGCAGCCTTGAGATACGCTGCAGTCAGGACCCTCAACAAGGTGGCCATGAAGCATCCGTCAGCCGTGACTGCGTGCAACTTAGACCTGGAAAACCTGATCACCGACTCGAACCGCAGCATCGCCACTCTGGCCATCACCACTCTGCTCAAGACGGGCAGTGAGAGCAGCGTGGACCGCCTCATGAAACAGATCTCCTCGTTTGTCTCTGAGATCTCGGACGAGTTCAAGgtggtggtggtgcaggCCATCAGCGCTCTGTGCCAGAAGTATCCCAGGAAGCACAGTGTCATGATGAACTTTTTGTCCAACATGCTCAGAGATGATGGTGGCTTTGAGTACAAGCGGGCCATTGTGGACTGCATCATCAGCATCATCGAGGACAACCCAGAGAGCAAAGAGACCGGCTTGGCCCACCTGTGCGAGTTCATCGAGGACTGCGAGCACACTGTGCTAGCCACAAAGATCCTGCACCTACTGGGCAAAGAGGGCCCACGCACCCCCCAGCCCTCCAAGTACATTCGCTTCATCTTCAACCGGGTGGTGCTGGAGAGTGAGGCTGTTCGTGCAGCTGCAGTCAGCGCTTTGGCTAAATTTGGAGCTCAGAATGATGATCTGCTGCCGAGCGTCCTGGTTCTCATGCAGAGGTGCATGATGGACAGTGATGATGAAGTGCGCGACAGAGCTACTTTCTACATGAACGTGCTACAGCAGAAGCAGAAAGCTCTGAATGCTGCCTACATCTTCAACGGTCTCTCTGTTTCCATCCCCGGACTGGAGAAGTCCCTCCACCAGTACACTTTGGAGCCCACAGAGAAACCTTTCGACATGAAGAGTGTCCCTCTGGCCACCACTCCTATCACAGAACACAAAACAGAAATTGCCTCTGTTGCCACCAGCAAACTGCCAGAGAAGTTGGCGCCGTCACGGCAGGACATTTATCAGGAACAACTGGCGGCCATCCCAGAGTTCCAGGCTCTCGGGCCGCTCTTCAAGTCCTCTGAGCAGGTGCAGCTGACGGAGGCAGAGACAGAATATGTGGTGCGCTGCATCAAACACACCTTCGCCAGGCACATGGTGTTCCAGTTCGACTGCACAAACACTCTGAATGACCAGCTCCTGCAGAAGGTCGTAGTGCAGATGGAGCCATCGGAGTCCTACGAGGTGATACAGTACATCCCAGCGGCCAACCTCCCCTACAGTCAGCCTGGTTCCTGCTACACGCTGGTCCGCCTGCCCGACGACGACCCCACCGCCGTGTCTTGTACGTTCAGTTGTACTATGAAGTACCTGGTCAAAGACTGTGACCCCAACACAGGGGAGCCTGACGATGACGGTTATGATGATGAATATGTGCTGGAGGATCTGGAGGTAACGGTTGCCGACCACATCCAGAAGGTTTTGAAACCGAACTTTGGTGCGGCGTGGGAAGAAGTGGGCGATGAATTTGAGAAGGAAGAGACTTTTGCCCTGGCGTCTGTACGAACTCTAGACGAGGCGGTGGGTAACATCATCAGCTTCCTGGGAATGCAGCCATGTGAGCGCTCTGACAAAGTTCCCGAAAATAAGAACTCGCATGTCCTCTTCCTCGCTGgtgtgtTTCGGGGGGGTCACGACGTGCTGGTTCGTGCTCGCCTGGCGCTGGCCGACGGCGTCACCATGCAGGTGACGGTTCGCAGCGATGAAGAGACGGTCGTCGACGTCATCCTGGCCTCCGTCGGCTAAAGCGACGCAGCGGCGCGCCAACACAACCACGAGACCTTTCATCTCTGCACGACAAACTCTCTGAGACATCACTTAGATCTTTTCCACAGCTCTAACATTTTTATGTACGATATTGTTTATTATGCTGACATCATCCAACCTGAAAAACGAATAAACATAAATGTTTTACTTCTAGTTTATGAGCTAAAAAGTGTTTATTCCCTCTTTCTTCACACTGTCTGTTGGTCCTCATGTTTTCTTCTGTCAAATCTTCAATAAATTCTGACTGTCAAAGTA

Function

symbol description
copg2 Predicted to enable structural molecule activity. Predicted to be involved in Golgi vesicle transport; organelle transport along microtubule; and protein secretion. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and membrane. Predicted to be part of COPI vesicle coat. Predicted to be active in Golgi membrane; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in several structures, including axis; notochord; periderm; polster; and solid lens vesicle. Orthologous to several human genes including COPG2 (COPI coat complex subunit gamma 2).

