LOC120553783 (LOC104962829,LOC102309285,LOC102208629,LOC100697441,LOC102795594,LOC101464871)


Basic Information

Item Value
gene id LOC120553783
gene name LOC104962829,LOC102309285,LOC102208629,LOC100697441,LOC102795594,LOC101464871
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10104931 ~ 10107801 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792487.1
AATGCCTGCTCCGCCTCCTTTGGGTGACTCATcaaaacaggaagcaggaagTGTTCGCATTTAGATCGTCACAGGACTTTGTTTGTGAGAGTGAAACAAGAGCCAAGTGTCAAAATGGCAGGCAGGCTCTCGCTCCCAGAGGTGGACCTCTCCTGTTCCATATGCTGCGAAATCTTCAGGGACCCAGTGGTCCTCAAGTGCAGCCACAGCTTCTGTGCACCCTGTCTGCAGCAGTACTGGACTCATGGTGGACTGAGCCGTGACTGCCCTCTGTGCAGAACCCAGAGCGTGGATGACCCTGTGCCTAGTCTCACCCTGAAGAACCTGTGTGAGGCTTACATCCAGGAGAGTGAGGGTCTGGATGACACGGCGGGAGAGCTGTACTGTGATCCAGGGGAAATGTGCCCTCTTCACGGGGAGAGGCTTAAGCTTTTTTGCATGCCAGACAAGGAGGCTATCTGTGTGGTCTGCCACACCTCAAGGAAACACAAACAGCACGAATGCTGCCCTGTCAGCGAGGCTGTCGTAGATGTGAAGGAGAAAATGAAGTCTGCCCTCAGCTCATTGCACGAGAAGAGGGATGCTTTtgacaaaatgaagaaaaactatGAAGATACTGTGGAATACATTCAGgtCCAGGCTCGATTTGTGGCGAGACGGACCCGAGAGGAGTTTGAAAAGCTCCACAGCTTCCTTGACGCCGAGGAGGAAGCCAGGATGGAGGCGCTGAGGGGGGAGGAAGAGCAGAAGAGTCGAGCGTTGATGCAGAAAATTGAAGAAATTACCAGAAATATGGCATCTGTGTCTGAATCCATCAGAGATTTAGAGGAGGGGATAGCTTTAGAGGGCATCTCTGTCCTTCATaaatgcAAGAAGACATTGACAAgAGCTAGCAGCCCAATCGAAGATCCAGTCATGGCTCCAGGAGCACTCCTGGATGTGGCCAAATATCTGGGTTCTCTGAACTTCCATGTGTGGGAGAAGATGCATAAAACTGTCAAACTCACCCCAGTGACTCTGGACCCCAACACCGCTGCCCCGTGGCTCGTCCTGTCAGACGACCTCACCAGCGTCTGTGACAGCGATGAGAAGCAGAAGCTGCCCGACAACCCGGAGAGGTTCGACCCCGACACCGGCGTACTGGGCCGCGAGAGCTTCACCTCAGGCAAGCATGCCTGGGACGTCAATGTGGGAGATAATACGGCGTGGGTTGTCGGCGTGGCTAAAGAATCTGtccagaggaaagagaaagtgtCTTCAGTGCTGAAGAACGGCTACCTGAGTGTGTACTTTTACCACAAGATGTACTTTGCGGGTACTTCTCCTTTAACAAGGCTGAACTTGAAGAGGAACCCACAGAGGATCAGAGTGCAGCTGGACTGTGACAAGGGCAGGGTGTCGTTCTACGACCCACACGACAACACGCACATCTACACCTTCAAGCACGCCATCACGGAGAAAGTCTTCCCTTACTTCTGGGTCGGTTGTCAGCAGTGTCCCTTGACGGTGGAACCGCTGGAGGTTTCTGTGAAAGCGgttgaatatttgtga
>XM_039792488.1
ATGGCAGGCAGGCTCTCGCTCCCAGAGGTGGACCTCTCCTGTTCCATATGCTGCGAAATCTTCAGGGACCCAGTGGTCCTCAAGTGCAGCCACAGCTTCTGTGCACCCTGTCTGCAGCAGTACTGGACTCATGGTGGACTGAGCCGTGACTGCCCTCTGTGCAGAACCCAGAGCGTGGATGACCCTGTGCCTAGTCTCACCCTGAAGAACCTGTGTGAGGCTTACATCCAGGAGAGTGAGGGTCTGGATGACACGGCGGGAGAGCTGTACTGTGATCCAGGGGAAATGTGCCCTCTTCACGGGGAGAGGCTTAAGCTTTTTTGCATGCCAGACAAGGAGGCTATCTGTGTGGTCTGCCACACCTCAAGGAAACACAAACAGCACGAATGCTGCCCTGTCAGCGAGGCTGTCGTAGATGTGAAGGAGAAAATGAAGTCTGCCCTCAGCTCATTGCACGAGAAGAGGGATGCTTTtgacaaaatgaagaaaaactatGAAGATACTGTGGAATACATTCAGgtCCAGGCTCGATTTGTGGCGAGACGGACCCGAGAGGAGTTTGAAAAGCTCCACAGCTTCCTTGACGCCGAGGAGGAAGCCAGGATGGAGGCGCTGAGGGGGGAGGAAGAGCAGAAGAGTCGAGCGTTGATGCAGAAAATTGAAGAAATTACCAGAAATATGGCATCTGTGTCTGAATCCATCAGAGATTTAGAGGAGGGGATAGCTTTAGAGGGCATCTCTGTCCTTCATaaatgcAAGAAGACATTGACAAgAGCTAGCAGCCCAATCGAAGATCCAGTCATGGCTCCAGGAGCACTCCTGGATGTGGCCAAATATCTGGGTTCTCTGAACTTCCATGTGTGGGAGAAGATGCATAAAACTGTCAAACTCACCCCAGTGACTCTGGACCCCAACACCGCTGCCCCGTGGCTCGTCCTGTCAGACGACCTCACCAGCGTCTGTGACAGCGATGAGAAGCAGAAGCTGCCCGACAACCCGGAGAGGTTCGACCCCGACACCGGCGTACTGGGCCGCGAGAGCTTCACCTCAGGCAAGCATGCCTGGGACGTCAATGTGGGAGATAATACGGCGTGGGTTGTCGGCGTGGCTAAAGAATCTGtccagaggaaagagaaagtgtCTTCAGTGCTGAAGAACGGCTACCTGAGTGTGTACTTTTACCACAAGATGTACTTTGCGGGTACTTCTCCTTTAACAAGGCTGAACTTGAAGAGGAACCCACAGAGGATCAGAGTGCAGCTGGACTGTGACAAGGGCAGGGTGTCGTTCTACGACCCACACGACAACACGCACATCTACACCTTCAAGCACGCCATCACGGAGAAAGTCTTCCCTTACTTCTGGGTCGGTTGTCAGCAGTGTCCCTTGACGGTGGAACCGCTGGAGGTTTCTGTGAAAGCGgttgaatatttgtgaaaatgcatttccttttcacaactttttgcttttcttcagcaCCAAAGGAgtgagaacttttttttttgaatttcaCACCGTAAGAGGAGGGCGCTTTGAATCTGAAATCAAATAATCAGCACTTTGTCCTACAACCTTTTCCCAGTAATGAATACTTTGCCTGTACACCTTTACATACTTTAGTTTGATATCTGCACTTTGAACTATTATGAAAGATACTGCTATttccttaaaatgttttttgtttgttgcaaaATTCAGTTTGATAACATAATGTAACCAAAAATATGGCTGTTTAAAGGAATTTAAATTTGTAAAATGATTCTGAATTGGCATGTCAGACTAAATGTTTTTAAGCCTAATTGTGTATATAACTAGATAATTTATATATAACTACAGATATTCGGCAAACGCTAAATATGCTTTATGTGCAAATACTAATAAGAGTACTAATTTACAAATAAATGATTTGCAAATA

