LOC120553796 (LOC104934096,LOC103355199)


Basic Information

Item Value
gene id LOC120553796
gene name LOC104934096,LOC103355199
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15338839 ~ 15345725 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792506.1
TAATCCCCTCGCTTCCAACATTTCCGACTGCACGTGAAAGCAGCACAGACCCCTCACCCAGTGCATCACAGTGACGTCCTGTGCGGAGAGATATTGTAGATGCCCTTACAGTCATAATCATAGGTTTATAGTCTTTATATTTGCTTTATGTAAAAGGTAGTTTTAAAGCCTGGGAGAGAAGCAGCAGCATGCATCGGAGCGCAGTGGTCGTGGTGGCGGATAAAACGAGCCTGAAAAGGCCGTTTATTTTTGCAAACGCTGTGCATATGGCTCTGTGCTCCTTCATGTTGACGATGACAGTAGCTTGGCATAGAGACCTCATACAAACTGGCAAACTGGTGTCCAGTGTTTCTGTAGTGATAATGTACTTGGTAGAGATCGGCTGCCTGCTGCTCTCAGTGATCGGTGTGGTTGGAGCCTGTACAGGAAAGAGATGGTGTTTGAttctgTATGCAACTGGGATGGCGGCAGCCAGTCAAACAATAATTGTGAGAACAGCACTAAGTTACCAAGATGTTTATGAGAAACGTGTGGTCCGTGAGGAGACTAAGTTGCTGTCCATGATGCCACTTACTGGAACCAGCAAAGCCAACAGGACCCTGTTGTATAGTATTCAAAAAGAATTTGAGTGCTGTGGTCTTATTGAAGGCTATAAAGACTGGGGCGCTTCCATCCCTGCCTCCTGTAACTGTCAATATCCAGGAAAATGCATTCGACTACGGGGCAGCGCCACACTCGGGGCTCCAAAGAACCAGTATGTTTATCAAGAGCCTTGCCTACATGTGTATGTTTCTGAACTGAAGCTTGCATTCTCATTGACGATGGCTGTTCAATTCGGAAGTGGAGTATTTTGGGTGGTTCTACTGGTCATGAGCATCAAGCTGATGGGCCAGATAAAAAGGAAACAGGAGTTCATGGCTCTTCTCCTAACAAACAGATATGTTCCTGGTGCCTTCTAGTCACCTCATATGTTTTGATAGACACTTCAAATTATTATCAAGCATACCTGATTTGTATTTGCACATTATGCTGTATACCATAACCTGGCTATTTTTGTGCTATAGCAACATATGTTGGCATCATAATTTCCTGTCAATGCATGTAACTGATATTGAAAAGTAATATACATGCATAGATCAATTTCCTTTGTCCTACTGCTGTAAAAACATTGCAATTTATTGAAATTAACTATGTTTAATAATCAGCACATTTTCAAATGCTTTTGTCATATATCTGAAATTATGTTCGAAATTATTATATCTTACCAAGCATTAACCAGCCATCTGTTTTCTTTGAGTAGCTAGACCCGATTCCCAGCATTTTGTTATTTACAGTAAGTGTTGTCTTATCTGGATAATATTCAGATATTATTAAGTCCATTTCCTTTATACCTGGATACATCGCTGAGTCTTTGGAAAGACATATGAATCTAATTGCATCTACTGTACCTACAACTTTATCAATTAATGGGTTTAATTTAACTCTTGTCAACTGGACCAACTTCTTTTAAGCACACATTTAAATATTCATACTTGTCTAAAACTCACTCATTGAATTTTCAGCATTAGAGAAACCAATAATCTTTGaacaaataataatatgaataacCCGTATGTAGCACATTTCATAAACAgtgtttacaaagtgctttgatTGAAATATaaccatgtatttattattgagcAATGTATTTCCTTGGATAAATAATCAGGTTGGACGACGGAATGAGCCACAGCTCTCATTGGGACAACAGAATGTCTTGATGCCTTGTTATGCACAATGTATATTTGAAACTTCATCTCTCCATTAAGTTTTTATTAAGGCATATTTAGTGGGTAAATGATACCCACTAGGAGGAAAGGGGATTCTGTTTGGTTGCACATTAAGTAGACATGCATTAAATCCTCAACTATTTCGcctgcaaaagtttgatttcaAGGTTTGGAGACATTTTGGCAAGGCCACTGCAGACAGGTTGTGAGAGGCTCCTGTAGGAAAACGCGTCAACAATATTCTTGCAGAGACTGTAATGTCCCGACTGATGCCACTCTCACCGAAGAAGCCTTTATGCCACATCACTCCTAAAATGACTTGCTGCATGAGCTGCCTGCGGTTGAAATGTCATCCTTGACTGATATATTGTCATATGAATTTCATCTGACACAGCAGATCCAATGTCTACCTGTGCACTTTAACCATTAATGCCTAATATACAATATACTCTTGCCAAGTATGGTATTGTTATTTCTGTTAtacactgtttttatttatttatggaaTGAACTGATGTAATATTTTGTAAATAGCAGGAATAAAATATGTGATTCTTG