NR:

description
Coatomer subunit gamma-2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030126 COPI vesicle coat cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K17267 COPG; coatomer subunit gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792485.1 True 2999 mRNA 0.52 24 12316147 12325770

Neighbor

gene id symbol gene type direction distance location
LOC120553762 LOC103374597,LOC102209562,LOC104923710,LOC101480655,LOC100694855 coding downstream 217842 12093538 ~ 12098305 (-)
iqsec3a iqsec3,LOC102789444,LOC102305902 coding downstream 232357 11981998 ~ 12083790 (-)
LOC120553245 parp11,LOC103365400,LOC100707536,LOC107085973,LOC102790985,LOC101482593,LOC104955166 coding downstream 372908 11936414 ~ 11943239 (-)
LOC120553247 NA coding downstream 379780 11934128 ~ 11936367 (-)
ccdc59 LOC104955171 coding downstream 463190 11849064 ~ 11852957 (-)
ucn3l LOC103371858,LOC106936223,LOC103146475,LOC103460978 coding upstream 1896 12327666 ~ 12329999 (-)
si:dkey-117n7.5 LOC103382769,LOC107385417 coding upstream 8174 12333944 ~ 12349260 (-)
col7a1l LOC103371861,LOC108235101,LOC106515058 coding upstream 27874 12353644 ~ 12412870 (-)
lrguk NA coding upstream 90044 12415814 ~ 12433137 (-)
exoc4 exoc4 coding upstream 108126 12433896 ~ 12554663 (-)
G227407 NA non-coding downstream 346669 11966652 ~ 11969478 (-)
LOC120553250 NA non-coding downstream 366946 11944330 ~ 11949201 (-)
LOC120553249 NA non-coding downstream 409327 11895643 ~ 11906820 (-)
G227384 NA non-coding downstream 484470 11831029 ~ 11831677 (-)
G227314 NA non-coding downstream 493443 11812483 ~ 11822704 (-)
G227488 NA non-coding upstream 313664 12639434 ~ 12639775 (-)
LOC120553123 NA non-coding upstream 574544 12900314 ~ 13004473 (-)
G227627 cpsf6 non-coding upstream 1082066 13407836 ~ 13454828 (-)
G227629 cacna2d4a,cacna2d4 non-coding upstream 1114222 13439992 ~ 13441507 (-)
G227636 NA non-coding upstream 1138340 13464110 ~ 13472016 (-)
G227429 LOC104958361,LOC103370548 other downstream 27993 12284926 ~ 12288154 (-)
cracr2ab LOC102301749,LOC103365394 other downstream 467206 11837248 ~ 11848941 (-)
pcloa pclo,LOC107085986,LOC103358500,LOC102794373,LOC108235068,LOC106514760 other downstream 639315 11617355 ~ 11676832 (-)
hgfa LOC103365344,LOC104958230 other downstream 833569 11458581 ~ 11482578 (-)
G227197 LOC102293685,LOC104918784,LOC102194436 other downstream 1334888 10980198 ~ 10981259 (-)
ube2h ube2h,LOC107690610,LOC107676921,LOC105888480 other upstream 712381 13038151 ~ 13066528 (-)
cacna1c cacna1c,LOC103459268,LOC106922075,LOC101471946 other upstream 800398 13126168 ~ 13344461 (-)
LOC120553407 napepld,LOC106940535 other upstream 1160116 13485886 ~ 13508247 (-)
LOC120553470 wnk1 other upstream 1190737 13516507 ~ 13617756 (-)
LOC120553486 NA other upstream 1317813 13643583 ~ 13659272 (-)

Expression


Co-expression Network