Function

NR:

description
PREDICTED: tripartite motif-containing protein 35-like

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12012 TRIM35; tripartite motif-containing protein 35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792487.1 False 1551 mRNA 0.53 7 10104931 10107323
XM_039792488.1 True 1915 mRNA 0.47 6 10105211 10107801

Neighbor

gene id symbol gene type direction distance location
LOC120553071 NA coding upstream 1326 10100696 ~ 10103605 (+)
chrm2a chrm2,LOC103140231,LOC106927335,LOC100534441,LOC102208075 coding upstream 75027 9952600 ~ 10029904 (+)
cd36 NA coding upstream 425116 9673991 ~ 9679815 (+)
LOC120553346 ergic2 coding upstream 831023 9268198 ~ 9273908 (+)
guca1a LOC103358093,LOC102788764 coding upstream 984946 9116805 ~ 9119985 (+)
LOC120553300 NA coding downstream 518 10108319 ~ 10116627 (+)
foxm1 foxm1 coding downstream 32981 10140782 ~ 10147571 (+)
LOC120553731 LOC105357099,LOC107105006,LOC108233212,LOC103459183 coding downstream 52930 10160731 ~ 10161654 (+)
def6c LOC103371612 coding downstream 57696 10165497 ~ 10174114 (+)
LOC120553550 mcat,LOC102779964 coding downstream 67342 10175143 ~ 10183282 (+)
LOC120553125 NA non-coding upstream 168338 9934175 ~ 9936593 (+)
G226930 LOC104947167 non-coding upstream 236846 9867575 ~ 9868085 (+)
G226921 mtpn non-coding upstream 278406 9796473 ~ 9826525 (+)
G226922 NA non-coding upstream 298329 9806242 ~ 9806602 (+)
G226918 NA non-coding upstream 350815 9751944 ~ 9754116 (+)
G227088 NA non-coding downstream 430395 10538196 ~ 10538689 (+)
G227107 tcp11l2,LOC102777109 non-coding downstream 517645 10625446 ~ 10627982 (+)
G227108 NA non-coding downstream 521007 10628808 ~ 10630212 (+)
G227116 NA non-coding downstream 557908 10665709 ~ 10667280 (+)
G227139 NA non-coding downstream 598109 10705910 ~ 10709545 (+)
ndufb2 ndufb2,LOC102790702 other upstream 863582 9237226 ~ 9241349 (+)
lhfpl3 lhfpl3,LOC101483460 other upstream 931711 9134594 ~ 9173220 (+)
rps16 rps16,LOC103382554 other upstream 1672234 8426635 ~ 8432697 (+)
LOC120553156 LOC104945813 other upstream 2535628 7566655 ~ 7569303 (+)
LOC120553154 LOC104945813,LOC103356648 other upstream 2572854 7525892 ~ 7532077 (+)
G227121 kera other downstream 589453 10697254 ~ 10699718 (+)
G227141 dcn,LOC103382665 other downstream 624268 10732069 ~ 10737503 (+)
impdh1b LOC104968094,LOC103355171,LOC102293685,LOC102194436,LOC104918784 other downstream 840484 10948285 ~ 10986201 (+)
G227216 NA other downstream 995035 11102836 ~ 11112905 (+)
G227278 LOC104928793 other downstream 1581368 11689169 ~ 11757317 (+)

Expression


Co-expression Network