Function

NR:

description
PREDICTED: tetraspanin-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792506.1 True 2330 mRNA 0.39 9 15338839 15345725

Neighbor

gene id symbol gene type direction distance location
fgl2a fgl2 coding upstream 82516 15246158 ~ 15256323 (+)
LOC120553461 NA coding upstream 584589 14750780 ~ 14754250 (+)
lmod2b lmod2 coding upstream 917880 14413543 ~ 14420959 (+)
asb15b LOC103373124 coding upstream 925824 14397723 ~ 14413015 (+)
ints13 asun coding upstream 964185 14367920 ~ 14374654 (+)
pus7l pus7l coding downstream 15204 15360929 ~ 15368119 (+)
zcrb1 zcrb1 coding downstream 145558 15491283 ~ 15493423 (+)
gxylt1b gxylt1,LOC103355206,LOC103459445 coding downstream 166124 15511849 ~ 15521235 (+)
akap14 NA coding downstream 413586 15759311 ~ 15759832 (+)
avpr2l LOC103369361,LOC104965399,LOC107098425 coding downstream 417068 15762793 ~ 15764738 (+)
G228065 NA non-coding upstream 48331 15290187 ~ 15290508 (+)
G227995 nampt,LOC102790888 non-coding upstream 172630 15154129 ~ 15166209 (+)
G227969 NA non-coding upstream 193641 15141212 ~ 15145198 (+)
G227972 znf800,LOC102791911 non-coding upstream 278005 15060004 ~ 15060834 (+)
G227970 NA non-coding upstream 281361 15054705 ~ 15057478 (+)
G228119 NA non-coding downstream 185406 15531131 ~ 15531439 (+)
G228128 cntn1 non-coding downstream 331630 15677355 ~ 15680269 (+)
G228130 NA non-coding downstream 334648 15680373 ~ 15681491 (+)
G228136 NA non-coding downstream 344183 15689908 ~ 15699902 (+)
LOC120553205 NA non-coding downstream 375799 15721524 ~ 15722242 (+)
lrrc17 LOC103355197,LOC103382847 other upstream 7661 15300522 ~ 15331178 (+)
LOC120553256 gsap,LOC102790605 other upstream 135798 15168604 ~ 15203041 (+)
LOC120553353 spam1,LOC103370765,LOC102199515,LOC101470336,LOC102310263 other upstream 876365 14454593 ~ 14462474 (+)
LOC120553485 tmem60,LOC101486292,LOC104924613,LOC103382814,LOC100699021 other upstream 1333934 14002132 ~ 14004905 (+)
trnal-caa_22 NA other upstream 1536636 13802093 ~ 13802203 (+)
prickle1b prickle1 other downstream 96260 15441985 ~ 15471887 (+)
yaf2 yaf2,LOC102236902 other downstream 148952 15494677 ~ 15511178 (+)
tmem168a LOC103368481 other downstream 921411 16267136 ~ 16280061 (+)
cald1a LOC102212027,LOC102781594,LOC102298269,LOC103382882,LOC106941466,LOC103156466,LOC101472471,LOC106916645,LOC106525550,LOC107395349,LOC103356441 other downstream 1425333 16771058 ~ 16831243 (+)
stmp1 NA other downstream 1520585 16866310 ~ 16867796 (+)

Expression


Co-expression Network